Wall clock time and date at job start Mon Mar 30 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 S 1.81403 * 109.47323 * 2 1 4 4 C 1.81397 * 102.99705 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.50447 * 305.07282 * 4 3 2 6 6 C 1.53115 * 109.53858 * 65.17793 * 4 3 2 7 7 C 1.53116 * 109.16421 * 177.61129 * 6 4 3 8 8 C 1.53038 * 109.28002 * 302.34749 * 7 6 4 9 9 N 1.46846 * 109.52665 * 59.17159 * 8 7 6 10 10 C 1.46894 * 111.00186 * 174.16111 * 9 8 7 11 11 C 1.52997 * 109.47515 * 294.21459 * 10 9 8 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99611 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00327 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 90.00241 * 17 15 13 19 19 H 1.48494 * 109.47178 * 209.99936 * 17 15 13 20 20 H 1.48500 * 109.47075 * 330.00183 * 17 15 13 21 21 C 1.46847 * 111.19775 * 298.26502 * 9 8 7 22 22 H 1.09005 * 109.47487 * 300.00426 * 1 2 3 23 23 H 1.09006 * 109.47237 * 60.00120 * 1 2 3 24 24 H 1.08999 * 109.47429 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46954 * 239.99395 * 2 1 3 26 26 H 1.09006 * 109.47237 * 119.99880 * 2 1 3 27 27 H 1.09005 * 109.52267 * 297.51649 * 6 4 3 28 28 H 1.08997 * 109.52427 * 57.70721 * 6 4 3 29 29 H 1.09001 * 109.50384 * 62.28088 * 7 6 4 30 30 H 1.08997 * 109.50985 * 182.36373 * 7 6 4 31 31 H 1.09004 * 109.46225 * 299.16191 * 8 7 6 32 32 H 1.08997 * 109.46625 * 179.19631 * 8 7 6 33 33 H 1.09002 * 109.47104 * 174.21192 * 10 9 8 34 34 H 1.08998 * 109.46828 * 54.22024 * 10 9 8 35 35 H 1.09002 * 109.47153 * 59.99762 * 11 10 9 36 36 H 1.09001 * 109.46832 * 299.99953 * 11 10 9 37 37 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 38 38 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 39 39 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.45950 * 181.75625 * 21 9 8 41 41 H 1.09000 * 109.46321 * 301.72181 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5057 -0.0008 5 1 4.2324 0.8779 0.8398 6 6 4.3770 0.8462 -1.3107 7 6 5.9038 0.7320 -1.3280 8 6 6.5166 2.1247 -1.1639 9 7 6.0661 2.7129 0.1040 10 6 6.7425 3.9912 0.3611 11 6 8.2364 3.7429 0.5792 12 6 8.9407 5.0744 0.8476 13 6 10.4123 4.8299 1.0617 14 1 10.8057 3.8253 1.0118 15 6 11.2564 5.8887 1.3214 16 7 10.7775 7.1120 1.3817 17 14 13.0804 5.5856 1.5875 18 1 13.7899 5.6616 0.2852 19 1 13.6242 6.6158 2.5084 20 1 13.2769 4.2384 2.1805 21 6 4.6068 2.8760 0.1247 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8932 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.9365 -0.1482 -1.3839 28 1 4.0477 1.4543 -2.1532 29 1 6.2302 0.0920 -0.5082 30 1 6.2259 0.3015 -2.2761 31 1 6.2010 2.7602 -1.9914 32 1 7.6037 2.0453 -1.1614 33 1 6.3174 4.4545 1.2515 34 1 6.6051 4.6533 -0.4937 35 1 8.6615 3.2796 -0.3112 36 1 8.3737 3.0808 1.4341 37 1 8.8035 5.7368 -0.0070 38 1 8.5156 5.5373 1.7381 39 1 11.3714 7.8570 1.5640 40 1 4.3069 3.3423 1.0633 41 1 4.3001 3.5079 -0.7088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394816068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:10 Heat of formation + Delta-G solvation = -45.981193 kcal Electronic energy + Delta-G solvation = -17021.980774 eV Core-core repulsion = 14446.950733 eV Total energy + Delta-G solvation = -2575.030041 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10162 -36.41362 -34.79850 -33.66828 -32.58391 -31.90835 -28.50296 -25.77154 -24.94891 -23.78113 -23.49829 -21.59461 -20.83769 -18.52700 -17.46507 -16.82055 -16.46392 -16.38913 -16.00540 -15.68130 -15.42149 -14.97311 -14.81460 -14.64241 -14.23346 -13.68349 -13.62880 -13.28955 -13.11760 -12.83230 -12.68785 -12.51038 -12.43214 -12.38042 -12.21212 -11.85510 -11.68930 -11.61133 -11.34985 -11.33520 -10.99308 -10.70871 -10.54941 -9.35525 -8.70124 -8.20274 -6.31451 0.63461 1.39879 1.41556 1.52888 1.62265 2.40864 2.94332 3.12842 3.60390 3.72546 3.96444 4.03027 4.07049 4.11028 4.20151 4.26237 4.38693 4.47681 4.55228 4.61331 4.67913 4.69985 4.83037 4.84935 4.88019 4.92544 4.96561 5.03085 5.05901 5.10121 5.23950 5.26875 5.35060 5.51662 5.73466 5.85376 6.02319 6.12284 6.26437 6.85451 7.37819 8.91823 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.053101 B = 0.003219 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.171163 B = 8696.050142 C = 8994.434023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 S -0.305 6.305 4 C -0.035 4.035 5 H 0.092 0.908 6 C -0.107 4.107 7 C -0.106 4.106 8 C 0.045 3.955 9 N -0.538 5.538 10 C 0.068 3.932 11 C -0.086 4.086 12 C 0.025 3.975 13 C -0.542 4.542 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.263 1.263 21 C 0.078 3.922 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.024 0.976 35 H 0.053 0.947 36 H 0.052 0.948 37 H -0.011 1.011 38 H -0.009 1.009 39 H 0.264 0.736 40 H 0.074 0.926 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.183 -16.796 -5.560 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.225 4.225 3 S -0.077 6.077 4 C -0.164 4.164 5 H 0.111 0.889 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.083 4.083 9 N -0.263 5.263 10 C -0.060 4.060 11 C -0.124 4.124 12 C -0.012 4.012 13 C -0.580 4.580 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.051 4.051 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.008 0.992 38 H 0.009 0.991 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.654 -16.011 -5.135 25.114 hybrid contribution 1.484 0.130 -0.319 1.523 sum -17.171 -15.881 -5.453 24.016 Atomic orbital electron populations 1.21529 0.91373 1.03630 1.02758 1.23377 1.00621 0.92777 1.05738 1.87020 1.06193 1.16380 1.98099 1.23046 0.91507 0.99683 1.02202 0.88932 1.21871 0.96187 1.01228 0.95326 1.21584 0.94358 0.95443 1.03175 1.22263 1.00692 0.96264 0.89035 1.61939 1.04642 1.25306 1.34438 1.22013 0.94929 0.89326 0.99698 1.21380 0.92713 0.97789 1.00556 1.18975 0.94551 0.93093 0.94615 1.21685 0.94403 0.93689 1.48196 0.92172 1.26010 1.04158 0.94825 0.94990 1.70100 1.37203 0.99685 1.50526 0.85430 0.78948 0.78271 0.78304 1.19670 1.20712 1.18695 1.21745 0.87192 0.94880 1.01264 0.92279 0.92061 0.89018 0.88950 0.89516 0.89891 0.91372 0.91046 0.89185 0.95234 0.90722 0.91494 0.95774 0.92870 0.92875 0.99227 0.99057 0.92760 0.90769 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.92 71.98 0.71 -0.79 16 2 C -0.08 -1.05 6.37 71.98 0.46 -0.59 16 3 S -0.30 -6.33 21.15 -56.49 -1.20 -7.52 16 4 C -0.04 -0.76 2.81 30.65 0.09 -0.68 16 5 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 6 C -0.11 -1.93 5.17 30.67 0.16 -1.77 16 7 C -0.11 -2.08 6.09 30.65 0.19 -1.89 16 8 C 0.05 1.20 5.29 86.33 0.46 1.65 16 9 N -0.54 -16.21 4.66 -896.37 -4.17 -20.39 16 10 C 0.07 2.47 4.96 86.30 0.43 2.90 16 11 C -0.09 -3.68 5.08 30.59 0.16 -3.53 16 12 C 0.03 1.37 4.97 29.85 0.15 1.52 16 13 C -0.54 -31.53 9.11 25.60 0.23 -31.29 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 15 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 16 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 17 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 21 C 0.08 2.08 4.75 86.33 0.41 2.49 16 22 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 23 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 24 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.09 1.05 7.23 -2.39 -0.02 1.04 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.18 7.05 -2.38 -0.02 1.16 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.07 2.15 6.21 -2.39 -0.01 2.13 16 33 H 0.07 2.45 7.99 -2.39 -0.02 2.44 16 34 H 0.02 0.89 8.12 -2.39 -0.02 0.87 16 35 H 0.05 2.19 6.43 -2.39 -0.02 2.18 16 36 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 37 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 38 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 39 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.07 2.06 8.02 -2.39 -0.02 2.05 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -64.82 332.88 1.79 -63.03 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.95 Total: 7.31 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 3.90 Total: -31.65 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -3.89 Total: -78.04 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: -6.33 SS G_CDS: -1.20 Total: -7.52 kcal Total: -64.82 1.79 -63.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394816068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.044 kcal (2) G-P(sol) polarization free energy of solvation -64.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds