Wall clock time and date at job start Mon Mar 30 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81407 * 102.99861 * 2 1 4 4 C 1.53125 * 109.52153 * 174.99901 * 3 2 1 5 5 C 1.53031 * 109.27565 * 177.62374 * 4 3 2 6 6 N 1.46847 * 109.52562 * 300.82032 * 5 4 3 7 7 C 1.46905 * 111.00382 * 185.83566 * 6 5 4 8 8 C 1.52996 * 109.47327 * 169.99981 * 7 6 5 9 9 C 1.52997 * 109.47131 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47127 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47184 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46926 * 60.00512 * 15 13 11 17 17 H 1.48506 * 109.46961 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47227 * 300.00303 * 15 13 11 19 19 C 1.46854 * 111.19529 * 61.74538 * 6 5 4 20 20 C 1.53035 * 109.52033 * 298.25406 * 19 6 5 21 21 H 1.09001 * 109.47342 * 59.99857 * 1 2 3 22 22 H 1.09008 * 109.46890 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47014 * 299.99779 * 1 2 3 24 24 H 1.08998 * 109.52135 * 54.87905 * 3 2 1 25 25 H 1.09004 * 109.50048 * 57.68386 * 4 3 2 26 26 H 1.08997 * 109.50203 * 297.56722 * 4 3 2 27 27 H 1.08997 * 109.46480 * 180.80510 * 5 4 3 28 28 H 1.08998 * 109.45746 * 60.83073 * 5 4 3 29 29 H 1.09001 * 109.46440 * 50.00426 * 7 6 5 30 30 H 1.08992 * 109.47499 * 290.00842 * 7 6 5 31 31 H 1.09001 * 109.46993 * 60.00228 * 8 7 6 32 32 H 1.09004 * 109.47298 * 300.00642 * 8 7 6 33 33 H 1.09001 * 109.46832 * 60.00325 * 9 8 7 34 34 H 1.08993 * 109.47194 * 299.99846 * 9 8 7 35 35 H 1.09001 * 109.46801 * 300.00272 * 10 9 8 36 36 H 1.09001 * 109.46998 * 59.99868 * 10 9 8 37 37 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.46338 * 58.27437 * 19 6 5 39 39 H 1.09001 * 109.46277 * 178.24448 * 19 6 5 40 40 H 1.08996 * 109.50754 * 299.24032 * 20 19 6 41 41 H 1.09001 * 109.50317 * 179.11892 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7380 1.9428 0.1258 5 6 4.0810 3.4329 0.0656 6 7 3.6093 3.9941 -1.2068 7 6 4.0427 5.3894 -1.3597 8 6 3.7537 5.8598 -2.7866 9 6 4.2056 7.3128 -2.9460 10 6 3.9159 7.7835 -4.3727 11 6 4.3605 9.2148 -4.5296 12 1 4.8056 9.7365 -3.6952 13 6 4.2001 9.8580 -5.7385 14 7 3.6586 9.2225 -6.7547 15 14 4.7518 11.6320 -5.9331 16 1 6.2094 11.7292 -5.6657 17 1 4.4717 12.0884 -7.3182 18 1 4.0138 12.4884 -4.9703 19 6 2.1504 3.8800 -1.3290 20 6 1.7497 2.4031 -1.3105 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.7280 2.2554 0.8403 25 1 4.2337 1.4218 -0.6934 26 1 4.0743 1.5300 1.0769 27 1 5.1609 3.5603 0.1405 28 1 3.5960 3.9509 0.8930 29 1 5.1125 5.4611 -1.1632 30 1 3.5007 6.0178 -0.6531 31 1 2.6839 5.7881 -2.9831 32 1 4.2958 5.2314 -3.4932 33 1 5.2754 7.3841 -2.7496 34 1 3.6638 7.9415 -2.2394 35 1 4.4575 7.1548 -5.0796 36 1 2.8461 7.7121 -4.5687 37 1 3.5454 9.6751 -7.6050 38 1 1.6745 4.3959 -0.4951 39 1 1.8280 4.3319 -2.2671 40 1 2.2141 1.8894 -2.1522 41 1 0.6655 2.3192 -1.3856 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395379157.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:30 Heat of formation + Delta-G solvation = -46.758127 kcal Electronic energy + Delta-G solvation = -16955.616979 eV Core-core repulsion = 14380.553248 eV Total energy + Delta-G solvation = -2575.063731 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.09562 -36.80052 -35.10046 -33.49321 -32.01159 -30.08113 -29.66300 -26.85132 -24.90606 -24.14746 -22.57593 -21.54822 -20.86859 -18.41550 -17.67319 -16.71372 -16.55740 -16.42628 -15.79518 -15.37925 -15.26187 -14.88020 -14.75837 -14.40788 -14.24340 -13.91887 -13.80133 -13.38867 -13.20695 -12.98011 -12.74887 -12.46570 -12.28506 -12.21411 -12.13106 -12.10409 -11.73948 -11.45699 -11.31767 -11.23112 -11.00355 -10.68652 -10.54519 -9.26847 -8.69248 -8.19424 -6.31076 0.72854 1.39594 1.43083 1.51020 1.64195 2.41158 2.90038 3.13186 3.63425 3.67243 4.02708 4.03406 4.16564 4.25455 4.30926 4.34318 4.38145 4.45305 4.54239 4.56589 4.63176 4.69012 4.77381 4.78986 4.89495 4.92977 4.93800 5.05786 5.10896 5.22693 5.27973 5.30845 5.37840 5.55913 5.78652 5.87538 6.11791 6.18675 6.26753 6.86554 7.38263 8.92325 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.050902 B = 0.002961 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.942799 B = 9455.070416 C = 9808.597403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.307 6.307 3 C -0.040 4.040 4 C -0.090 4.090 5 C 0.061 3.939 6 N -0.551 5.551 7 C 0.068 3.932 8 C -0.103 4.103 9 C -0.096 4.096 10 C 0.024 3.976 11 C -0.546 4.546 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.266 1.266 17 H -0.283 1.283 18 H -0.266 1.266 19 C 0.055 3.945 20 C -0.103 4.103 21 H 0.082 0.918 22 H 0.110 0.890 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.050 0.950 35 H -0.012 1.012 36 H -0.012 1.012 37 H 0.264 0.736 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.757 -16.570 17.056 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.078 6.078 3 C -0.169 4.169 4 C -0.129 4.129 5 C -0.068 4.068 6 N -0.276 5.276 7 C -0.060 4.060 8 C -0.141 4.141 9 C -0.134 4.134 10 C -0.013 4.013 11 C -0.584 4.584 12 H 0.079 0.921 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.075 4.075 20 C -0.143 4.143 21 H 0.101 0.899 22 H 0.129 0.871 23 H 0.104 0.896 24 H 0.108 0.892 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.006 0.994 36 H 0.007 0.993 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.945 -17.768 16.538 24.592 hybrid contribution -1.070 2.324 -0.049 2.559 sum -5.015 -15.444 16.490 23.143 Atomic orbital electron populations 1.23433 0.91652 1.07323 1.05670 1.86988 1.10363 1.12442 1.97999 1.23184 1.00481 0.92423 1.00794 1.21372 0.92254 0.95991 1.03289 1.22108 1.01158 0.94131 0.89385 1.61907 1.12249 1.18721 1.34676 1.22008 1.00877 0.87224 0.95864 1.21500 1.00548 0.95469 0.96627 1.21398 1.00039 0.94979 0.97026 1.19008 0.94601 0.94737 0.92981 1.21728 1.40306 0.99028 0.97297 0.92139 1.26027 0.95260 1.03129 0.95634 1.70102 1.45500 1.39080 1.02847 0.85490 0.79169 0.79061 0.77271 1.19102 1.20819 1.19073 1.22148 0.87595 0.96485 1.01285 1.21851 1.01032 0.94694 0.96724 0.89893 0.87139 0.89627 0.89181 0.91313 0.89481 0.89457 0.94145 0.90166 0.94568 0.92972 0.92830 0.92956 0.93151 0.99360 0.99335 0.92776 0.94432 0.90944 0.91130 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.47 113.37 1.19 -0.17 16 2 S -0.31 -5.58 21.80 -56.49 -1.23 -6.82 16 3 C -0.04 -0.70 2.72 30.68 0.08 -0.61 16 4 C -0.09 -1.59 5.39 30.65 0.17 -1.43 16 5 C 0.06 1.16 5.46 86.32 0.47 1.64 16 6 N -0.55 -13.26 4.66 -896.37 -4.17 -17.43 16 7 C 0.07 1.82 4.96 86.30 0.43 2.25 16 8 C -0.10 -3.55 5.14 30.59 0.16 -3.39 16 9 C -0.10 -3.99 5.15 30.60 0.16 -3.83 16 10 C 0.02 1.29 4.97 29.85 0.15 1.44 16 11 C -0.55 -31.75 9.11 25.60 0.23 -31.52 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 13 C 0.00 -0.18 5.46 84.65 0.46 0.29 16 14 N -0.93 -58.11 13.29 21.45 0.28 -57.83 16 15 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 C 0.05 1.22 5.29 86.32 0.46 1.68 16 20 C -0.10 -1.98 5.26 30.65 0.16 -1.82 16 21 H 0.08 0.95 7.23 -2.39 -0.02 0.93 16 22 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.09 1.55 8.01 -2.39 -0.02 1.53 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 2.04 7.99 -2.39 -0.02 2.03 16 30 H 0.04 0.94 8.12 -2.39 -0.02 0.92 16 31 H 0.05 1.81 6.43 -2.39 -0.02 1.79 16 32 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 1.83 6.21 -2.39 -0.01 1.82 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.28 7.06 -2.39 -0.02 1.26 16 Total: -1.00 -65.18 332.94 1.97 -63.21 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.95 Total: 7.55 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 4.11 Total: -35.48 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -3.89 Total: -75.26 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -1.23 Total: -6.82 kcal Total: -65.18 1.97 -63.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395379157.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.457 kcal (2) G-P(sol) polarization free energy of solvation -65.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds