Wall clock time and date at job start Mon Mar 30 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81407 * 102.99861 * 2 1 4 4 C 1.53125 * 109.52153 * 174.99901 * 3 2 1 5 5 C 1.53031 * 109.27565 * 177.62374 * 4 3 2 6 6 N 1.46847 * 109.52562 * 300.82032 * 5 4 3 7 7 C 1.46905 * 111.00382 * 185.83566 * 6 5 4 8 8 C 1.52996 * 109.47327 * 169.99981 * 7 6 5 9 9 C 1.52997 * 109.47131 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47127 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47184 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46926 * 60.00512 * 15 13 11 17 17 H 1.48506 * 109.46961 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47227 * 300.00303 * 15 13 11 19 19 C 1.46854 * 111.19529 * 61.74538 * 6 5 4 20 20 C 1.53035 * 109.52033 * 298.25406 * 19 6 5 21 21 H 1.09001 * 109.47342 * 59.99857 * 1 2 3 22 22 H 1.09008 * 109.46890 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47014 * 299.99779 * 1 2 3 24 24 H 1.08998 * 109.52135 * 54.87905 * 3 2 1 25 25 H 1.09004 * 109.50048 * 57.68386 * 4 3 2 26 26 H 1.08997 * 109.50203 * 297.56722 * 4 3 2 27 27 H 1.08997 * 109.46480 * 180.80510 * 5 4 3 28 28 H 1.08998 * 109.45746 * 60.83073 * 5 4 3 29 29 H 1.09001 * 109.46440 * 50.00426 * 7 6 5 30 30 H 1.08992 * 109.47499 * 290.00842 * 7 6 5 31 31 H 1.09001 * 109.46993 * 60.00228 * 8 7 6 32 32 H 1.09004 * 109.47298 * 300.00642 * 8 7 6 33 33 H 1.09001 * 109.46832 * 60.00325 * 9 8 7 34 34 H 1.08993 * 109.47194 * 299.99846 * 9 8 7 35 35 H 1.09001 * 109.46801 * 300.00272 * 10 9 8 36 36 H 1.09001 * 109.46998 * 59.99868 * 10 9 8 37 37 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.46338 * 58.27437 * 19 6 5 39 39 H 1.09001 * 109.46277 * 178.24448 * 19 6 5 40 40 H 1.08996 * 109.50754 * 299.24032 * 20 19 6 41 41 H 1.09001 * 109.50317 * 179.11892 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7380 1.9428 0.1258 5 6 4.0810 3.4329 0.0656 6 7 3.6093 3.9941 -1.2068 7 6 4.0427 5.3894 -1.3597 8 6 3.7537 5.8598 -2.7866 9 6 4.2056 7.3128 -2.9460 10 6 3.9159 7.7835 -4.3727 11 6 4.3605 9.2148 -4.5296 12 1 4.8056 9.7365 -3.6952 13 6 4.2001 9.8580 -5.7385 14 7 3.6586 9.2225 -6.7547 15 14 4.7518 11.6320 -5.9331 16 1 6.2094 11.7292 -5.6657 17 1 4.4717 12.0884 -7.3182 18 1 4.0138 12.4884 -4.9703 19 6 2.1504 3.8800 -1.3290 20 6 1.7497 2.4031 -1.3105 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7280 2.2554 0.8403 25 1 4.2337 1.4218 -0.6934 26 1 4.0743 1.5300 1.0769 27 1 5.1609 3.5603 0.1405 28 1 3.5960 3.9509 0.8930 29 1 5.1125 5.4611 -1.1632 30 1 3.5007 6.0178 -0.6531 31 1 2.6839 5.7881 -2.9831 32 1 4.2958 5.2314 -3.4932 33 1 5.2754 7.3841 -2.7496 34 1 3.6638 7.9415 -2.2394 35 1 4.4575 7.1548 -5.0796 36 1 2.8461 7.7121 -4.5687 37 1 3.5454 9.6751 -7.6050 38 1 1.6745 4.3959 -0.4951 39 1 1.8280 4.3319 -2.2671 40 1 2.2141 1.8894 -2.1522 41 1 0.6655 2.3192 -1.3856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395379157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:30 Heat of formation + Delta-G solvation = -29.980325 kcal Electronic energy + Delta-G solvation = -16954.889439 eV Core-core repulsion = 14380.553248 eV Total energy + Delta-G solvation = -2574.336191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.16506 -35.32473 -33.43845 -31.84280 -31.13887 -29.14846 -28.36087 -25.30420 -23.56548 -23.20442 -21.08419 -20.03122 -19.92273 -16.86209 -16.19042 -15.75101 -15.37260 -14.80695 -14.51019 -14.45417 -14.17626 -14.03611 -13.96921 -13.54935 -12.87231 -12.55796 -12.53817 -12.05563 -11.75409 -11.65285 -11.39207 -11.28524 -11.08271 -10.88801 -10.72368 -10.48243 -10.45766 -10.30045 -9.98148 -9.58279 -9.23862 -8.99840 -8.31916 -8.29433 -7.94304 -5.96439 -3.98719 1.41558 2.30491 3.34821 3.39052 3.41561 3.86579 4.42077 4.45966 4.48811 4.81547 4.82318 4.87509 4.98882 5.16080 5.25718 5.31475 5.36252 5.37578 5.39064 5.47103 5.54846 5.63858 5.77193 5.82944 5.91047 5.92086 6.08667 6.18047 6.26705 6.53624 6.83212 6.98497 7.08385 7.12385 7.26083 7.72253 7.88615 8.04736 8.47474 9.08647 9.65002 11.14900 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.050902 B = 0.002961 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.942799 B = 9455.070416 C = 9808.597403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.269 6.269 3 C -0.049 4.049 4 C -0.095 4.095 5 C 0.060 3.940 6 N -0.538 5.538 7 C 0.057 3.943 8 C -0.114 4.114 9 C -0.109 4.109 10 C 0.022 3.978 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.055 3.945 20 C -0.110 4.110 21 H 0.078 0.922 22 H 0.099 0.901 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.260 0.740 38 H 0.030 0.970 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 -16.921 15.394 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.040 6.040 3 C -0.178 4.178 4 C -0.134 4.134 5 C -0.070 4.070 6 N -0.263 5.263 7 C -0.070 4.070 8 C -0.152 4.152 9 C -0.147 4.147 10 C -0.015 4.015 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.075 4.075 20 C -0.150 4.150 21 H 0.097 0.903 22 H 0.117 0.883 23 H 0.093 0.907 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.099 0.901 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.931 -18.106 14.856 23.748 hybrid contribution -1.031 2.493 0.495 2.743 sum -4.962 -15.613 15.350 22.450 Atomic orbital electron populations 1.23376 0.94345 1.06304 1.04947 1.86845 1.07286 1.11921 1.97934 1.23267 1.00575 0.92811 1.01120 1.21414 0.92173 0.96697 1.03123 1.22059 1.00706 0.93814 0.90374 1.61961 1.11601 1.19756 1.32962 1.22227 1.00292 0.86144 0.98342 1.21681 1.01104 0.97971 0.94422 1.21599 0.99600 0.92751 1.00792 1.19079 0.96809 0.95628 0.89999 1.21257 1.40103 0.97790 0.96764 0.92847 1.25031 0.95397 0.98031 0.96055 1.69959 1.44454 1.36926 1.02238 0.86673 0.79182 0.85203 0.77030 1.20252 1.21293 1.20300 1.22154 0.88015 0.95492 1.01835 1.21927 1.00352 0.95942 0.96776 0.90299 0.88259 0.90710 0.90011 0.89980 0.90806 0.90096 0.95040 0.90884 0.95173 0.92627 0.91608 0.93449 0.93753 0.96602 0.96792 0.92994 0.95150 0.89385 0.89614 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.47 101.05 1.06 0.20 16 2 S -0.27 -2.62 21.80 -107.50 -2.34 -4.96 16 3 C -0.05 -0.46 2.72 -26.61 -0.07 -0.54 16 4 C -0.10 -0.91 5.39 -26.65 -0.14 -1.06 16 5 C 0.06 0.63 5.46 -3.84 -0.02 0.61 16 6 N -0.54 -6.79 4.66 -234.67 -1.09 -7.89 16 7 C 0.06 0.80 4.96 -3.82 -0.02 0.79 16 8 C -0.11 -1.95 5.14 -26.73 -0.14 -2.09 16 9 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 12 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 15 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.05 0.64 5.29 -3.83 -0.02 0.62 16 20 C -0.11 -1.11 5.26 -26.65 -0.14 -1.25 16 21 H 0.08 0.53 7.23 -51.92 -0.38 0.15 16 22 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 23 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 28 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 1.00 7.99 -51.93 -0.41 0.58 16 30 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 1.12 6.21 -51.93 -0.32 0.79 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.58 7.06 -51.93 -0.37 0.21 16 LS Contribution 332.94 15.07 5.02 5.02 Total: -1.00 -30.31 332.94 -10.58 -40.88 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -7.69 Total: -4.82 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -0.18 Total: -18.48 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.36 Total: -34.52 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.34 Total: -4.96 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.31 -10.58 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395379157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.902 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds