Wall clock time and date at job start Mon Mar 30 2020 06:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 119.99562 * 2 1 4 4 H 1.48499 * 109.47017 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46787 * 299.99154 * 3 2 1 6 6 H 1.48497 * 109.47569 * 59.99279 * 3 2 1 7 7 C 1.39941 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99887 * 163.59761 * 7 2 1 9 9 C 1.41395 * 119.99945 * 343.60525 * 7 2 1 10 10 C 1.40715 * 120.24040 * 334.10666 * 9 7 2 11 11 C 1.37709 * 119.73420 * 180.02562 * 10 9 7 12 12 Cl 1.73599 * 119.88721 * 180.02562 * 11 10 9 13 13 C 1.38781 * 120.22437 * 359.97438 * 11 10 9 14 14 C 1.38586 * 120.48363 * 0.02733 * 13 11 10 15 15 C 1.37648 * 120.26611 * 0.22587 * 14 13 11 16 16 C 1.50697 * 120.11740 * 179.72280 * 15 14 13 17 17 C 1.52995 * 109.47430 * 265.00193 * 16 15 14 18 18 C 1.52994 * 109.47599 * 179.97438 * 17 16 15 19 19 Cl 1.80296 * 109.47484 * 179.97438 * 18 17 16 20 20 H 0.96994 * 120.00380 * 0.02562 * 1 2 3 21 21 H 1.08001 * 120.12878 * 0.04199 * 10 9 7 22 22 H 1.07998 * 119.75730 * 179.97438 * 13 11 10 23 23 H 1.08006 * 119.86944 * 179.97438 * 14 13 11 24 24 H 1.08997 * 109.46972 * 25.00395 * 16 15 14 25 25 H 1.09001 * 109.46928 * 145.00109 * 16 15 14 26 26 H 1.09006 * 109.47004 * 300.00174 * 17 16 15 27 27 H 1.08997 * 109.47155 * 59.99512 * 17 16 15 28 28 H 1.08997 * 109.46964 * 300.00300 * 18 17 16 29 29 H 1.09001 * 109.46768 * 59.99911 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3964 -1.2127 6 1 1.8833 2.3966 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0550 -1.2310 -0.2636 9 6 1.3442 -2.4114 0.3467 10 6 0.2134 -2.3795 1.1835 11 6 -0.4247 -3.5540 1.5145 12 17 -1.8206 -3.5192 2.5460 13 6 0.0436 -4.7654 1.0252 14 6 1.1565 -4.8075 0.2004 15 6 1.8128 -3.6461 -0.1389 16 6 3.0263 -3.6964 -1.0310 17 6 4.2910 -3.7275 -0.1705 18 6 5.5230 -3.7792 -1.0761 19 17 7.0134 -3.8151 -0.0621 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1526 -1.4375 1.5645 22 1 -0.4625 -5.6820 1.2899 23 1 1.5127 -5.7557 -0.1744 24 1 2.9856 -4.5929 -1.6496 25 1 3.0438 -2.8140 -1.6707 26 1 4.3317 -2.8309 0.4482 27 1 4.2735 -4.6098 0.4693 28 1 5.4821 -4.6759 -1.6944 29 1 5.5407 -2.8970 -1.7162 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396092869.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:31 Heat of formation + Delta-G solvation = -41.248971 kcal Electronic energy + Delta-G solvation = -14604.507547 eV Core-core repulsion = 11963.130223 eV Total energy + Delta-G solvation = -2641.377324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.79746 -37.33433 -36.94237 -35.54829 -35.12612 -31.61838 -31.14192 -27.65962 -26.37426 -23.03969 -22.76942 -21.20514 -19.18986 -17.46168 -16.53499 -16.34154 -15.85633 -15.46992 -14.99761 -14.57052 -14.40940 -13.87897 -13.61975 -13.48911 -13.22630 -12.85781 -12.68509 -12.56330 -12.27301 -12.03902 -11.78469 -11.61031 -11.48468 -11.24606 -11.14468 -11.07099 -11.01112 -9.36433 -9.06103 -8.62259 -6.33727 0.81992 1.01015 1.40934 1.48504 1.49590 1.54260 1.57523 2.20276 2.70441 3.62301 3.97413 4.05670 4.40683 4.48895 4.60699 4.65104 4.79486 4.84260 5.04697 5.09677 5.20916 5.26319 5.46379 5.50328 5.58918 5.88636 5.98384 6.11965 6.30555 6.60263 6.93556 6.97915 8.32790 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.014216 B = 0.007697 C = 0.005332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.193165 B = 3636.762061 C = 5250.502749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.036 3.964 3 Si 0.970 3.030 4 H -0.252 1.252 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.475 4.475 8 H 0.092 0.908 9 C 0.096 3.904 10 C -0.185 4.185 11 C -0.019 4.019 12 Cl -0.112 7.112 13 C -0.239 4.239 14 C -0.079 4.079 15 C -0.195 4.195 16 C -0.046 4.046 17 C -0.114 4.114 18 C -0.018 4.018 19 Cl -0.213 7.213 20 H 0.286 0.714 21 H 0.105 0.895 22 H 0.118 0.882 23 H 0.133 0.867 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.113 0.887 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 -4.291 -2.386 8.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.179 4.179 3 Si 0.792 3.208 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.504 4.504 8 H 0.110 0.890 9 C 0.093 3.907 10 C -0.205 4.205 11 C -0.045 4.045 12 Cl -0.083 7.083 13 C -0.259 4.259 14 C -0.097 4.097 15 C -0.197 4.197 16 C -0.084 4.084 17 C -0.152 4.152 18 C -0.080 4.080 19 Cl -0.187 7.187 20 H 0.097 0.903 21 H 0.123 0.877 22 H 0.136 0.864 23 H 0.150 0.850 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.310 -4.135 -2.241 7.870 hybrid contribution -0.356 0.956 0.411 1.100 sum 5.954 -3.179 -1.830 6.993 Atomic orbital electron populations 1.69881 1.09048 1.30431 1.35477 1.26721 0.95299 1.04454 0.91449 0.85315 0.79955 0.76934 0.78613 1.17535 1.19278 1.19736 1.19855 0.98184 0.91230 1.41095 0.88998 1.17699 0.90729 0.93421 0.88852 1.21194 1.00706 0.95527 1.03093 1.20920 0.90217 0.95982 0.97400 1.98246 1.43238 1.99049 1.67792 1.20554 1.02351 0.95061 1.07893 1.20741 0.94455 0.97638 0.96895 1.20090 1.01633 0.92734 1.05204 1.20106 0.90305 1.01999 0.95942 1.21758 0.92446 1.02661 0.98341 1.24520 0.82930 1.06333 0.94228 1.98700 1.45357 1.99420 1.75258 0.90292 0.87700 0.86400 0.84955 0.90437 0.91966 0.92684 0.91433 0.86833 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.67 10.97 21.83 0.24 -41.43 15 2 C 0.04 1.72 5.16 85.26 0.44 2.16 15 3 Si 0.97 36.50 29.59 68.60 2.03 38.53 15 4 H -0.25 -9.12 7.11 99.48 0.71 -8.42 15 5 H -0.27 -9.74 7.11 99.48 0.71 -9.03 15 6 H -0.27 -10.20 7.11 99.48 0.71 -9.49 15 7 C -0.47 -23.03 8.12 23.46 0.19 -22.84 15 8 H 0.09 4.17 6.10 -2.91 -0.02 4.16 15 9 C 0.10 4.71 5.56 -21.29 -0.12 4.59 15 10 C -0.18 -9.45 8.46 22.75 0.19 -9.25 15 11 C -0.02 -0.87 6.31 22.27 0.14 -0.73 15 12 Cl -0.11 -4.56 28.95 -2.72 -0.08 -4.64 15 13 C -0.24 -9.95 9.83 22.48 0.22 -9.73 15 14 C -0.08 -3.09 9.66 22.21 0.21 -2.88 15 15 C -0.20 -8.18 5.19 -19.40 -0.10 -8.28 15 16 C -0.05 -1.51 4.69 29.85 0.14 -1.37 15 17 C -0.11 -3.36 5.21 30.59 0.16 -3.20 15 18 C -0.02 -0.41 6.66 71.98 0.48 0.07 15 19 Cl -0.21 -5.47 29.15 -2.72 -0.08 -5.55 15 20 H 0.29 13.30 8.30 -92.71 -0.77 12.53 15 21 H 0.11 5.76 6.21 -2.91 -0.02 5.74 15 22 H 0.12 4.36 8.06 -2.91 -0.02 4.33 15 23 H 0.13 4.17 8.06 -2.91 -0.02 4.15 15 24 H 0.08 2.11 8.05 -2.39 -0.02 2.09 15 25 H 0.06 2.17 7.04 -2.39 -0.02 2.15 15 26 H 0.05 1.90 7.33 -2.38 -0.02 1.88 15 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 15 28 H 0.11 2.03 8.14 -2.39 -0.02 2.01 15 29 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 Total: -1.00 -53.59 278.39 5.23 -48.36 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 1.16 Total: 16.17 kcal Atomic # 6 Polarization: -53.40 SS G_CDS: 1.96 Total: -51.45 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.24 Total: -41.43 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 17 Polarization: -10.03 SS G_CDS: -0.16 Total: -10.19 kcal Total: -53.59 5.23 -48.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396092869.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.111 kcal (2) G-P(sol) polarization free energy of solvation -53.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds