Wall clock time and date at job start Mon Mar 30 2020 06:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86803 * 120.00215 * 2 1 4 4 H 1.48498 * 109.46980 * 274.65017 * 3 2 1 5 5 H 1.48492 * 109.46862 * 34.65402 * 3 2 1 6 6 H 1.48502 * 109.46939 * 154.65398 * 3 2 1 7 7 C 1.39943 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00484 * 162.65061 * 7 2 1 9 9 C 1.41338 * 119.99896 * 342.64199 * 7 2 1 10 10 C 1.40719 * 120.25551 * 334.78012 * 9 7 2 11 11 C 1.36571 * 119.88454 * 179.97438 * 10 9 7 12 12 C 1.38683 * 120.41639 * 359.72762 * 11 10 9 13 13 C 1.38564 * 120.52200 * 0.55390 * 12 11 10 14 14 C 1.50698 * 119.94964 * 179.72226 * 13 12 11 15 15 C 1.53000 * 109.46874 * 264.72479 * 14 13 12 16 16 C 1.52997 * 109.46861 * 179.97438 * 15 14 13 17 17 Cl 1.80305 * 109.47208 * 180.02562 * 16 15 14 18 18 C 1.37856 * 120.09829 * 359.44724 * 13 12 11 19 19 Cl 1.73601 * 120.20241 * 180.25134 * 18 13 12 20 20 H 0.96998 * 119.99390 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.05968 * 359.95888 * 10 9 7 22 22 H 1.08000 * 119.79784 * 180.02562 * 11 10 9 23 23 H 1.08003 * 119.74160 * 180.27467 * 12 11 10 24 24 H 1.08996 * 109.46896 * 144.72684 * 14 13 12 25 25 H 1.09004 * 109.46883 * 24.72164 * 14 13 12 26 26 H 1.09009 * 109.47336 * 60.00360 * 15 14 13 27 27 H 1.09001 * 109.47565 * 300.00147 * 15 14 13 28 28 H 1.08998 * 109.47654 * 299.99821 * 16 15 14 29 29 H 1.08997 * 109.47317 * 60.00396 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3916 2.1031 -1.3955 5 1 1.4926 2.6222 0.7961 6 1 3.5857 1.4137 0.5994 7 6 2.0080 -1.2120 -0.0005 8 1 3.0512 -1.2332 -0.2794 9 6 1.3496 -2.4082 0.3641 10 6 0.2225 -2.3690 1.2057 11 6 -0.4083 -3.5295 1.5528 12 6 0.0515 -4.7482 1.0765 13 6 1.1632 -4.8071 0.2515 14 6 1.6554 -6.1389 -0.2537 15 6 2.7684 -6.6520 0.6623 16 6 3.2677 -8.0043 0.1498 17 17 4.5788 -8.6094 1.2295 18 6 1.8162 -3.6489 -0.1124 19 17 3.2054 -3.7191 -1.1512 20 1 -0.4849 0.8401 0.0004 21 1 -0.1430 -1.4229 1.5766 22 1 -1.2735 -3.4978 2.1984 23 1 -0.4583 -5.6589 1.3543 24 1 2.0424 -6.0229 -1.2660 25 1 0.8314 -6.8525 -0.2591 26 1 2.3813 -6.7679 1.6747 27 1 3.5923 -5.9384 0.6678 28 1 2.4436 -8.7178 0.1446 29 1 3.6546 -7.8889 -0.8626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396097034.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:23 Heat of formation + Delta-G solvation = -39.969016 kcal Electronic energy + Delta-G solvation = -14520.550232 eV Core-core repulsion = 11879.228411 eV Total energy + Delta-G solvation = -2641.321821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.77160 -37.17999 -36.74000 -36.13962 -34.83913 -31.66714 -31.22372 -27.29950 -26.76375 -22.98476 -22.66104 -21.63631 -18.88949 -17.39204 -16.83656 -16.41003 -15.78736 -15.51421 -15.11270 -14.73538 -14.37637 -13.77191 -13.62044 -13.53666 -13.09156 -12.83730 -12.69502 -12.48523 -12.29122 -12.07946 -11.81217 -11.72773 -11.49747 -11.30342 -11.18948 -11.02554 -10.91050 -9.29783 -9.10887 -8.67198 -6.36238 0.89174 0.95505 1.37632 1.43248 1.48548 1.53806 1.93283 2.19541 2.69750 3.61197 3.81615 3.97335 4.34670 4.37842 4.47734 4.64044 4.67288 4.79022 4.91513 5.05388 5.08590 5.28987 5.37033 5.41049 5.59313 5.88462 5.99833 6.14502 6.28749 6.61253 6.86095 6.92310 8.28685 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.005529 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.655525 B = 5062.953015 C = 5602.277614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.039 3.961 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.482 4.482 8 H 0.079 0.921 9 C 0.088 3.912 10 C -0.184 4.184 11 C -0.104 4.104 12 C -0.227 4.227 13 C -0.050 4.050 14 C -0.068 4.068 15 C -0.114 4.114 16 C -0.018 4.018 17 Cl -0.211 7.211 18 C -0.154 4.154 19 Cl -0.105 7.105 20 H 0.289 0.711 21 H 0.105 0.895 22 H 0.115 0.885 23 H 0.128 0.872 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -9.382 0.042 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.177 4.177 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.511 4.511 8 H 0.098 0.902 9 C 0.085 3.915 10 C -0.204 4.204 11 C -0.122 4.122 12 C -0.247 4.247 13 C -0.051 4.051 14 C -0.106 4.106 15 C -0.152 4.152 16 C -0.080 4.080 17 Cl -0.184 7.184 18 C -0.181 4.181 19 Cl -0.076 7.076 20 H 0.100 0.900 21 H 0.123 0.877 22 H 0.133 0.867 23 H 0.146 0.854 24 H 0.089 0.911 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.133 0.867 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.486 -9.282 0.012 9.609 hybrid contribution 0.334 1.094 -0.053 1.145 sum 2.820 -8.188 -0.042 8.660 Atomic orbital electron populations 1.69863 1.08850 1.30679 1.34984 1.26695 0.95444 1.04330 0.91259 0.85291 0.79336 0.76380 0.79409 1.18832 1.18808 1.18425 1.19818 0.98373 0.91995 1.40917 0.90249 1.17766 0.92064 0.91884 0.89804 1.20997 0.99714 0.97732 1.01945 1.20793 0.99026 0.93013 0.99394 1.20585 1.00414 0.97265 1.06409 1.19499 0.94985 0.93417 0.97209 1.20468 0.98316 0.92854 0.98919 1.21713 0.98265 0.95283 0.99933 1.24482 0.91306 0.97191 0.95040 1.98708 1.58063 1.89978 1.71696 1.20918 0.96264 0.95070 1.05866 1.98178 1.43502 1.98528 1.67413 0.89981 0.87716 0.86703 0.85371 0.91078 0.89142 0.91131 0.92485 0.86660 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.78 10.98 21.83 0.24 -41.54 15 2 C 0.04 1.91 5.14 85.25 0.44 2.35 15 3 Si 0.97 38.02 29.59 68.60 2.03 40.05 15 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 15 5 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 7 C -0.48 -25.53 8.52 23.45 0.20 -25.33 15 8 H 0.08 4.16 7.12 -2.91 -0.02 4.14 15 9 C 0.09 4.60 5.57 -21.27 -0.12 4.49 15 10 C -0.18 -9.34 8.64 22.49 0.19 -9.14 15 11 C -0.10 -4.53 9.97 21.99 0.22 -4.31 15 12 C -0.23 -8.97 9.68 22.45 0.22 -8.75 15 13 C -0.05 -2.01 5.13 -19.88 -0.10 -2.11 15 14 C -0.07 -2.02 4.86 29.85 0.14 -1.87 15 15 C -0.11 -3.06 5.32 30.59 0.16 -2.89 15 16 C -0.02 -0.36 6.66 71.98 0.48 0.12 15 17 Cl -0.21 -5.01 29.15 -2.72 -0.08 -5.08 15 18 C -0.15 -7.17 6.37 22.82 0.15 -7.02 15 19 Cl -0.10 -4.38 25.81 -2.72 -0.07 -4.45 15 20 H 0.29 13.33 8.30 -92.71 -0.77 12.56 15 21 H 0.10 5.56 6.20 -2.91 -0.02 5.55 15 22 H 0.11 4.35 8.06 -2.91 -0.02 4.32 15 23 H 0.13 4.15 8.06 -2.91 -0.02 4.13 15 24 H 0.07 2.12 7.12 -2.39 -0.02 2.10 15 25 H 0.09 2.21 8.05 -2.38 -0.02 2.19 15 26 H 0.07 1.93 8.14 -2.38 -0.02 1.91 15 27 H 0.06 1.79 7.90 -2.39 -0.02 1.77 15 28 H 0.12 1.79 8.14 -2.39 -0.02 1.77 15 29 H 0.10 1.87 8.14 -2.39 -0.02 1.85 15 Total: -1.00 -56.12 277.94 5.25 -50.86 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.15 Total: 14.64 kcal Atomic # 6 Polarization: -56.46 SS G_CDS: 1.98 Total: -54.48 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.24 Total: -41.54 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Atomic # 17 Polarization: -9.38 SS G_CDS: -0.15 Total: -9.53 kcal Total: -56.12 5.25 -50.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396097034.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.894 kcal (2) G-P(sol) polarization free energy of solvation -56.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds