Wall clock time and date at job start Mon Mar 30 2020 06:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99562 * 2 1 4 4 H 1.48499 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46787 * 299.99154 * 3 2 1 6 6 H 1.48497 * 109.47569 * 59.99279 * 3 2 1 7 7 C 1.39941 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99887 * 163.59761 * 7 2 1 9 9 C 1.41395 * 119.99945 * 343.60525 * 7 2 1 10 10 C 1.40715 * 120.24040 * 334.10666 * 9 7 2 11 11 C 1.37709 * 119.73420 * 180.02562 * 10 9 7 12 12 Cl 1.73599 * 119.88721 * 180.02562 * 11 10 9 13 13 C 1.38781 * 120.22437 * 359.97438 * 11 10 9 14 14 C 1.38586 * 120.48363 * 0.02733 * 13 11 10 15 15 C 1.37648 * 120.26611 * 0.22587 * 14 13 11 16 16 C 1.50697 * 120.11740 * 179.72280 * 15 14 13 17 17 C 1.52995 * 109.47430 * 265.00193 * 16 15 14 18 18 C 1.52994 * 109.47599 * 179.97438 * 17 16 15 19 19 Cl 1.80296 * 109.47484 * 179.97438 * 18 17 16 20 20 H 0.96994 * 120.00380 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.12878 * 0.04199 * 10 9 7 22 22 H 1.07998 * 119.75730 * 179.97438 * 13 11 10 23 23 H 1.08006 * 119.86944 * 179.97438 * 14 13 11 24 24 H 1.08997 * 109.46972 * 25.00395 * 16 15 14 25 25 H 1.09001 * 109.46928 * 145.00109 * 16 15 14 26 26 H 1.09006 * 109.47004 * 300.00174 * 17 16 15 27 27 H 1.08997 * 109.47155 * 59.99512 * 17 16 15 28 28 H 1.08997 * 109.46964 * 300.00300 * 18 17 16 29 29 H 1.09001 * 109.46768 * 59.99911 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3964 -1.2127 6 1 1.8833 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0550 -1.2310 -0.2636 9 6 1.3442 -2.4114 0.3467 10 6 0.2134 -2.3795 1.1835 11 6 -0.4247 -3.5540 1.5145 12 17 -1.8206 -3.5192 2.5460 13 6 0.0436 -4.7654 1.0252 14 6 1.1565 -4.8075 0.2004 15 6 1.8128 -3.6461 -0.1389 16 6 3.0263 -3.6964 -1.0310 17 6 4.2910 -3.7275 -0.1705 18 6 5.5230 -3.7792 -1.0761 19 17 7.0134 -3.8151 -0.0621 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1526 -1.4375 1.5645 22 1 -0.4625 -5.6820 1.2899 23 1 1.5127 -5.7557 -0.1744 24 1 2.9856 -4.5929 -1.6496 25 1 3.0438 -2.8140 -1.6707 26 1 4.3317 -2.8309 0.4482 27 1 4.2735 -4.6098 0.4693 28 1 5.4821 -4.6759 -1.6944 29 1 5.5407 -2.8970 -1.7162 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396092869.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:32 Heat of formation + Delta-G solvation = -31.692747 kcal Electronic energy + Delta-G solvation = -14604.093158 eV Core-core repulsion = 11963.130223 eV Total energy + Delta-G solvation = -2640.962935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.12211 -35.99514 -35.49564 -33.92257 -33.64247 -29.95927 -29.53996 -26.03939 -24.84442 -21.46982 -21.27338 -19.60357 -17.43676 -15.78887 -15.09888 -14.81510 -14.34987 -13.95419 -13.71815 -13.08543 -12.78075 -12.24019 -12.17269 -12.09702 -11.56931 -11.24781 -11.20777 -11.02110 -10.74039 -10.57062 -10.36492 -10.17796 -10.01372 -9.94626 -9.65183 -9.49719 -9.28560 -7.59159 -7.34455 -6.88833 -4.53177 2.44181 2.59895 2.76089 3.01624 3.05683 3.08856 3.31005 3.82991 4.43850 5.11001 5.12509 5.40778 5.54425 5.82965 6.03589 6.10006 6.26121 6.32376 6.43879 6.65529 6.78427 6.94508 6.97233 7.16993 7.27850 7.62361 7.74570 7.82857 8.05038 8.37117 8.71387 8.73009 10.04147 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.007697 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.193165 B = 3636.762061 C = 5250.502749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.453 4.453 8 H 0.086 0.914 9 C 0.125 3.875 10 C -0.155 4.155 11 C -0.005 4.005 12 Cl -0.127 7.127 13 C -0.237 4.237 14 C -0.076 4.076 15 C -0.194 4.194 16 C -0.050 4.050 17 C -0.124 4.124 18 C -0.025 4.025 19 Cl -0.206 7.206 20 H 0.283 0.717 21 H 0.129 0.871 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.277 -3.251 -1.547 6.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.729 3.271 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.482 4.482 8 H 0.104 0.896 9 C 0.122 3.878 10 C -0.174 4.174 11 C -0.031 4.031 12 Cl -0.099 7.099 13 C -0.257 4.257 14 C -0.094 4.094 15 C -0.195 4.195 16 C -0.088 4.088 17 C -0.161 4.161 18 C -0.087 4.087 19 Cl -0.180 7.180 20 H 0.094 0.906 21 H 0.146 0.854 22 H 0.115 0.885 23 H 0.114 0.886 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.063 -3.081 -1.403 6.090 hybrid contribution 0.092 0.758 0.125 0.773 sum 5.154 -2.324 -1.278 5.797 Atomic orbital electron populations 1.69806 1.07618 1.29547 1.34038 1.25957 0.94739 1.01500 0.92160 0.86296 0.81097 0.80948 0.78743 1.18163 1.19892 1.19580 1.19620 0.97816 0.90599 1.40178 0.89624 1.17319 0.90328 0.91873 0.88314 1.21267 0.99139 0.95728 1.01314 1.20733 0.89619 0.95846 0.96920 1.98255 1.44214 1.99048 1.68348 1.20191 1.02139 0.94962 1.08442 1.20319 0.95111 0.96389 0.97620 1.19603 1.00721 0.93438 1.05784 1.20106 0.91245 1.01072 0.96331 1.21941 0.91832 1.03912 0.98455 1.24539 0.84739 1.04453 0.95018 1.98695 1.45060 1.99383 1.74828 0.90593 0.85352 0.88457 0.88551 0.93256 0.91075 0.90124 0.91470 0.89494 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.28 10.97 55.55 0.61 -18.67 15 2 C 0.08 1.77 5.16 -17.34 -0.09 1.68 15 3 Si 0.91 17.64 29.59 -169.99 -5.03 12.61 15 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 5 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 7 C -0.45 -10.82 8.12 -37.74 -0.31 -11.13 15 8 H 0.09 1.93 6.10 -52.49 -0.32 1.61 15 9 C 0.12 3.03 5.56 -106.83 -0.59 2.43 15 10 C -0.15 -3.84 8.46 -38.84 -0.33 -4.17 15 11 C 0.00 -0.11 6.31 -39.57 -0.25 -0.36 15 12 Cl -0.13 -2.60 28.95 -51.86 -1.50 -4.10 15 13 C -0.24 -5.13 9.83 -39.25 -0.39 -5.51 15 14 C -0.08 -1.57 9.66 -39.67 -0.38 -1.95 15 15 C -0.19 -4.17 5.19 -103.91 -0.54 -4.71 15 16 C -0.05 -0.88 4.69 -27.89 -0.13 -1.01 15 17 C -0.12 -1.94 5.21 -26.74 -0.14 -2.08 15 18 C -0.02 -0.32 6.66 37.15 0.25 -0.07 15 19 Cl -0.21 -2.85 29.15 -51.86 -1.51 -4.37 15 20 H 0.28 6.35 8.30 -40.82 -0.34 6.02 15 21 H 0.13 3.35 6.21 -52.49 -0.33 3.03 15 22 H 0.10 1.92 8.06 -52.49 -0.42 1.50 15 23 H 0.10 1.72 8.06 -52.48 -0.42 1.30 15 24 H 0.05 0.76 8.05 -51.93 -0.42 0.35 15 25 H 0.07 1.29 7.04 -51.93 -0.37 0.93 15 26 H 0.08 1.42 7.33 -51.93 -0.38 1.04 15 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 15 LS Contribution 278.39 15.07 4.20 4.20 Total: -1.00 -24.74 278.39 -9.20 -33.94 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -3.06 Total: 3.29 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -2.90 Total: -26.89 kcal Atomic # 7 Polarization: -19.28 SS G_CDS: 0.61 Total: -18.67 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Atomic # 17 Polarization: -5.46 SS G_CDS: -3.01 Total: -8.47 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -24.74 -9.20 -33.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396092869.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.247 kcal (2) G-P(sol) polarization free energy of solvation -24.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds