Wall clock time and date at job start Mon Mar 30 2020 06:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86795 * 119.99951 * 2 1 4 4 H 1.48502 * 109.47022 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47496 * 299.99888 * 3 2 1 6 6 H 1.48505 * 109.46982 * 60.00016 * 3 2 1 7 7 C 1.39941 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99650 * 197.86733 * 7 2 1 9 9 C 1.41399 * 120.00406 * 17.86673 * 7 2 1 10 10 C 1.40707 * 120.23425 * 24.38425 * 9 7 2 11 11 C 1.37718 * 119.73204 * 179.97438 * 10 9 7 12 12 Cl 1.73600 * 119.88968 * 179.97438 * 11 10 9 13 13 C 1.38771 * 120.21872 * 359.97438 * 11 10 9 14 14 C 1.38593 * 120.49134 * 0.02562 * 13 11 10 15 15 C 1.50700 * 119.86984 * 180.02562 * 14 13 11 16 16 C 1.53009 * 109.46592 * 90.00202 * 15 14 13 17 17 C 1.53000 * 109.46599 * 179.97438 * 16 15 14 18 18 Cl 1.80303 * 109.46801 * 180.02562 * 17 16 15 19 19 C 1.37647 * 120.25666 * 0.27716 * 14 13 11 20 20 H 0.96994 * 120.00023 * 0.02562 * 1 2 3 21 21 H 1.08006 * 120.13496 * 0.02562 * 10 9 7 22 22 H 1.08006 * 119.75646 * 180.02562 * 13 11 10 23 23 H 1.09003 * 109.47293 * 330.00916 * 15 14 13 24 24 H 1.08998 * 109.47085 * 209.99868 * 15 14 13 25 25 H 1.09003 * 109.46719 * 60.00362 * 16 15 14 26 26 H 1.08998 * 109.47132 * 299.99637 * 16 15 14 27 27 H 1.08998 * 109.47137 * 299.99701 * 17 16 15 28 28 H 1.09000 * 109.47510 * 60.00284 * 17 16 15 29 29 H 1.08005 * 120.10722 * 179.70139 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2346 0.2864 9 6 1.3522 -2.4068 -0.3768 10 6 0.2211 -2.3613 -1.2125 11 6 -0.4093 -3.5315 -1.5730 12 17 -1.8055 -3.4801 -2.6034 13 6 0.0678 -4.7515 -1.1151 14 6 1.1810 -4.8070 -0.2915 15 6 1.6875 -6.1396 0.1970 16 6 2.7116 -6.6915 -0.7969 17 6 3.2263 -8.0441 -0.3006 18 17 4.4335 -8.6941 -1.4715 19 6 1.8228 -3.6493 0.0861 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1506 -1.4126 -1.5707 22 1 -0.4322 -5.6647 -1.4028 23 1 0.8534 -6.8359 0.2834 24 1 2.1586 -6.0140 1.1719 25 1 3.5457 -5.9952 -0.8833 26 1 2.2405 -6.8171 -1.7718 27 1 3.6974 -7.9181 0.6742 28 1 2.3923 -8.7406 -0.2138 29 1 2.6873 -3.6951 0.7319 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396095631.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:21 Heat of formation + Delta-G solvation = -32.748908 kcal Electronic energy + Delta-G solvation = -14256.652585 eV Core-core repulsion = 11615.643851 eV Total energy + Delta-G solvation = -2641.008733 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.08436 -36.18911 -35.46650 -34.66489 -33.19866 -29.98646 -29.63164 -25.70488 -25.35621 -21.77697 -20.91074 -20.10273 -17.16930 -15.62876 -15.42385 -14.81970 -14.39850 -14.02861 -13.97506 -13.44009 -12.87896 -12.41058 -12.22475 -11.94427 -11.56367 -11.42649 -11.19664 -11.01983 -10.83598 -10.58396 -10.48663 -10.32680 -10.26666 -10.02277 -9.78162 -9.58140 -9.22307 -7.56064 -7.39370 -6.88592 -4.51795 2.28318 2.59173 2.72872 3.01990 3.06248 3.08730 3.29721 3.84490 4.41733 4.87759 4.88719 5.27849 5.42141 5.53368 5.77212 5.81458 6.11180 6.20381 6.31935 6.48286 6.62164 6.86925 6.96733 7.13395 7.26348 7.63813 7.76120 7.85044 8.03940 8.39903 8.72247 8.74034 10.05179 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.005442 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.498450 B = 5144.308921 C = 6342.138288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.118 3.882 10 C -0.158 4.158 11 C -0.002 4.002 12 Cl -0.126 7.126 13 C -0.233 4.233 14 C -0.052 4.052 15 C -0.068 4.068 16 C -0.123 4.123 17 C -0.027 4.027 18 Cl -0.199 7.199 19 C -0.216 4.216 20 H 0.283 0.717 21 H 0.129 0.871 22 H 0.097 0.903 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 -8.126 -0.026 8.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.115 3.885 10 C -0.178 4.178 11 C -0.028 4.028 12 Cl -0.098 7.098 13 C -0.253 4.253 14 C -0.052 4.052 15 C -0.106 4.106 16 C -0.160 4.160 17 C -0.090 4.090 18 Cl -0.173 7.173 19 C -0.236 4.236 20 H 0.094 0.906 21 H 0.147 0.853 22 H 0.115 0.885 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.653 -8.008 -0.182 8.438 hybrid contribution 0.123 0.791 -0.085 0.805 sum 2.776 -7.217 -0.267 7.737 Atomic orbital electron populations 1.69815 1.07640 1.29564 1.34026 1.25960 0.94759 1.01562 0.92109 0.86244 0.81015 0.80738 0.78705 1.18263 1.19555 1.19884 1.19608 0.98277 0.91006 1.39761 0.89960 1.17466 0.90387 0.92360 0.88283 1.21281 0.99316 0.95889 1.01314 1.20684 0.89545 0.95715 0.96852 1.98256 1.44138 1.99012 1.68347 1.20020 1.01764 0.94783 1.08691 1.19039 0.95244 0.93370 0.97573 1.20418 0.97486 0.94929 0.97788 1.21900 0.99865 0.93936 1.00335 1.24495 0.92966 0.98010 0.93510 1.98707 1.63720 1.88662 1.66229 1.20912 1.03839 0.92102 1.06729 0.90580 0.85338 0.88464 0.91862 0.91582 0.90484 0.90650 0.89106 0.89178 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.71 10.95 55.55 0.61 -19.10 15 2 C 0.08 1.81 5.14 -17.34 -0.09 1.72 15 3 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 15 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 7 C -0.46 -11.56 9.05 -37.74 -0.34 -11.90 15 8 H 0.08 1.99 7.91 -52.48 -0.42 1.57 15 9 C 0.12 2.99 5.57 -106.83 -0.60 2.39 15 10 C -0.16 -3.99 8.47 -38.84 -0.33 -4.32 15 11 C 0.00 -0.04 6.31 -39.57 -0.25 -0.29 15 12 Cl -0.13 -2.57 28.95 -51.86 -1.50 -4.08 15 13 C -0.23 -4.94 9.48 -39.25 -0.37 -5.31 15 14 C -0.05 -1.04 5.12 -104.71 -0.54 -1.58 15 15 C -0.07 -1.03 5.34 -27.88 -0.15 -1.18 15 16 C -0.12 -1.65 5.32 -26.73 -0.14 -1.79 15 17 C -0.03 -0.29 6.66 37.16 0.25 -0.04 15 18 Cl -0.20 -2.44 29.15 -51.86 -1.51 -3.95 15 19 C -0.22 -4.89 9.43 -38.87 -0.37 -5.25 15 20 H 0.28 6.45 8.30 -40.82 -0.34 6.11 15 21 H 0.13 3.41 6.16 -52.48 -0.32 3.08 15 22 H 0.10 1.88 8.06 -52.48 -0.42 1.46 15 23 H 0.06 0.87 8.08 -51.93 -0.42 0.45 15 24 H 0.07 0.93 8.08 -51.93 -0.42 0.51 15 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.09 0.85 8.14 -51.93 -0.42 0.43 15 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 15 29 H 0.10 2.06 8.06 -52.48 -0.42 1.64 15 LS Contribution 283.08 15.07 4.27 4.27 Total: -1.00 -25.60 283.08 -9.34 -34.94 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -3.25 Total: 2.50 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -2.92 Total: -27.55 kcal Atomic # 7 Polarization: -19.71 SS G_CDS: 0.61 Total: -19.10 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 17 Polarization: -5.01 SS G_CDS: -3.01 Total: -8.02 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -25.60 -9.34 -34.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396095631.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.194 kcal (2) G-P(sol) polarization free energy of solvation -25.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds