Wall clock time and date at job start Mon Mar 30 2020 06:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86795 * 119.99839 * 2 1 4 4 H 1.48501 * 109.47167 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47368 * 300.00424 * 3 2 1 6 6 H 1.48503 * 109.47240 * 59.99976 * 3 2 1 7 7 C 1.39937 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99968 * 163.47776 * 7 2 1 9 9 C 1.41342 * 119.99737 * 343.47309 * 7 2 1 10 10 C 1.40713 * 120.25755 * 334.23012 * 9 7 2 11 11 C 1.36578 * 119.88007 * 179.74325 * 10 9 7 12 12 C 1.38680 * 120.41715 * 0.48873 * 11 10 9 13 13 C 1.50703 * 119.73634 * 179.75824 * 12 11 10 14 14 C 1.52993 * 109.47203 * 269.72646 * 13 12 11 15 15 C 1.53004 * 109.47162 * 180.02562 * 14 13 12 16 16 Cl 1.80301 * 109.47404 * 180.02562 * 15 14 13 17 17 C 1.38550 * 120.52596 * 359.48790 * 12 11 10 18 18 C 1.37860 * 120.09964 * 0.27301 * 17 12 11 19 19 Cl 1.73600 * 120.20721 * 179.97438 * 18 17 12 20 20 H 0.97001 * 120.00280 * 359.97438 * 1 2 3 21 21 H 1.08000 * 120.06211 * 0.02562 * 10 9 7 22 22 H 1.08000 * 119.78809 * 180.25520 * 11 10 9 23 23 H 1.09001 * 109.46828 * 149.72918 * 13 12 11 24 24 H 1.08999 * 109.47257 * 29.73367 * 13 12 11 25 25 H 1.09001 * 109.47007 * 60.00381 * 14 13 12 26 26 H 1.08991 * 109.47619 * 300.00168 * 14 13 12 27 27 H 1.09001 * 109.46914 * 60.00244 * 15 14 13 28 28 H 1.08999 * 109.47212 * 300.00668 * 15 14 13 29 29 H 1.07997 * 119.95507 * 180.25213 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3965 1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0546 -1.2310 -0.2665 9 6 1.3451 -2.4108 0.3471 10 6 0.2144 -2.3787 1.1841 11 6 -0.4234 -3.5414 1.5109 12 6 0.0421 -4.7564 1.0311 13 6 -0.6702 -6.0305 1.4058 14 6 -0.0591 -6.5983 2.6883 15 6 -0.7819 -7.8922 3.0684 16 17 -0.0622 -8.5609 4.5802 17 6 1.1536 -4.8078 0.2055 18 6 1.8110 -3.6469 -0.1419 19 17 3.2043 -3.7081 -1.1757 20 1 -0.4850 0.8400 0.0004 21 1 -0.1512 -1.4361 1.5637 22 1 -1.2936 -3.5147 2.1500 23 1 -0.5636 -6.7568 0.6000 24 1 -1.7275 -5.8212 1.5687 25 1 -0.1657 -5.8720 3.4941 26 1 0.9981 -6.8076 2.5254 27 1 -0.6749 -8.6183 2.2625 28 1 -1.8392 -7.6833 3.2312 29 1 1.5058 -5.7587 -0.1661 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396102775.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:17 Heat of formation + Delta-G solvation = -31.246892 kcal Electronic energy + Delta-G solvation = -14287.699514 eV Core-core repulsion = 11646.755913 eV Total energy + Delta-G solvation = -2640.943601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.06460 -36.16733 -35.16590 -34.58270 -33.17614 -30.06457 -29.32054 -27.00816 -24.07530 -21.63613 -21.15166 -19.96079 -17.46913 -15.62474 -15.33324 -14.90886 -14.06904 -14.01929 -13.96091 -13.32636 -12.58554 -12.47903 -12.27650 -12.16679 -11.46734 -11.36949 -11.19505 -10.99896 -10.78882 -10.55552 -10.37578 -10.27406 -10.14522 -9.95390 -9.73092 -9.30917 -9.26301 -7.53710 -7.39144 -6.89458 -4.48006 2.30437 2.60244 2.79078 3.02555 3.07682 3.10069 3.67922 3.85704 4.44698 4.90772 4.92715 5.31955 5.43043 5.58079 5.83442 5.91222 6.12273 6.19845 6.30027 6.39770 6.54357 6.92270 7.00473 7.13740 7.34110 7.55079 7.80649 7.90649 8.07574 8.44181 8.68769 8.73318 10.03845 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.028073 B = 0.004791 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.164578 B = 5843.177402 C = 6400.614725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.445 4.445 8 H 0.088 0.912 9 C 0.118 3.882 10 C -0.153 4.153 11 C -0.092 4.092 12 C -0.208 4.208 13 C -0.051 4.051 14 C -0.124 4.124 15 C -0.027 4.027 16 Cl -0.202 7.202 17 C -0.071 4.071 18 C -0.139 4.139 19 Cl -0.121 7.121 20 H 0.282 0.718 21 H 0.124 0.876 22 H 0.091 0.909 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 -7.559 3.346 8.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.473 4.473 8 H 0.106 0.894 9 C 0.114 3.886 10 C -0.172 4.172 11 C -0.111 4.111 12 C -0.210 4.210 13 C -0.088 4.088 14 C -0.162 4.162 15 C -0.090 4.090 16 Cl -0.176 7.176 17 C -0.090 4.090 18 C -0.167 4.167 19 Cl -0.092 7.092 20 H 0.093 0.907 21 H 0.141 0.859 22 H 0.109 0.891 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.988 -7.446 3.348 8.403 hybrid contribution 0.405 0.750 -0.115 0.860 sum -1.583 -6.696 3.233 7.602 Atomic orbital electron populations 1.69820 1.07656 1.29497 1.34203 1.25962 0.94765 1.01582 0.92061 0.86218 0.81175 0.80565 0.78651 1.18149 1.19838 1.19592 1.19739 0.98212 0.90603 1.38777 0.89391 1.17451 0.91300 0.90834 0.88992 1.21010 0.98442 0.97285 1.00500 1.20349 0.98625 0.92626 0.99478 1.18820 1.00690 0.93432 1.08033 1.20155 0.98276 0.95234 0.95173 1.21986 1.00578 0.94352 0.99260 1.24534 0.99589 0.98285 0.86608 1.98705 1.86962 1.88142 1.43748 1.20239 0.95277 0.95380 0.98119 1.20771 0.95287 0.95385 1.05214 1.98203 1.44056 1.98740 1.68232 0.90661 0.85872 0.89057 0.92537 0.92356 0.90821 0.90888 0.89258 0.89247 0.88495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.43 10.96 55.55 0.61 -18.82 15 2 C 0.08 1.82 5.16 -17.34 -0.09 1.73 15 3 Si 0.91 18.20 29.59 -169.99 -5.03 13.17 15 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 6 H -0.27 -5.30 7.11 56.52 0.40 -4.89 15 7 C -0.44 -11.39 8.52 -37.77 -0.32 -11.71 15 8 H 0.09 2.23 7.14 -52.49 -0.37 1.86 15 9 C 0.12 3.00 5.57 -106.79 -0.59 2.41 15 10 C -0.15 -3.73 8.64 -39.25 -0.34 -4.07 15 11 C -0.09 -1.98 9.61 -40.02 -0.38 -2.36 15 12 C -0.21 -4.13 5.15 -104.34 -0.54 -4.67 15 13 C -0.05 -0.76 5.33 -27.88 -0.15 -0.91 15 14 C -0.12 -1.67 5.32 -26.73 -0.14 -1.81 15 15 C -0.03 -0.30 6.66 37.16 0.25 -0.05 15 16 Cl -0.20 -2.48 29.15 -51.86 -1.51 -3.99 15 17 C -0.07 -1.51 9.47 -39.60 -0.37 -1.89 15 18 C -0.14 -3.30 6.38 -38.73 -0.25 -3.54 15 19 Cl -0.12 -2.62 27.62 -51.86 -1.43 -4.05 15 20 H 0.28 6.31 8.30 -40.82 -0.34 5.97 15 21 H 0.12 3.10 6.20 -52.49 -0.33 2.77 15 22 H 0.09 1.74 8.06 -52.49 -0.42 1.32 15 23 H 0.06 0.79 8.08 -51.93 -0.42 0.37 15 24 H 0.06 0.81 8.08 -51.93 -0.42 0.40 15 25 H 0.07 1.06 8.14 -51.93 -0.42 0.63 15 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 15 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 15 29 H 0.10 1.86 8.06 -52.49 -0.42 1.44 15 LS Contribution 280.92 15.07 4.23 4.23 Total: -1.00 -25.48 280.92 -9.27 -34.76 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.21 Total: 1.58 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: -2.93 Total: -26.88 kcal Atomic # 7 Polarization: -19.43 SS G_CDS: 0.61 Total: -18.82 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 17 Polarization: -5.10 SS G_CDS: -2.94 Total: -8.04 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -25.48 -9.27 -34.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396102775.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.511 kcal (2) G-P(sol) polarization free energy of solvation -25.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds