Wall clock time and date at job start Mon Mar 30 2020 06:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86797 * 120.00450 * 2 1 4 4 H 1.48505 * 109.47029 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47352 * 119.99896 * 3 2 1 6 6 H 1.48499 * 109.47228 * 239.99640 * 3 2 1 7 7 C 1.39932 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00036 * 154.66987 * 7 2 1 9 9 C 1.41343 * 120.00354 * 334.66868 * 7 2 1 10 10 C 1.40769 * 120.22960 * 334.36128 * 9 7 2 11 11 C 1.36586 * 119.76032 * 179.67048 * 10 9 7 12 12 C 1.38823 * 120.23396 * 0.62394 * 11 10 9 13 13 Cl 1.73599 * 119.76173 * 179.68911 * 12 11 10 14 14 C 1.38776 * 120.46890 * 359.67415 * 12 11 10 15 15 C 1.36621 * 120.23823 * 359.97438 * 14 12 11 16 16 C 1.50696 * 120.12506 * 180.02562 * 15 14 12 17 17 C 1.52994 * 109.47308 * 265.02164 * 16 15 14 18 18 C 1.53001 * 109.47535 * 179.97438 * 17 16 15 19 19 Cl 1.80300 * 109.47435 * 179.97438 * 18 17 16 20 20 H 0.96997 * 120.00151 * 174.19102 * 1 2 3 21 21 H 1.08003 * 120.11579 * 359.97438 * 10 9 7 22 22 H 1.08002 * 119.88516 * 180.31796 * 11 10 9 23 23 H 1.08002 * 119.88104 * 180.02562 * 14 12 11 24 24 H 1.09008 * 109.46520 * 25.01998 * 16 15 14 25 25 H 1.09000 * 109.47525 * 145.01447 * 16 15 14 26 26 H 1.08999 * 109.47283 * 299.99650 * 17 16 15 27 27 H 1.09007 * 109.47201 * 59.99535 * 17 16 15 28 28 H 1.08999 * 109.47043 * 300.00401 * 18 17 16 29 29 H 1.09007 * 109.46763 * 59.99870 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 1.2775 2.7465 -0.0006 5 1 3.0962 1.6963 1.2125 6 1 3.0963 1.6962 -1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0101 -1.2571 -0.3996 9 6 1.4031 -2.3769 0.5248 10 6 0.3909 -2.2735 1.4976 11 6 -0.1917 -3.4054 1.9927 12 6 0.2201 -4.6548 1.5493 13 17 -0.5232 -6.0856 2.1929 14 6 1.2214 -4.7681 0.5952 15 6 1.8123 -3.6485 0.0817 16 6 2.8990 -3.7745 -0.9547 17 6 4.2657 -3.7363 -0.2680 18 6 5.3690 -3.8649 -1.3202 19 17 6.9796 -3.8192 -0.5110 20 1 -0.4850 -0.8357 -0.0850 21 1 0.0728 -1.3026 1.8476 22 1 -0.9720 -3.3282 2.7353 23 1 1.5341 -5.7449 0.2568 24 1 2.7859 -4.7192 -1.4867 25 1 2.8245 -2.9482 -1.6618 26 1 4.3788 -2.7917 0.2639 27 1 4.3402 -4.5627 0.4390 28 1 5.2557 -4.8097 -1.8518 29 1 5.2946 -3.0388 -2.0275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396105182.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:28 Heat of formation + Delta-G solvation = -46.327553 kcal Electronic energy + Delta-G solvation = -14624.018604 eV Core-core repulsion = 11982.421057 eV Total energy + Delta-G solvation = -2641.597548 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 258.027 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.10391 -37.28581 -37.02326 -35.77533 -35.26446 -31.67083 -31.10103 -27.54977 -26.46575 -23.00459 -22.91735 -21.52909 -19.69144 -17.20736 -16.90660 -16.27236 -15.77664 -15.51764 -15.12592 -14.79992 -14.24144 -14.09076 -13.81829 -13.54053 -13.30334 -12.89193 -12.61879 -12.53583 -12.16776 -12.00270 -11.75357 -11.68571 -11.49522 -11.34925 -11.19441 -11.11202 -10.83087 -9.59305 -9.37819 -9.11060 -6.43340 0.74970 0.86371 1.43729 1.53877 1.63286 1.67001 1.80435 2.32783 2.62195 3.45446 3.88524 3.98798 4.24865 4.28574 4.42348 4.51505 4.70949 4.75052 4.91992 4.97161 5.08706 5.21729 5.35533 5.48072 5.59045 5.75847 5.78523 5.88528 6.20057 6.28082 6.72619 6.91524 8.03224 Molecular weight = 258.03amu Principal moments of inertia in cm(-1) A = 0.011105 B = 0.009121 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.753401 B = 3069.269498 C = 5329.090016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.006 3.994 3 Si 1.108 2.892 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.253 1.253 7 C -0.524 4.524 8 H 0.090 0.910 9 C 0.079 3.921 10 C -0.234 4.234 11 C -0.078 4.078 12 C -0.168 4.168 13 Cl -0.108 7.108 14 C -0.067 4.067 15 C -0.191 4.191 16 C -0.045 4.045 17 C -0.114 4.114 18 C -0.018 4.018 19 Cl -0.211 7.211 20 H 0.286 0.714 21 H 0.093 0.907 22 H 0.109 0.891 23 H 0.123 0.877 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.112 0.888 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.714 -4.375 -2.785 8.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.212 4.212 3 Si 0.925 3.075 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.551 4.551 8 H 0.108 0.892 9 C 0.076 3.924 10 C -0.253 4.253 11 C -0.097 4.097 12 C -0.195 4.195 13 Cl -0.080 7.080 14 C -0.085 4.085 15 C -0.193 4.193 16 C -0.083 4.083 17 C -0.152 4.152 18 C -0.080 4.080 19 Cl -0.185 7.185 20 H 0.098 0.902 21 H 0.112 0.888 22 H 0.127 0.873 23 H 0.141 0.859 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.130 0.870 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.509 -2.865 -2.627 7.582 hybrid contribution -0.385 -1.763 0.386 1.845 sum 6.125 -4.628 -2.242 7.997 Atomic orbital electron populations 1.70569 1.09171 1.33532 1.30190 1.28302 0.95576 1.07445 0.89899 0.83104 0.74881 0.70224 0.79252 1.20194 1.19131 1.17706 1.20821 1.03498 0.94231 1.36540 0.89241 1.17905 0.90932 0.93511 0.90023 1.20837 1.04938 0.96610 1.02942 1.20404 0.98906 0.91346 0.99076 1.20296 1.05392 0.85834 1.08020 1.98225 1.82852 1.40233 1.86675 1.20366 0.94694 0.98246 0.95225 1.19619 1.04034 0.91852 1.03792 1.20098 0.90866 1.01820 0.95476 1.21750 0.92914 1.02595 0.97910 1.24498 0.80766 1.06317 0.96419 1.98701 1.36302 1.99414 1.84048 0.90154 0.88841 0.87262 0.85899 0.90658 0.91806 0.92508 0.91703 0.86974 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.30 12.32 21.82 0.27 -41.03 15 2 C 0.01 0.26 4.94 85.25 0.42 0.68 15 3 Si 1.11 40.15 30.00 68.60 2.06 42.21 15 4 H -0.28 -10.15 7.11 99.48 0.71 -9.44 15 5 H -0.27 -9.32 7.11 99.48 0.71 -8.61 15 6 H -0.25 -8.26 7.11 99.48 0.71 -7.56 15 7 C -0.52 -24.88 8.05 23.44 0.19 -24.69 15 8 H 0.09 4.01 6.14 -2.90 -0.02 3.99 15 9 C 0.08 3.81 5.30 -21.29 -0.11 3.70 15 10 C -0.23 -11.43 7.91 22.50 0.18 -11.26 15 11 C -0.08 -3.50 9.76 22.02 0.21 -3.29 15 12 C -0.17 -7.04 6.34 22.54 0.14 -6.89 15 13 Cl -0.11 -3.87 28.94 -2.72 -0.08 -3.95 15 14 C -0.07 -2.68 9.39 22.02 0.21 -2.47 15 15 C -0.19 -8.03 5.16 -19.63 -0.10 -8.13 15 16 C -0.05 -1.50 4.68 29.84 0.14 -1.36 15 17 C -0.11 -3.40 5.21 30.59 0.16 -3.24 15 18 C -0.02 -0.41 6.66 71.98 0.48 0.07 15 19 Cl -0.21 -5.41 29.15 -2.72 -0.08 -5.49 15 20 H 0.29 15.17 6.69 -92.71 -0.62 14.55 15 21 H 0.09 4.83 6.50 -2.91 -0.02 4.81 15 22 H 0.11 4.51 8.06 -2.91 -0.02 4.49 15 23 H 0.12 4.30 8.06 -2.91 -0.02 4.28 15 24 H 0.07 2.13 8.05 -2.38 -0.02 2.11 15 25 H 0.06 2.23 7.05 -2.39 -0.02 2.22 15 26 H 0.06 1.97 7.30 -2.39 -0.02 1.95 15 27 H 0.06 1.96 8.14 -2.38 -0.02 1.94 15 28 H 0.11 2.07 8.14 -2.39 -0.02 2.05 15 29 H 0.10 2.16 8.14 -2.38 -0.02 2.14 15 Total: -1.00 -51.63 277.39 5.39 -46.23 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 1.31 Total: 18.91 kcal Atomic # 6 Polarization: -58.81 SS G_CDS: 1.92 Total: -56.89 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.27 Total: -41.03 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.06 Total: 42.21 kcal Atomic # 17 Polarization: -9.28 SS G_CDS: -0.16 Total: -9.44 kcal Total: -51.63 5.39 -46.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396105182.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.093 kcal (2) G-P(sol) polarization free energy of solvation -51.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds