Wall clock time and date at job start Mon Mar 30 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81392 * 1 3 3 C 1.81404 * 103.00214 * 2 1 4 4 H 1.08999 * 109.53264 * 54.90309 * 3 2 1 5 5 C 1.53122 * 109.50183 * 294.80358 * 3 2 1 6 6 C 1.53115 * 109.15784 * 182.40648 * 5 3 2 7 7 C 1.53038 * 109.28226 * 57.65340 * 6 5 3 8 8 N 1.46849 * 109.52189 * 300.81795 * 7 6 5 9 9 C 1.46896 * 110.99858 * 185.83858 * 8 7 6 10 10 C 1.52997 * 109.47114 * 45.79213 * 9 8 7 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00542 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99408 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46785 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47025 * 119.99859 * 17 15 13 20 20 H 1.48498 * 109.46692 * 239.99831 * 17 15 13 21 21 C 1.46850 * 111.19619 * 61.74193 * 8 7 6 22 22 H 1.08999 * 109.47678 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47241 * 300.00312 * 1 2 3 24 24 H 1.09000 * 109.47373 * 59.99972 * 1 2 3 25 25 H 1.08999 * 109.52168 * 302.30607 * 5 3 2 26 26 H 1.08995 * 109.52101 * 62.49587 * 5 3 2 27 27 H 1.08998 * 109.50330 * 177.59784 * 6 5 3 28 28 H 1.09002 * 109.49942 * 297.66830 * 6 5 3 29 29 H 1.08999 * 109.45997 * 180.80585 * 7 6 5 30 30 H 1.08994 * 109.46356 * 60.83677 * 7 6 5 31 31 H 1.09001 * 109.47267 * 285.78924 * 9 8 7 32 32 H 1.09004 * 109.47041 * 165.79328 * 9 8 7 33 33 H 1.09001 * 109.46832 * 59.99999 * 10 9 8 34 34 H 1.08993 * 109.47194 * 299.99521 * 10 9 8 35 35 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 36 36 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 37 37 H 1.08996 * 109.46952 * 300.00302 * 12 11 10 38 38 H 1.09001 * 109.46832 * 60.00321 * 12 11 10 39 39 H 0.96999 * 119.99910 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46278 * 58.27301 * 21 8 7 41 41 H 1.08997 * 109.46535 * 178.23864 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7286 2.2555 0.8405 5 6 1.7471 2.4018 -1.3102 6 6 2.1486 3.8793 -1.3277 7 6 3.6659 3.9926 -1.1635 8 7 4.0699 3.3722 0.1047 9 6 5.5007 3.5837 0.3619 10 6 5.8573 5.0461 0.0880 11 6 7.3474 5.2666 0.3565 12 6 7.7039 6.7291 0.0833 13 6 9.1716 6.9462 0.3472 14 1 9.7886 6.1231 0.6764 15 6 9.7270 8.1954 0.1683 16 7 8.9758 9.1975 -0.2331 17 14 11.5465 8.4642 0.4947 18 1 12.1649 7.1868 0.9316 19 1 12.2083 8.9342 -0.7488 20 1 11.7126 9.4852 1.5602 21 6 3.7372 1.9420 0.1258 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 2.2107 1.8884 -2.1525 26 1 0.6628 2.3180 -1.3834 27 1 1.8508 4.3261 -2.2763 28 1 1.6533 4.4007 -0.5086 29 1 3.9534 5.0440 -1.1612 30 1 4.1598 3.4830 -1.9908 31 1 6.0868 2.9381 -0.2922 32 1 5.7221 3.3443 1.4020 33 1 5.2712 5.6916 0.7422 34 1 5.6359 5.2855 -0.9520 35 1 7.5684 5.0273 1.3967 36 1 7.9338 4.6210 -0.2973 37 1 7.4827 6.9688 -0.9567 38 1 7.1175 7.3743 0.7375 39 1 9.3665 10.0763 -0.3593 40 1 4.2308 1.4420 -0.7075 41 1 4.0766 1.5040 1.0644 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385328606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:40 Heat of formation + Delta-G solvation = -43.804311 kcal Electronic energy + Delta-G solvation = -17005.627779 eV Core-core repulsion = 14430.692135 eV Total energy + Delta-G solvation = -2574.935644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.19260 -36.82632 -35.12948 -33.48788 -31.98426 -30.20914 -29.54956 -26.85370 -25.09169 -24.15453 -22.60157 -21.54634 -20.79015 -18.43056 -17.63665 -16.70121 -16.53173 -16.45930 -16.15199 -15.30399 -15.18019 -14.95666 -14.72095 -14.46965 -14.20635 -13.93763 -13.68973 -13.40186 -13.24664 -12.89201 -12.87644 -12.70040 -12.33027 -12.24434 -12.16308 -11.82611 -11.67041 -11.54819 -11.34778 -11.18951 -10.98521 -10.70336 -10.56049 -9.34528 -8.71210 -8.20416 -6.31542 0.66536 1.39443 1.39682 1.53298 1.63517 2.40631 2.93216 3.12475 3.59637 3.72207 3.95036 4.01408 4.12247 4.19888 4.30687 4.33600 4.36647 4.45561 4.51628 4.58143 4.62895 4.73160 4.77341 4.82056 4.85013 4.89497 4.94924 5.03972 5.14509 5.20980 5.27431 5.31964 5.35210 5.54314 5.77342 5.86560 6.03907 6.08150 6.26128 6.86102 7.37789 8.91712 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.059498 B = 0.002993 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.492567 B = 9352.101655 C = 9700.945618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.306 6.306 3 C -0.036 4.036 4 H 0.094 0.906 5 C -0.108 4.108 6 C -0.109 4.109 7 C 0.041 3.959 8 N -0.540 5.540 9 C 0.066 3.934 10 C -0.108 4.108 11 C -0.097 4.097 12 C 0.024 3.976 13 C -0.543 4.543 14 H 0.059 0.941 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.078 3.922 22 H 0.112 0.888 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.048 0.952 37 H -0.010 1.010 38 H -0.010 1.010 39 H 0.264 0.736 40 H 0.035 0.965 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.365 -17.076 -1.310 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.079 6.079 3 C -0.165 4.165 4 H 0.112 0.888 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.087 4.087 8 N -0.265 5.265 9 C -0.061 4.061 10 C -0.146 4.146 11 C -0.135 4.135 12 C -0.013 4.013 13 C -0.581 4.581 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.051 4.051 22 H 0.130 0.870 23 H 0.103 0.897 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.008 0.992 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.961 -17.604 -0.954 25.168 hybrid contribution 0.675 1.184 -0.509 1.455 sum -17.286 -16.420 -1.462 23.887 Atomic orbital electron populations 1.23434 0.90818 1.07454 1.05897 1.86973 1.11098 1.11792 1.98067 1.23087 0.98802 0.92547 1.02067 0.88794 1.21877 1.01724 0.95677 0.95500 1.21597 0.94099 0.96115 1.03029 1.22318 0.96834 1.00135 0.89377 1.62004 1.17487 1.12813 1.34203 1.22052 0.86703 0.95959 1.01403 1.21635 0.95910 0.95794 1.01232 1.21405 0.94883 0.96921 1.00307 1.19010 0.94981 0.92689 0.94648 1.21768 0.95972 0.95413 1.44982 0.92289 1.26012 1.03193 0.95913 0.94925 1.70107 1.37751 1.01609 1.48009 0.85390 0.79183 0.78469 0.77961 1.18612 1.20301 1.20271 1.21749 0.93390 0.88334 1.01584 0.86970 0.89691 0.89368 0.91417 0.90051 0.89610 0.91065 0.90372 0.95162 0.94822 0.90285 0.92292 0.92281 0.92993 0.93286 0.99180 0.99125 0.92766 0.94727 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.47 113.37 1.19 0.02 16 2 S -0.31 -5.60 21.79 -56.49 -1.23 -6.83 16 3 C -0.04 -0.67 2.81 30.65 0.09 -0.59 16 4 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 5 C -0.11 -1.75 5.17 30.67 0.16 -1.60 16 6 C -0.11 -1.95 6.09 30.65 0.19 -1.77 16 7 C 0.04 0.97 4.85 86.33 0.42 1.38 16 8 N -0.54 -13.62 4.81 -896.37 -4.31 -17.93 16 9 C 0.07 1.88 5.27 86.30 0.46 2.33 16 10 C -0.11 -3.69 4.46 30.60 0.14 -3.55 16 11 C -0.10 -4.04 5.15 30.60 0.16 -3.89 16 12 C 0.02 1.29 4.97 29.85 0.15 1.44 16 13 C -0.54 -31.67 9.11 25.60 0.23 -31.43 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 16 N -0.93 -57.82 13.29 21.45 0.28 -57.54 16 17 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 C 0.08 1.75 4.71 86.32 0.41 2.15 16 22 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.09 0.78 7.23 -2.39 -0.02 0.76 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.03 7.05 -2.39 -0.02 1.02 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.08 2.04 5.81 -2.39 -0.01 2.03 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.03 0.94 8.08 -2.39 -0.02 0.92 16 32 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.06 2.01 6.21 -2.39 -0.01 2.00 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 39 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 1.80 8.12 -2.39 -0.02 1.78 16 Total: -1.00 -64.80 331.81 1.76 -63.04 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.95 Total: 7.51 kcal Atomic # 6 Polarization: -39.24 SS G_CDS: 4.04 Total: -35.21 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -4.02 Total: -75.47 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -1.23 Total: -6.83 kcal Total: -64.80 1.76 -63.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385328606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.238 kcal (2) G-P(sol) polarization free energy of solvation -64.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds