Wall clock time and date at job start Mon Mar 30 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86802 * 119.99674 * 2 1 4 4 H 1.48492 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47094 * 300.00087 * 3 2 1 6 6 H 1.48505 * 109.47181 * 60.00009 * 3 2 1 7 7 C 1.39940 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00165 * 197.43207 * 7 2 1 9 9 C 1.41334 * 119.99959 * 17.44021 * 7 2 1 10 10 C 1.40718 * 120.25657 * 24.92072 * 9 7 2 11 11 C 1.36581 * 119.88306 * 180.02562 * 10 9 7 12 12 C 1.50693 * 119.79257 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47534 * 90.00024 * 12 11 10 14 14 C 1.52991 * 109.47347 * 180.02562 * 13 12 11 15 15 Cl 1.80298 * 109.47212 * 180.02562 * 14 13 12 16 16 C 1.38686 * 120.41454 * 0.27532 * 11 10 9 17 17 C 1.38553 * 120.52025 * 359.44456 * 16 11 10 18 18 C 1.37860 * 120.10772 * 0.55380 * 17 16 11 19 19 Cl 1.73601 * 120.20681 * 179.70358 * 18 17 16 20 20 H 0.96993 * 120.00643 * 4.50594 * 1 2 3 21 21 H 1.07997 * 120.05921 * 0.04461 * 10 9 7 22 22 H 1.09005 * 109.46843 * 329.99866 * 12 11 10 23 23 H 1.09006 * 109.47212 * 210.00537 * 12 11 10 24 24 H 1.09001 * 109.46702 * 59.99940 * 13 12 11 25 25 H 1.09004 * 109.46772 * 300.00512 * 13 12 11 26 26 H 1.09001 * 109.47283 * 60.00278 * 14 13 12 27 27 H 1.08995 * 109.47352 * 299.99914 * 14 13 12 28 28 H 1.07996 * 119.73758 * 179.72445 * 16 11 10 29 29 H 1.08003 * 119.94522 * 180.27916 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0509 -1.2333 0.2807 9 6 1.3502 -2.4079 -0.3658 10 6 0.2203 -2.3677 -1.2036 11 6 -0.4099 -3.5281 -1.5524 12 6 -1.6193 -3.4827 -2.4502 13 6 -1.1745 -3.5836 -3.9106 14 6 -2.4024 -3.5369 -4.8222 15 17 -1.8782 -3.6566 -6.5431 16 6 0.0531 -4.7475 -1.0812 17 6 1.1674 -4.8074 -0.2600 18 6 1.8201 -3.6494 0.1055 19 17 3.2119 -3.7208 1.1406 20 1 -0.4851 0.8373 -0.0660 21 1 -0.1476 -1.4209 -1.5705 22 1 -2.1509 -2.5436 -2.2964 23 1 -2.2796 -4.3170 -2.2130 24 1 -0.6429 -4.5227 -4.0644 25 1 -0.5143 -2.7494 -4.1478 26 1 -2.9336 -2.5976 -4.6683 27 1 -3.0629 -4.3709 -4.5851 28 1 -0.4563 -5.6580 -1.3603 29 1 1.5227 -5.7624 0.0979 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396082264.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:15 Heat of formation + Delta-G solvation = -31.017495 kcal Electronic energy + Delta-G solvation = -14441.748904 eV Core-core repulsion = 11800.815250 eV Total energy + Delta-G solvation = -2640.933654 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.09141 -36.13263 -35.19485 -34.34265 -33.40638 -30.00321 -29.61269 -25.71482 -25.15722 -21.65035 -21.26919 -19.70216 -17.26657 -15.64968 -15.29165 -14.94350 -14.40881 -13.98496 -13.83465 -13.22225 -12.74789 -12.31807 -12.16912 -12.01474 -11.55493 -11.35259 -11.18686 -10.98446 -10.80785 -10.50504 -10.45123 -10.25926 -10.10848 -9.93382 -9.69502 -9.30702 -9.24253 -7.58980 -7.33366 -6.88154 -4.48479 2.32638 2.60753 2.77515 3.03577 3.08902 3.12312 3.70160 3.87254 4.44803 4.93555 4.94937 5.33916 5.43827 5.61198 5.86055 5.90028 6.10358 6.22364 6.35326 6.42930 6.57309 6.90751 7.04544 7.12639 7.35108 7.56261 7.77359 7.91744 8.08185 8.43728 8.69454 8.74305 10.04199 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.006262 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.987310 B = 4470.026906 C = 5677.450022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.446 4.446 8 H 0.087 0.913 9 C 0.118 3.882 10 C -0.146 4.146 11 C -0.070 4.070 12 C -0.069 4.069 13 C -0.122 4.122 14 C -0.026 4.026 15 Cl -0.201 7.201 16 C -0.231 4.231 17 C -0.079 4.079 18 C -0.141 4.141 19 Cl -0.121 7.121 20 H 0.282 0.718 21 H 0.124 0.876 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 -2.913 -5.497 7.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.474 4.474 8 H 0.106 0.894 9 C 0.115 3.885 10 C -0.165 4.165 11 C -0.071 4.071 12 C -0.107 4.107 13 C -0.160 4.160 14 C -0.089 4.089 15 Cl -0.175 7.175 16 C -0.251 4.251 17 C -0.098 4.098 18 C -0.169 4.169 19 Cl -0.093 7.093 20 H 0.093 0.907 21 H 0.142 0.858 22 H 0.085 0.915 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.889 -2.754 -5.457 7.245 hybrid contribution 0.424 0.715 0.107 0.838 sum -3.466 -2.039 -5.350 6.693 Atomic orbital electron populations 1.69823 1.07607 1.29690 1.34112 1.25917 0.94707 1.01461 0.92010 0.86280 0.81280 0.80787 0.78656 1.18155 1.19567 1.19869 1.19724 0.98410 0.90831 1.38475 0.89445 1.17418 0.91194 0.90802 0.89094 1.20888 0.98448 0.96803 1.00373 1.19104 0.96138 0.93846 0.97984 1.20427 0.96386 1.01738 0.92130 1.21894 0.96216 1.04056 0.93802 1.24505 0.99585 1.04603 0.80220 1.98703 1.92821 1.99066 1.26898 1.20113 1.01048 0.95923 1.07975 1.20388 0.95704 0.95471 0.98274 1.20808 0.95399 0.95331 1.05339 1.98200 1.44252 1.98693 1.68175 0.90694 0.85805 0.91488 0.92099 0.90796 0.90554 0.89080 0.89233 0.88778 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.24 10.96 55.55 0.61 -18.63 15 2 C 0.08 1.87 5.14 -17.34 -0.09 1.78 15 3 Si 0.91 18.17 29.60 -169.99 -5.03 13.14 15 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 15 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 7 C -0.45 -11.41 8.53 -37.77 -0.32 -11.74 15 8 H 0.09 2.23 7.12 -52.49 -0.37 1.85 15 9 C 0.12 3.01 5.57 -106.79 -0.60 2.42 15 10 C -0.15 -3.48 8.27 -39.24 -0.32 -3.81 15 11 C -0.07 -1.46 5.09 -105.06 -0.54 -2.00 15 12 C -0.07 -1.12 5.33 -27.89 -0.15 -1.27 15 13 C -0.12 -1.74 5.32 -26.74 -0.14 -1.88 15 14 C -0.03 -0.30 6.66 37.15 0.25 -0.06 15 15 Cl -0.20 -2.57 29.15 -51.86 -1.51 -4.08 15 16 C -0.23 -4.78 9.69 -39.30 -0.38 -5.16 15 17 C -0.08 -1.74 9.82 -39.60 -0.39 -2.13 15 18 C -0.14 -3.39 6.38 -38.73 -0.25 -3.63 15 19 Cl -0.12 -2.66 27.60 -51.86 -1.43 -4.10 15 20 H 0.28 6.24 8.30 -40.82 -0.34 5.90 15 21 H 0.12 3.03 6.18 -52.49 -0.32 2.71 15 22 H 0.07 1.08 8.08 -51.93 -0.42 0.66 15 23 H 0.06 0.88 8.08 -51.93 -0.42 0.46 15 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.08 1.20 8.14 -51.93 -0.42 0.77 15 26 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.09 1.71 8.06 -52.49 -0.42 1.29 15 29 H 0.10 1.92 8.06 -52.48 -0.42 1.49 15 LS Contribution 280.87 15.07 4.23 4.23 Total: -1.00 -25.57 280.87 -9.27 -34.83 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -3.21 Total: 2.07 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -2.93 Total: -27.47 kcal Atomic # 7 Polarization: -19.24 SS G_CDS: 0.61 Total: -18.63 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 17 Polarization: -5.24 SS G_CDS: -2.94 Total: -8.18 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -25.57 -9.27 -34.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396082264.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.816 kcal (2) G-P(sol) polarization free energy of solvation -25.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds