Wall clock time and date at job start Mon Mar 30 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86803 * 120.00215 * 2 1 4 4 H 1.48498 * 109.46980 * 274.65017 * 3 2 1 5 5 H 1.48492 * 109.46862 * 34.65402 * 3 2 1 6 6 H 1.48502 * 109.46939 * 154.65398 * 3 2 1 7 7 C 1.39943 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00484 * 162.65061 * 7 2 1 9 9 C 1.41338 * 119.99896 * 342.64199 * 7 2 1 10 10 C 1.40719 * 120.25551 * 334.78012 * 9 7 2 11 11 C 1.36571 * 119.88454 * 179.97438 * 10 9 7 12 12 C 1.38683 * 120.41639 * 359.72762 * 11 10 9 13 13 C 1.38564 * 120.52200 * 0.55390 * 12 11 10 14 14 C 1.50698 * 119.94964 * 179.72226 * 13 12 11 15 15 C 1.53000 * 109.46874 * 264.72479 * 14 13 12 16 16 C 1.52997 * 109.46861 * 179.97438 * 15 14 13 17 17 Cl 1.80305 * 109.47208 * 180.02562 * 16 15 14 18 18 C 1.37856 * 120.09829 * 359.44724 * 13 12 11 19 19 Cl 1.73601 * 120.20241 * 180.25134 * 18 13 12 20 20 H 0.96998 * 119.99390 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.05968 * 359.95888 * 10 9 7 22 22 H 1.08000 * 119.79784 * 180.02562 * 11 10 9 23 23 H 1.08003 * 119.74160 * 180.27467 * 12 11 10 24 24 H 1.08996 * 109.46896 * 144.72684 * 14 13 12 25 25 H 1.09004 * 109.46883 * 24.72164 * 14 13 12 26 26 H 1.09009 * 109.47336 * 60.00360 * 15 14 13 27 27 H 1.09001 * 109.47565 * 300.00147 * 15 14 13 28 28 H 1.08998 * 109.47654 * 299.99821 * 16 15 14 29 29 H 1.08997 * 109.47317 * 60.00396 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3916 2.1031 -1.3955 5 1 1.4926 2.6222 0.7961 6 1 3.5857 1.4137 0.5994 7 6 2.0080 -1.2120 -0.0005 8 1 3.0512 -1.2332 -0.2794 9 6 1.3496 -2.4082 0.3641 10 6 0.2225 -2.3690 1.2057 11 6 -0.4083 -3.5295 1.5528 12 6 0.0515 -4.7482 1.0765 13 6 1.1632 -4.8071 0.2515 14 6 1.6554 -6.1389 -0.2537 15 6 2.7684 -6.6520 0.6623 16 6 3.2677 -8.0043 0.1498 17 17 4.5788 -8.6094 1.2295 18 6 1.8162 -3.6489 -0.1124 19 17 3.2054 -3.7191 -1.1512 20 1 -0.4849 0.8401 0.0004 21 1 -0.1430 -1.4229 1.5766 22 1 -1.2735 -3.4978 2.1984 23 1 -0.4583 -5.6589 1.3543 24 1 2.0424 -6.0229 -1.2660 25 1 0.8314 -6.8525 -0.2591 26 1 2.3813 -6.7679 1.6747 27 1 3.5923 -5.9384 0.6678 28 1 2.4436 -8.7178 0.1446 29 1 3.6546 -7.8889 -0.8626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396097034.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:23 Heat of formation + Delta-G solvation = -29.401581 kcal Electronic energy + Delta-G solvation = -14520.091994 eV Core-core repulsion = 11879.228411 eV Total energy + Delta-G solvation = -2640.863582 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.08541 -36.10750 -35.02426 -34.64749 -33.29666 -29.97723 -29.63491 -25.64759 -25.24445 -21.70565 -20.90122 -20.04649 -17.10945 -15.64775 -15.42982 -14.89025 -14.37013 -14.00493 -13.86947 -13.30225 -12.69974 -12.33419 -12.14964 -12.00865 -11.50761 -11.23625 -11.18552 -11.01191 -10.65376 -10.57644 -10.43675 -10.28695 -10.12558 -10.04585 -9.68205 -9.25735 -9.22349 -7.49789 -7.37787 -6.88511 -4.47956 2.34104 2.64171 2.75563 3.02735 3.06530 3.13949 3.68253 3.86444 4.47921 4.94811 4.96234 5.34428 5.45437 5.59896 5.84625 5.85836 6.14782 6.18542 6.40111 6.45716 6.58893 6.88846 7.07146 7.13700 7.33150 7.60730 7.81276 7.93027 8.07376 8.45296 8.70260 8.75225 10.05169 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.005529 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.655525 B = 5062.953015 C = 5602.277614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.447 4.447 8 H 0.088 0.912 9 C 0.119 3.881 10 C -0.155 4.155 11 C -0.101 4.101 12 C -0.232 4.232 13 C -0.049 4.049 14 C -0.073 4.073 15 C -0.121 4.121 16 C -0.025 4.025 17 Cl -0.200 7.200 18 C -0.135 4.135 19 Cl -0.117 7.117 20 H 0.283 0.717 21 H 0.123 0.877 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -7.921 0.183 8.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.476 4.476 8 H 0.106 0.894 9 C 0.116 3.884 10 C -0.175 4.175 11 C -0.119 4.119 12 C -0.251 4.251 13 C -0.050 4.050 14 C -0.110 4.110 15 C -0.159 4.159 16 C -0.088 4.088 17 Cl -0.174 7.174 18 C -0.163 4.163 19 Cl -0.089 7.089 20 H 0.094 0.906 21 H 0.140 0.860 22 H 0.110 0.890 23 H 0.112 0.888 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.550 -7.805 0.153 8.212 hybrid contribution 0.353 0.779 -0.100 0.861 sum 2.902 -7.025 0.052 7.601 Atomic orbital electron populations 1.69823 1.07677 1.29547 1.34138 1.25954 0.94730 1.01547 0.92033 0.86275 0.80861 0.80354 0.79240 1.19395 1.19957 1.18201 1.19679 0.98457 0.90691 1.38738 0.89440 1.17410 0.91227 0.90756 0.89054 1.21024 0.98637 0.97336 1.00477 1.20472 0.98701 0.93221 0.99546 1.20137 1.00775 0.96569 1.07663 1.18980 0.95674 0.92034 0.98278 1.20443 0.96920 0.94753 0.98916 1.21854 0.99591 0.94170 1.00279 1.24477 0.90834 0.98356 0.95117 1.98702 1.57454 1.90030 1.71222 1.20630 0.95463 0.94738 1.05431 1.98191 1.44256 1.98561 1.67894 0.90645 0.85961 0.89005 0.88804 0.91150 0.91942 0.90873 0.90236 0.89266 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.57 10.98 55.55 0.61 -18.96 15 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 15 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 15 4 H -0.27 -5.36 7.11 56.52 0.40 -4.95 15 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 7 C -0.45 -11.47 8.52 -37.77 -0.32 -11.79 15 8 H 0.09 2.21 7.12 -52.49 -0.37 1.84 15 9 C 0.12 3.04 5.57 -106.79 -0.59 2.45 15 10 C -0.16 -3.85 8.64 -39.25 -0.34 -4.19 15 11 C -0.10 -2.24 9.97 -40.02 -0.40 -2.64 15 12 C -0.23 -4.84 9.68 -39.30 -0.38 -5.22 15 13 C -0.05 -1.02 5.13 -104.64 -0.54 -1.55 15 14 C -0.07 -1.18 4.86 -27.88 -0.14 -1.32 15 15 C -0.12 -1.77 5.32 -26.73 -0.14 -1.92 15 16 C -0.03 -0.30 6.66 37.16 0.25 -0.05 15 17 Cl -0.20 -2.60 29.15 -51.86 -1.51 -4.11 15 18 C -0.14 -3.15 6.37 -38.73 -0.25 -3.40 15 19 Cl -0.12 -2.47 25.81 -51.86 -1.34 -3.80 15 20 H 0.28 6.37 8.30 -40.82 -0.34 6.03 15 21 H 0.12 3.11 6.20 -52.49 -0.33 2.79 15 22 H 0.09 1.81 8.06 -52.49 -0.42 1.38 15 23 H 0.09 1.72 8.06 -52.48 -0.42 1.30 15 24 H 0.07 1.14 7.12 -51.93 -0.37 0.77 15 25 H 0.06 0.90 8.05 -51.93 -0.42 0.49 15 26 H 0.07 1.09 8.14 -51.92 -0.42 0.67 15 27 H 0.08 1.30 7.90 -51.93 -0.41 0.89 15 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 LS Contribution 277.94 15.07 4.19 4.19 Total: -1.00 -25.66 277.94 -9.17 -34.83 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -3.15 Total: 2.49 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -2.94 Total: -27.86 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 17 Polarization: -5.06 SS G_CDS: -2.85 Total: -7.91 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -25.66 -9.17 -34.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396097034.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.424 kcal (2) G-P(sol) polarization free energy of solvation -25.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds