Wall clock time and date at job start Mon Mar 30 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 S 1.81397 * 109.47166 * 2 1 4 4 C 1.81401 * 102.99785 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47149 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47482 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47859 * 179.97438 * 6 5 4 8 8 C 1.46848 * 110.99510 * 294.21467 * 7 6 5 9 9 C 1.53048 * 109.52064 * 174.15537 * 8 7 6 10 10 C 1.53118 * 109.27745 * 59.17773 * 9 8 7 11 11 C 1.50696 * 109.57248 * 182.40887 * 10 9 8 12 12 H 1.08009 * 119.99700 * 119.71572 * 11 10 9 13 13 C 1.37871 * 120.00268 * 299.71086 * 11 10 9 14 14 N 1.31514 * 119.99941 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00175 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47017 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46915 * 120.00349 * 15 13 11 18 18 H 1.48495 * 109.47192 * 240.00312 * 15 13 11 19 19 C 1.53120 * 109.16026 * 302.34502 * 10 9 8 20 20 C 1.46844 * 111.00526 * 170.00090 * 7 6 5 21 21 H 1.08991 * 109.47137 * 300.00517 * 1 2 3 22 22 H 1.09000 * 109.46480 * 60.00238 * 1 2 3 23 23 H 1.08995 * 109.47181 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46969 * 239.99762 * 2 1 3 25 25 H 1.09000 * 109.46704 * 120.00266 * 2 1 3 26 26 H 1.09002 * 109.47085 * 299.99903 * 4 3 2 27 27 H 1.09001 * 109.47417 * 60.00029 * 4 3 2 28 28 H 1.09002 * 109.47153 * 299.99990 * 5 4 3 29 29 H 1.08998 * 109.47533 * 59.99620 * 5 4 3 30 30 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 31 31 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 32 32 H 1.08996 * 109.46339 * 294.16557 * 8 7 6 33 33 H 1.08994 * 109.46869 * 54.14232 * 8 7 6 34 34 H 1.08998 * 109.49998 * 299.23732 * 9 8 7 35 35 H 1.08994 * 109.50211 * 179.11499 * 9 8 7 36 36 H 1.09002 * 109.52451 * 62.24612 * 10 9 8 37 37 H 0.96999 * 119.99675 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.50479 * 297.71302 * 19 10 9 39 39 H 1.08998 * 109.50625 * 177.59615 * 19 10 9 40 40 H 1.09003 * 109.46077 * 305.85847 * 20 7 6 41 41 H 1.08995 * 109.45945 * 65.83669 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 0.0008 5 6 4.6066 2.8815 0.0002 6 6 6.1267 2.7091 0.0015 7 7 6.7695 4.0300 0.0004 8 6 6.4950 4.7476 -1.2511 9 6 7.0545 6.1692 -1.1587 10 6 8.5633 6.1033 -0.9066 11 6 9.1113 7.4989 -0.7556 12 1 9.5975 7.7916 0.1633 13 6 8.9922 8.4020 -1.7905 14 7 8.3999 8.0457 -2.9093 15 14 9.6722 10.1318 -1.6036 16 1 10.2869 10.2795 -0.2599 17 1 10.7003 10.3750 -2.6472 18 1 8.5705 11.1159 -1.7553 19 6 8.8243 5.3094 0.3764 20 6 8.2136 3.9128 0.2396 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.2399 0.9543 0.8910 27 1 4.2407 0.9540 -0.8890 28 1 4.3038 3.4325 -0.8902 29 1 4.3032 3.4336 0.8897 30 1 6.4292 2.1582 0.8922 31 1 6.4305 2.1569 -0.8878 32 1 6.9690 4.2241 -2.0814 33 1 5.4186 4.7910 -1.4163 34 1 6.5710 6.6978 -0.3372 35 1 6.8644 6.6964 -2.0935 36 1 9.0517 5.6089 -1.7464 37 1 8.3164 8.6810 -3.6376 38 1 8.3687 5.8246 1.2222 39 1 9.8986 5.2225 0.5385 40 1 8.3853 3.3498 1.1570 41 1 8.6794 3.3934 -0.5978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397204293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:52 Heat of formation + Delta-G solvation = -41.518992 kcal Electronic energy + Delta-G solvation = -17098.366544 eV Core-core repulsion = 14523.529999 eV Total energy + Delta-G solvation = -2574.836545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91931 -36.45553 -34.51806 -33.64216 -32.44786 -31.46911 -28.29649 -26.24595 -24.52293 -23.88596 -23.24962 -21.70473 -20.35694 -18.45036 -17.37984 -16.76349 -16.59680 -16.31089 -15.78733 -15.63429 -15.27280 -14.90095 -14.71011 -14.31296 -14.25717 -13.69035 -13.43514 -13.16174 -13.03512 -12.90498 -12.64307 -12.57232 -12.35183 -12.30196 -11.99797 -11.86955 -11.75534 -11.69661 -11.27553 -10.87094 -10.79393 -10.60929 -10.37168 -9.17793 -8.68782 -8.07824 -6.21143 0.70267 1.39785 1.41641 1.53126 1.69291 2.43922 3.02795 3.19058 3.87717 3.98624 4.04375 4.08741 4.17227 4.28199 4.34219 4.37116 4.50865 4.53244 4.58659 4.61921 4.71648 4.78346 4.86850 4.89766 4.91864 4.97119 5.04297 5.16866 5.22117 5.23310 5.29031 5.36067 5.57375 5.63525 6.00743 6.03411 6.29948 6.36048 6.41370 6.90860 7.46651 8.96966 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.042058 B = 0.003384 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.580087 B = 8272.934082 C = 8709.383214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 S -0.324 6.324 4 C -0.064 4.064 5 C -0.093 4.093 6 C 0.064 3.936 7 N -0.545 5.545 8 C 0.068 3.932 9 C -0.096 4.096 10 C 0.043 3.957 11 C -0.532 4.532 12 H 0.051 0.949 13 C 0.010 3.990 14 N -0.918 5.918 15 Si 0.954 3.046 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.101 4.101 20 C 0.067 3.933 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.034 0.966 32 H 0.013 0.987 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.059 0.941 36 H -0.012 1.012 37 H 0.260 0.740 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 -17.621 5.992 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.226 4.226 3 S -0.098 6.098 4 C -0.213 4.213 5 C -0.132 4.132 6 C -0.065 4.065 7 N -0.269 5.269 8 C -0.059 4.059 9 C -0.134 4.134 10 C 0.024 3.976 11 C -0.570 4.570 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.558 5.558 15 Si 0.780 3.220 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.139 4.139 20 C -0.061 4.061 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.006 0.994 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -12.012 -16.368 6.210 21.232 hybrid contribution 1.473 -0.229 -1.029 1.811 sum -10.539 -16.597 5.181 20.332 Atomic orbital electron populations 1.21532 0.91585 1.03576 1.02692 1.23357 1.00644 0.92880 1.05719 1.87313 1.07942 1.16338 1.98254 1.23219 0.91406 1.00776 1.05891 1.21213 0.94016 0.95122 1.02883 1.22087 0.93443 0.89497 1.01515 1.61910 1.11543 1.18523 1.34973 1.22055 0.99593 0.95082 0.89214 1.21422 0.97413 0.93985 1.00584 1.18675 0.92686 0.93798 0.92428 1.21622 1.36906 0.98234 1.00202 0.93081 1.25764 0.95626 1.02369 0.95058 1.70028 1.44365 1.36194 1.05241 0.85570 0.78114 0.80169 0.78194 1.19173 1.20622 1.20663 1.21554 0.98772 0.94899 0.98630 1.22049 0.86807 0.96993 1.00228 0.92174 0.92385 0.89006 0.89344 0.89019 0.88463 0.89372 0.92457 0.91249 0.88974 0.94799 0.96855 0.91080 0.95239 0.92224 0.99428 0.93125 0.93073 0.92718 0.89089 0.96014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.92 71.98 0.71 -0.91 16 2 C -0.08 -1.09 6.66 71.98 0.48 -0.61 16 3 S -0.32 -6.99 21.74 -56.49 -1.23 -8.22 16 4 C -0.06 -1.22 5.94 71.98 0.43 -0.80 16 5 C -0.09 -2.28 5.15 30.59 0.16 -2.13 16 6 C 0.06 1.64 4.96 86.30 0.43 2.06 16 7 N -0.54 -18.73 4.66 -896.37 -4.17 -22.90 16 8 C 0.07 2.73 5.29 86.33 0.46 3.19 16 9 C -0.10 -4.74 5.12 30.65 0.16 -4.58 16 10 C 0.04 2.21 2.16 -11.46 -0.02 2.19 16 11 C -0.53 -30.21 8.56 25.60 0.22 -29.99 16 12 H 0.05 2.86 7.75 -2.91 -0.02 2.84 16 13 C 0.01 0.57 5.31 84.65 0.45 1.02 16 14 N -0.92 -54.31 11.37 21.45 0.24 -54.07 16 15 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 C -0.10 -4.26 5.32 30.65 0.16 -4.09 16 20 C 0.07 2.30 5.46 86.33 0.47 2.77 16 21 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 26 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.60 6.43 -2.39 -0.02 1.58 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.97 7.99 -2.39 -0.02 1.95 16 31 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 2.64 6.21 -2.39 -0.01 2.63 16 34 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 3.32 6.17 -2.39 -0.01 3.31 16 36 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 39 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.09 2.56 8.02 -2.39 -0.02 2.54 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -63.04 331.46 1.92 -61.12 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.95 Total: 9.25 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 4.10 Total: -31.88 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -3.93 Total: -76.97 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: -6.99 SS G_CDS: -1.23 Total: -8.22 kcal Total: -63.04 1.92 -61.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397204293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.597 kcal (2) G-P(sol) polarization free energy of solvation -63.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds