Wall clock time and date at job start Mon Mar 30 2020 06:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35695 * 117.00172 * 2 1 4 4 C 1.39176 * 119.90292 * 359.97438 * 3 2 1 5 5 C 1.37564 * 120.15369 * 179.97438 * 4 3 2 6 6 C 1.40005 * 119.95583 * 0.02562 * 5 4 3 7 7 C 1.47500 * 120.09492 * 180.02562 * 6 5 4 8 8 O 1.21836 * 120.00021 * 180.02562 * 7 6 5 9 9 C 1.41744 * 120.00082 * 359.97438 * 7 6 5 10 10 H 1.08000 * 120.00360 * 353.20068 * 9 7 6 11 11 C 1.40350 * 119.99859 * 173.19428 * 9 7 6 12 12 N 1.30531 * 119.99565 * 6.10684 * 11 9 7 13 13 Si 1.86797 * 119.99970 * 186.10391 * 11 9 7 14 14 H 1.48496 * 109.47312 * 94.98629 * 13 11 9 15 15 H 1.48498 * 109.47067 * 214.98921 * 13 11 9 16 16 H 1.48502 * 109.47063 * 334.98305 * 13 11 9 17 17 C 1.40073 * 119.80689 * 0.02562 * 6 5 4 18 18 Cl 1.73595 * 120.07533 * 179.97438 * 17 6 5 19 19 C 1.37946 * 119.84605 * 359.73630 * 17 6 5 20 20 F 1.35101 * 119.97874 * 180.27681 * 19 17 6 21 21 H 1.08999 * 109.46653 * 60.00507 * 1 2 3 22 22 H 1.08997 * 109.47366 * 300.00296 * 1 2 3 23 23 H 1.09005 * 109.47447 * 180.02562 * 1 2 3 24 24 H 1.07997 * 119.92103 * 0.02562 * 4 3 2 25 25 H 1.08008 * 120.02411 * 180.02562 * 5 4 3 26 26 H 0.97000 * 119.99583 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2851 2.3750 -0.0005 5 6 1.9043 3.6034 0.0000 6 6 3.3022 3.6817 0.0005 7 6 3.9693 4.9972 0.0017 8 8 5.1859 5.0633 0.0017 9 6 3.1950 6.1845 0.0017 10 1 2.1222 6.1296 -0.1099 11 6 3.8226 7.4315 0.1468 12 7 5.1255 7.5085 0.1620 13 14 2.7932 8.9808 0.3181 14 1 2.6151 9.3001 1.7573 15 1 3.4815 10.1096 -0.3579 16 1 1.4647 8.7642 -0.3090 17 6 4.0653 2.5071 0.0000 18 17 5.7990 2.5960 0.0000 19 6 3.4360 1.2795 0.0044 20 9 4.1695 0.1449 0.0096 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 0.2068 2.3152 -0.0005 25 1 1.3125 4.5069 0.0000 26 1 5.5593 8.3702 0.2626 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394614731.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:26 Heat of formation + Delta-G solvation = -115.846150 kcal Electronic energy + Delta-G solvation = -16623.597317 eV Core-core repulsion = 13414.815747 eV Total energy + Delta-G solvation = -3208.781570 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 258.025 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.93636 -41.06084 -39.36085 -37.66467 -37.09616 -34.70592 -31.88418 -31.26621 -29.09049 -27.86432 -24.50213 -23.65946 -21.74416 -19.44075 -18.91112 -17.94079 -17.66855 -17.27989 -16.87999 -16.16112 -16.13210 -15.57532 -15.45872 -14.99567 -14.55250 -14.09656 -13.57630 -13.36659 -13.18207 -13.05014 -12.73583 -12.66396 -12.49176 -12.10073 -11.94045 -11.76821 -11.70789 -10.92706 -9.79704 -9.37576 -9.21798 -8.26664 -6.98624 -0.14639 -0.02462 1.08560 1.42493 1.44298 1.60579 2.07461 2.22349 2.26214 2.65348 3.04858 3.70678 3.73830 3.78580 4.17081 4.18979 4.44268 4.46328 4.73954 4.79489 4.90611 5.00161 5.26574 5.33438 5.46403 6.01399 6.23136 6.75774 6.81535 8.31167 8.54557 Molecular weight = 258.02amu Principal moments of inertia in cm(-1) A = 0.025775 B = 0.007169 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.042860 B = 3905.006075 C = 4972.567321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.112 3.888 4 C -0.170 4.170 5 C -0.042 4.042 6 C -0.144 4.144 7 C 0.361 3.639 8 O -0.562 6.562 9 C -0.537 4.537 10 H 0.102 0.898 11 C 0.025 3.975 12 N -0.786 5.786 13 Si 0.994 3.006 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.240 1.240 17 C -0.034 4.034 18 Cl -0.042 7.042 19 C 0.037 3.963 20 F -0.136 7.136 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.125 0.875 24 H 0.190 0.810 25 H 0.166 0.834 26 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.676 -8.132 0.087 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.238 6.238 3 C 0.065 3.935 4 C -0.188 4.188 5 C -0.061 4.061 6 C -0.146 4.146 7 C 0.258 3.742 8 O -0.453 6.453 9 C -0.568 4.568 10 H 0.120 0.880 11 C -0.194 4.194 12 N -0.415 5.415 13 Si 0.813 3.187 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.162 1.162 17 C -0.063 4.063 18 Cl -0.013 7.013 19 C 0.016 3.984 20 F -0.114 7.114 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.143 0.857 24 H 0.207 0.793 25 H 0.184 0.816 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.667 -8.314 0.088 15.152 hybrid contribution 0.463 0.435 0.082 0.640 sum -12.205 -7.879 0.169 14.528 Atomic orbital electron populations 1.23574 0.74915 1.06340 1.03318 1.86042 1.24729 1.24851 1.88184 1.18940 0.88957 0.87054 0.98549 1.21581 1.02192 0.89378 1.05623 1.21596 0.91782 0.99269 0.93412 1.21512 0.95420 0.95460 1.02235 1.18634 0.89041 0.86979 0.79544 1.90574 1.16464 1.88660 1.49641 1.21381 0.96796 0.91808 1.46770 0.87972 1.27207 0.95929 1.04685 0.91564 1.70116 1.12184 1.27604 1.31594 0.85052 0.79233 0.75081 0.79374 1.18815 1.20041 1.16212 1.21138 0.86806 0.93009 1.05309 1.98363 1.07992 1.98554 1.96350 1.16662 0.87443 0.80791 1.13486 1.91445 1.77070 1.48219 1.94704 0.90599 0.90615 0.85714 0.79290 0.81618 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.28 15 2 O -0.32 -8.57 10.34 -90.14 -0.93 -9.50 15 3 C 0.11 3.53 6.71 22.74 0.15 3.68 15 4 C -0.17 -4.52 9.01 22.34 0.20 -4.32 15 5 C -0.04 -1.45 9.42 22.54 0.21 -1.23 15 6 C -0.14 -6.61 5.89 -19.96 -0.12 -6.73 15 7 C 0.36 20.14 6.89 25.58 0.18 20.32 15 8 O -0.56 -35.72 12.53 -4.79 -0.06 -35.78 15 9 C -0.54 -27.91 8.83 23.65 0.21 -27.70 15 10 H 0.10 4.50 6.06 -2.91 -0.02 4.49 15 11 C 0.03 1.30 5.49 85.40 0.47 1.77 15 12 N -0.79 -45.13 11.76 21.89 0.26 -44.88 15 13 Si 0.99 37.12 29.57 68.60 2.03 39.15 15 14 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 15 H -0.28 -10.13 7.11 99.48 0.71 -9.42 15 16 H -0.24 -8.03 7.11 99.48 0.71 -7.32 15 17 C -0.03 -1.56 6.36 22.65 0.14 -1.41 15 18 Cl -0.04 -2.03 25.67 -2.72 -0.07 -2.10 15 19 C 0.04 1.45 7.28 22.45 0.16 1.61 15 20 F -0.14 -5.39 16.67 44.97 0.75 -4.64 15 21 H 0.08 0.82 7.65 -2.39 -0.02 0.80 15 22 H 0.08 0.82 7.65 -2.39 -0.02 0.80 15 23 H 0.12 1.12 8.14 -2.38 -0.02 1.10 15 24 H 0.19 3.03 6.28 -2.91 -0.02 3.01 15 25 H 0.17 4.98 6.21 -2.91 -0.02 4.96 15 26 H 0.28 14.49 8.29 -92.71 -0.77 13.72 15 Total: -1.00 -73.09 253.82 5.94 -67.15 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 1.24 Total: 3.33 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 2.72 Total: -12.73 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.26 Total: -44.88 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -0.99 Total: -45.28 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.75 Total: -4.64 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.07 Total: -2.10 kcal Total: -73.09 5.94 -67.15 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394614731.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.692 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds