Wall clock time and date at job start Mon Mar 30 2020 06:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86802 * 119.99674 * 2 1 4 4 H 1.48492 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47094 * 300.00087 * 3 2 1 6 6 H 1.48505 * 109.47181 * 60.00009 * 3 2 1 7 7 C 1.39940 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00165 * 197.43207 * 7 2 1 9 9 C 1.41334 * 119.99959 * 17.44021 * 7 2 1 10 10 C 1.40718 * 120.25657 * 24.92072 * 9 7 2 11 11 C 1.36581 * 119.88306 * 180.02562 * 10 9 7 12 12 C 1.50693 * 119.79257 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47534 * 90.00024 * 12 11 10 14 14 C 1.52991 * 109.47347 * 180.02562 * 13 12 11 15 15 Cl 1.80298 * 109.47212 * 180.02562 * 14 13 12 16 16 C 1.38686 * 120.41454 * 0.27532 * 11 10 9 17 17 C 1.38553 * 120.52025 * 359.44456 * 16 11 10 18 18 C 1.37860 * 120.10772 * 0.55380 * 17 16 11 19 19 Cl 1.73601 * 120.20681 * 179.70358 * 18 17 16 20 20 H 0.96993 * 120.00643 * 4.50594 * 1 2 3 21 21 H 1.07997 * 120.05921 * 0.04461 * 10 9 7 22 22 H 1.09005 * 109.46843 * 329.99866 * 12 11 10 23 23 H 1.09006 * 109.47212 * 210.00537 * 12 11 10 24 24 H 1.09001 * 109.46702 * 59.99940 * 13 12 11 25 25 H 1.09004 * 109.46772 * 300.00512 * 13 12 11 26 26 H 1.09001 * 109.47283 * 60.00278 * 14 13 12 27 27 H 1.08995 * 109.47352 * 299.99914 * 14 13 12 28 28 H 1.07996 * 119.73758 * 179.72445 * 16 11 10 29 29 H 1.08003 * 119.94522 * 180.27916 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0509 -1.2333 0.2807 9 6 1.3502 -2.4079 -0.3658 10 6 0.2203 -2.3677 -1.2036 11 6 -0.4099 -3.5281 -1.5524 12 6 -1.6193 -3.4827 -2.4502 13 6 -1.1745 -3.5836 -3.9106 14 6 -2.4024 -3.5369 -4.8222 15 17 -1.8782 -3.6566 -6.5431 16 6 0.0531 -4.7475 -1.0812 17 6 1.1674 -4.8074 -0.2600 18 6 1.8201 -3.6494 0.1055 19 17 3.2119 -3.7208 1.1406 20 1 -0.4851 0.8373 -0.0660 21 1 -0.1476 -1.4209 -1.5705 22 1 -2.1509 -2.5436 -2.2964 23 1 -2.2796 -4.3170 -2.2130 24 1 -0.6429 -4.5227 -4.0644 25 1 -0.5143 -2.7494 -4.1478 26 1 -2.9336 -2.5976 -4.6683 27 1 -3.0629 -4.3709 -4.5851 28 1 -0.4563 -5.6580 -1.3603 29 1 1.5227 -5.7624 0.0979 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396082264.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:14 Heat of formation + Delta-G solvation = -41.329493 kcal Electronic energy + Delta-G solvation = -14442.196066 eV Core-core repulsion = 11800.815250 eV Total energy + Delta-G solvation = -2641.380815 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.77272 -37.25276 -36.80100 -35.93476 -34.91974 -31.65680 -31.21389 -27.35809 -26.65652 -23.07828 -22.82623 -21.30981 -19.05548 -17.36145 -16.67865 -16.45814 -15.79669 -15.53624 -15.06320 -14.65169 -14.36688 -13.85543 -13.57935 -13.52651 -13.21827 -12.86719 -12.65740 -12.61955 -12.31842 -12.01306 -11.74563 -11.65055 -11.56135 -11.20435 -11.18057 -11.04676 -11.01437 -9.38630 -9.06504 -8.65127 -6.35632 0.84094 1.01225 1.38708 1.42656 1.49926 1.52689 1.91843 2.20938 2.68775 3.59307 3.85420 3.97513 4.35365 4.37511 4.51435 4.57895 4.69740 4.79733 4.93409 5.06498 5.12314 5.27987 5.37124 5.41114 5.61072 5.82345 5.98311 6.17737 6.31016 6.61625 6.86800 6.92937 8.29088 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.006262 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.987310 B = 4470.026906 C = 5677.450022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.043 3.957 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.267 1.267 7 C -0.482 4.482 8 H 0.076 0.924 9 C 0.088 3.912 10 C -0.169 4.169 11 C -0.068 4.068 12 C -0.064 4.064 13 C -0.114 4.114 14 C -0.019 4.019 15 Cl -0.211 7.211 16 C -0.224 4.224 17 C -0.087 4.087 18 C -0.165 4.165 19 Cl -0.114 7.114 20 H 0.290 0.710 21 H 0.110 0.890 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.129 0.871 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 -3.601 -6.186 8.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.173 4.173 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.192 1.192 7 C -0.511 4.511 8 H 0.094 0.906 9 C 0.085 3.915 10 C -0.188 4.188 11 C -0.069 4.069 12 C -0.102 4.102 13 C -0.151 4.151 14 C -0.081 4.081 15 Cl -0.185 7.185 16 C -0.244 4.244 17 C -0.106 4.106 18 C -0.192 4.192 19 Cl -0.086 7.086 20 H 0.101 0.899 21 H 0.128 0.872 22 H 0.084 0.916 23 H 0.106 0.894 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.146 0.854 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.994 -3.456 -6.150 8.643 hybrid contribution 0.734 0.788 0.331 1.127 sum -4.260 -2.668 -5.819 7.689 Atomic orbital electron populations 1.69843 1.08610 1.30888 1.34685 1.26595 0.95429 1.03998 0.91284 0.85320 0.79523 0.76890 0.79087 1.18674 1.18434 1.19207 1.19834 0.98224 0.92214 1.40816 0.90583 1.17786 0.92258 0.91543 0.89938 1.20895 0.99084 0.97494 1.01370 1.19575 0.96898 0.92921 0.97489 1.20428 0.94654 1.02872 0.92222 1.21738 0.97153 1.03067 0.93190 1.24503 0.98341 1.06470 0.78810 1.98708 1.93000 1.99104 1.27704 1.20577 1.00293 0.97111 1.06388 1.20746 0.95861 0.95735 0.98214 1.21085 0.96258 0.95769 1.06103 1.98185 1.43806 1.98664 1.67911 0.89908 0.87235 0.91595 0.89413 0.90946 0.92670 0.87877 0.86725 0.85358 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.53 10.96 21.83 0.24 -40.29 15 2 C 0.04 2.10 5.14 85.25 0.44 2.54 15 3 Si 0.97 37.74 29.60 68.60 2.03 39.78 15 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 15 5 H -0.26 -9.56 7.11 99.48 0.71 -8.86 15 6 H -0.27 -10.03 7.11 99.48 0.71 -9.32 15 7 C -0.48 -25.47 8.53 23.44 0.20 -25.27 15 8 H 0.08 4.03 7.12 -2.91 -0.02 4.01 15 9 C 0.09 4.58 5.57 -21.27 -0.12 4.46 15 10 C -0.17 -8.18 8.27 22.49 0.19 -8.00 15 11 C -0.07 -2.77 5.09 -20.15 -0.10 -2.87 15 12 C -0.06 -1.92 5.33 29.85 0.16 -1.76 15 13 C -0.11 -3.00 5.32 30.59 0.16 -2.84 15 14 C -0.02 -0.38 6.66 71.98 0.48 0.10 15 15 Cl -0.21 -4.99 29.15 -2.72 -0.08 -5.07 15 16 C -0.22 -8.76 9.69 22.45 0.22 -8.54 15 17 C -0.09 -3.68 9.82 22.26 0.22 -3.46 15 18 C -0.16 -7.93 6.38 22.82 0.15 -7.79 15 19 Cl -0.11 -5.03 27.60 -2.72 -0.08 -5.11 15 20 H 0.29 12.96 8.30 -92.71 -0.77 12.19 15 21 H 0.11 5.53 6.18 -2.91 -0.02 5.52 15 22 H 0.07 2.00 8.08 -2.38 -0.02 1.98 15 23 H 0.09 2.18 8.08 -2.38 -0.02 2.16 15 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.05 1.69 8.14 -2.38 -0.02 1.67 15 26 H 0.10 1.86 8.14 -2.39 -0.02 1.84 15 27 H 0.11 1.79 8.14 -2.39 -0.02 1.77 15 28 H 0.13 4.11 8.06 -2.91 -0.02 4.09 15 29 H 0.12 4.44 8.06 -2.91 -0.02 4.42 15 Total: -1.00 -55.58 280.87 5.25 -50.33 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.15 Total: 13.80 kcal Atomic # 6 Polarization: -55.43 SS G_CDS: 1.99 Total: -53.44 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.24 Total: -40.29 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.78 kcal Atomic # 17 Polarization: -10.02 SS G_CDS: -0.15 Total: -10.17 kcal Total: -55.58 5.25 -50.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396082264.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.997 kcal (2) G-P(sol) polarization free energy of solvation -55.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds