Wall clock time and date at job start Mon Mar 30 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81403 * 109.47323 * 2 1 4 4 C 1.81397 * 102.99705 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.50447 * 305.07282 * 4 3 2 6 6 C 1.53115 * 109.53858 * 65.17793 * 4 3 2 7 7 C 1.53116 * 109.16421 * 177.61129 * 6 4 3 8 8 C 1.53038 * 109.28002 * 302.34749 * 7 6 4 9 9 N 1.46846 * 109.52665 * 59.17159 * 8 7 6 10 10 C 1.46894 * 111.00186 * 174.16111 * 9 8 7 11 11 C 1.52997 * 109.47515 * 294.21459 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00241 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99936 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00183 * 17 15 13 21 21 C 1.46847 * 111.19775 * 298.26502 * 9 8 7 22 22 H 1.09005 * 109.47487 * 300.00426 * 1 2 3 23 23 H 1.09006 * 109.47237 * 60.00120 * 1 2 3 24 24 H 1.08999 * 109.47429 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46954 * 239.99395 * 2 1 3 26 26 H 1.09006 * 109.47237 * 119.99880 * 2 1 3 27 27 H 1.09005 * 109.52267 * 297.51649 * 6 4 3 28 28 H 1.08997 * 109.52427 * 57.70721 * 6 4 3 29 29 H 1.09001 * 109.50384 * 62.28088 * 7 6 4 30 30 H 1.08997 * 109.50985 * 182.36373 * 7 6 4 31 31 H 1.09004 * 109.46225 * 299.16191 * 8 7 6 32 32 H 1.08997 * 109.46625 * 179.19631 * 8 7 6 33 33 H 1.09002 * 109.47104 * 174.21192 * 10 9 8 34 34 H 1.08998 * 109.46828 * 54.22024 * 10 9 8 35 35 H 1.09002 * 109.47153 * 59.99762 * 11 10 9 36 36 H 1.09001 * 109.46832 * 299.99953 * 11 10 9 37 37 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.45950 * 181.75625 * 21 9 8 41 41 H 1.09000 * 109.46321 * 301.72181 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5057 -0.0008 5 1 4.2324 0.8779 0.8398 6 6 4.3770 0.8462 -1.3107 7 6 5.9038 0.7320 -1.3280 8 6 6.5166 2.1247 -1.1639 9 7 6.0661 2.7129 0.1040 10 6 6.7425 3.9912 0.3611 11 6 8.2364 3.7429 0.5792 12 6 8.9407 5.0744 0.8476 13 6 10.4123 4.8299 1.0617 14 1 10.8057 3.8253 1.0118 15 6 11.2564 5.8887 1.3214 16 7 10.7775 7.1120 1.3817 17 14 13.0804 5.5856 1.5875 18 1 13.7899 5.6616 0.2852 19 1 13.6242 6.6158 2.5084 20 1 13.2769 4.2384 2.1805 21 6 4.6068 2.8760 0.1247 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9365 -0.1482 -1.3839 28 1 4.0477 1.4543 -2.1532 29 1 6.2302 0.0920 -0.5082 30 1 6.2259 0.3015 -2.2761 31 1 6.2010 2.7602 -1.9914 32 1 7.6037 2.0453 -1.1614 33 1 6.3174 4.4545 1.2515 34 1 6.6051 4.6533 -0.4937 35 1 8.6615 3.2796 -0.3112 36 1 8.3737 3.0808 1.4341 37 1 8.8035 5.7368 -0.0070 38 1 8.5156 5.5373 1.7381 39 1 11.3714 7.8570 1.5640 40 1 4.3069 3.3423 1.0633 41 1 4.3001 3.5079 -0.7088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394816068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:10 Heat of formation + Delta-G solvation = -29.522387 kcal Electronic energy + Delta-G solvation = -17021.267067 eV Core-core repulsion = 14446.950733 eV Total energy + Delta-G solvation = -2574.316333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.96986 -34.82522 -33.18297 -32.88407 -31.07196 -30.67593 -26.72723 -24.27221 -24.14822 -22.80414 -22.00433 -19.94123 -19.76828 -16.69655 -16.19720 -15.70254 -15.27653 -15.06315 -14.83228 -14.52293 -14.28336 -13.91394 -13.62892 -13.37161 -12.76273 -12.64632 -12.23944 -12.00345 -11.79469 -11.69849 -11.52733 -11.26921 -10.96848 -10.93373 -10.76270 -10.60680 -10.46575 -10.33121 -9.90964 -9.55666 -9.30975 -9.03255 -8.32177 -8.10525 -7.84829 -5.97424 -3.99455 1.44208 2.39591 3.33534 3.39660 3.43402 4.14138 4.48650 4.53175 4.58768 4.65410 4.70089 4.94181 5.03296 5.11623 5.26516 5.37327 5.38358 5.45274 5.49625 5.57443 5.61029 5.65357 5.74484 5.79683 5.83743 5.89452 6.04776 6.10566 6.24825 6.32968 6.71860 6.77823 7.13416 7.33861 7.38250 7.71085 7.86094 8.03167 8.46348 9.07805 9.64404 11.14072 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.053101 B = 0.003219 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.171163 B = 8696.050142 C = 8994.434023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 S -0.267 6.267 4 C -0.045 4.045 5 H 0.095 0.905 6 C -0.113 4.113 7 C -0.114 4.114 8 C 0.049 3.951 9 N -0.535 5.535 10 C 0.058 3.942 11 C -0.104 4.104 12 C 0.021 3.979 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.076 3.924 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.030 0.970 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.013 0.987 38 H 0.016 0.984 39 H 0.260 0.740 40 H 0.082 0.918 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.040 -14.502 -5.072 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.236 4.236 3 S -0.039 6.039 4 C -0.174 4.174 5 H 0.113 0.887 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.078 4.078 9 N -0.260 5.260 10 C -0.069 4.069 11 C -0.142 4.142 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.053 4.053 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.032 0.968 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -18.498 -13.698 -4.640 23.481 hybrid contribution 1.515 -0.591 -0.470 1.693 sum -16.983 -14.289 -5.110 22.775 Atomic orbital electron populations 1.21512 0.92351 1.02390 1.03202 1.23276 0.99975 0.95499 1.04829 1.86851 1.06320 1.12753 1.97997 1.23192 0.91411 1.01321 1.01467 0.88699 1.21899 0.96745 1.00270 0.96351 1.21616 0.94076 0.97552 1.02071 1.22172 1.01155 0.94548 0.89965 1.61986 1.03624 1.27175 1.33253 1.22295 0.96704 0.87928 1.00017 1.21658 0.90973 1.00957 1.00586 1.19077 0.94672 0.91025 0.96844 1.21250 0.93070 0.93273 1.48030 0.92691 1.25031 0.98762 0.95204 0.95543 1.69965 1.35200 0.98648 1.49800 0.86602 0.85495 0.77947 0.78016 1.20711 1.21236 1.19862 1.21757 0.88357 0.93310 1.01876 0.91678 0.91732 0.91230 0.90180 0.90188 0.92087 0.91097 0.91023 0.91273 0.95055 0.89524 0.91075 0.95200 0.93426 0.92573 0.96830 0.96574 0.93042 0.90008 0.94336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.92 37.15 0.37 -0.55 16 2 C -0.09 -0.70 6.37 37.15 0.24 -0.47 16 3 S -0.27 -2.94 21.15 -107.50 -2.27 -5.21 16 4 C -0.04 -0.51 2.81 -26.65 -0.07 -0.59 16 5 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 6 C -0.11 -1.16 5.17 -26.61 -0.14 -1.30 16 7 C -0.11 -1.24 6.09 -26.65 -0.16 -1.40 16 8 C 0.05 0.68 5.29 -3.83 -0.02 0.66 16 9 N -0.54 -8.13 4.66 -234.67 -1.09 -9.23 16 10 C 0.06 1.02 4.96 -3.83 -0.02 1.00 16 11 C -0.10 -2.17 5.08 -26.73 -0.14 -2.31 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.08 1.02 4.75 -3.83 -0.02 1.01 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.08 0.59 7.23 -51.93 -0.38 0.21 16 26 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.06 0.54 7.05 -51.93 -0.37 0.17 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.27 6.21 -51.93 -0.32 0.95 16 33 H 0.07 1.26 7.99 -51.93 -0.41 0.85 16 34 H 0.03 0.54 8.12 -51.93 -0.42 0.11 16 35 H 0.05 0.97 6.43 -51.93 -0.33 0.64 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.08 1.12 8.02 -51.93 -0.42 0.71 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -30.01 332.88 -10.84 -40.84 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -7.69 Total: -4.54 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.51 Total: -17.19 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.36 Total: -35.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -2.27 Total: -5.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.01 -10.84 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394816068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.318 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds