Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81396 * 109.47115 * 2 1 4 4 C 1.81399 * 103.00179 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47360 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47085 * 180.02562 * 5 4 3 7 7 N 1.46908 * 109.47197 * 180.02562 * 6 5 4 8 8 C 1.46836 * 111.00079 * 66.04340 * 7 6 5 9 9 C 1.53035 * 109.52604 * 174.16153 * 8 7 6 10 10 C 1.53124 * 109.27474 * 59.18042 * 9 8 7 11 11 C 1.53115 * 109.16171 * 302.34524 * 10 9 8 12 12 H 1.09003 * 109.50677 * 297.71860 * 11 10 9 13 13 C 1.50697 * 109.50400 * 177.63632 * 11 10 9 14 14 H 1.08000 * 120.00110 * 275.19828 * 13 11 10 15 15 C 1.37878 * 120.00334 * 95.20396 * 13 11 10 16 16 N 1.31508 * 120.00100 * 185.51395 * 15 13 11 17 17 Si 1.86803 * 119.99632 * 5.51660 * 15 13 11 18 18 H 1.48494 * 109.47490 * 84.78072 * 17 15 13 19 19 H 1.48501 * 109.47054 * 204.78766 * 17 15 13 20 20 H 1.48505 * 109.47219 * 324.78140 * 17 15 13 21 21 C 1.46846 * 110.99639 * 301.83557 * 7 6 5 22 22 H 1.08999 * 109.46883 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46612 * 60.00157 * 1 2 3 24 24 H 1.08993 * 109.47097 * 300.00596 * 1 2 3 25 25 H 1.09004 * 109.46963 * 119.99506 * 2 1 3 26 26 H 1.08993 * 109.47373 * 239.99878 * 2 1 3 27 27 H 1.09001 * 109.47162 * 299.99983 * 4 3 2 28 28 H 1.08998 * 109.46947 * 59.99951 * 4 3 2 29 29 H 1.09001 * 109.46834 * 300.00018 * 5 4 3 30 30 H 1.08998 * 109.47266 * 59.99981 * 5 4 3 31 31 H 1.09001 * 109.47294 * 299.99730 * 6 5 4 32 32 H 1.09007 * 109.47349 * 59.99778 * 6 5 4 33 33 H 1.09007 * 109.46667 * 294.18115 * 8 7 6 34 34 H 1.09000 * 109.46339 * 54.15623 * 8 7 6 35 35 H 1.08997 * 109.50477 * 179.11636 * 9 8 7 36 36 H 1.09001 * 109.50201 * 299.20345 * 9 8 7 37 37 H 1.09001 * 109.52269 * 62.25151 * 10 9 8 38 38 H 1.08999 * 109.52225 * 182.38275 * 10 9 8 39 39 H 0.97000 * 119.99539 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46275 * 305.85762 * 21 7 6 41 41 H 1.08997 * 109.46433 * 65.82117 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.6065 2.8817 0.0015 6 6 6.1267 2.7092 0.0015 7 7 6.7694 4.0302 0.0028 8 6 6.4989 4.7458 1.2562 9 6 7.2991 6.0500 1.2836 10 6 6.8989 6.9138 0.0843 11 6 7.1452 6.1273 -1.2061 12 1 8.2079 5.9031 -1.2985 13 6 6.6996 6.9484 -2.3886 14 1 5.6646 6.9342 -2.6967 15 6 7.6133 7.7177 -3.0774 16 7 7.2073 8.5169 -4.0395 17 14 9.4279 7.6246 -2.6438 18 1 10.0512 6.4854 -3.3641 19 1 10.0976 8.8885 -3.0426 20 1 9.5775 7.4259 -1.1797 21 6 6.3494 4.8208 -1.1612 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 4.2399 0.9545 0.8910 28 1 4.2406 0.9542 -0.8890 29 1 4.3038 3.4334 -0.8885 30 1 4.3030 3.4329 0.8915 31 1 6.4297 2.1573 0.8913 32 1 6.4299 2.1581 -0.8887 33 1 5.4346 4.9713 1.3234 34 1 6.7920 4.1223 2.1009 35 1 7.0861 6.5883 2.2070 36 1 8.3643 5.8245 1.2311 37 1 5.8424 7.1718 0.1576 38 1 7.4968 7.8252 0.0761 39 1 7.8501 9.0584 -4.5238 40 1 6.5338 4.2517 -2.0724 41 1 5.2858 5.0459 -1.0828 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397621216.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = -25.455821 kcal Electronic energy + Delta-G solvation = -17384.095609 eV Core-core repulsion = 14809.955615 eV Total energy + Delta-G solvation = -2574.139994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.75151 -34.90319 -33.04054 -32.69083 -31.24624 -30.24582 -26.16304 -24.99821 -24.06388 -22.73100 -21.51335 -20.68156 -18.49784 -16.84758 -16.37543 -15.60365 -15.45679 -14.89234 -14.65396 -14.27757 -14.08121 -13.86836 -13.30012 -12.91334 -12.74807 -12.49661 -12.41549 -12.10123 -11.95506 -11.65284 -11.52831 -11.22943 -11.16415 -10.96984 -10.72675 -10.44469 -10.10349 -10.06820 -9.78181 -9.48870 -9.26636 -8.90476 -8.46348 -7.80547 -7.74419 -6.04095 -4.03168 1.50382 2.47332 3.34476 3.41957 3.46537 4.39369 4.47403 4.63067 4.69147 4.79211 4.88841 5.09886 5.25415 5.32449 5.33996 5.40263 5.47210 5.49849 5.53719 5.66275 5.78537 5.79337 5.87583 5.96046 6.12252 6.21643 6.27903 6.38713 6.46192 6.55806 6.73283 6.86596 6.95404 7.34243 7.50224 7.61648 7.65063 7.90603 8.57078 9.01157 9.59926 11.09221 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.029818 B = 0.004202 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.790202 B = 6662.513936 C = 7137.430703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 S -0.269 6.269 4 C -0.074 4.074 5 C -0.145 4.145 6 C 0.063 3.937 7 N -0.539 5.539 8 C 0.060 3.940 9 C -0.121 4.121 10 C -0.112 4.112 11 C 0.020 3.980 12 H 0.038 0.962 13 C -0.512 4.512 14 H 0.071 0.929 15 C 0.072 3.928 16 N -0.902 5.902 17 Si 0.879 3.121 18 H -0.276 1.276 19 H -0.292 1.292 20 H -0.263 1.263 21 C 0.069 3.931 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.030 0.970 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.263 0.737 40 H 0.066 0.934 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 -16.125 10.607 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.239 4.239 3 S -0.043 6.043 4 C -0.223 4.223 5 C -0.185 4.185 6 C -0.068 4.068 7 N -0.261 5.261 8 C -0.068 4.068 9 C -0.159 4.159 10 C -0.151 4.151 11 C 0.001 3.999 12 H 0.056 0.944 13 C -0.550 4.550 14 H 0.089 0.911 15 C -0.130 4.130 16 N -0.540 5.540 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.219 1.219 20 H -0.188 1.188 21 C -0.058 4.058 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.948 -15.130 10.427 19.645 hybrid contribution 0.751 -0.978 0.157 1.243 sum -6.197 -16.107 10.585 20.246 Atomic orbital electron populations 1.21509 0.92333 1.02339 1.03293 1.23277 1.00199 0.95849 1.04617 1.87147 1.06765 1.12329 1.98094 1.23325 0.92426 1.02013 1.04580 1.22106 0.97627 0.94758 1.04044 1.22183 0.89724 0.92726 1.02148 1.62309 1.57368 1.02961 1.03508 1.22020 0.97782 0.95390 0.91638 1.21688 1.00113 0.95282 0.98793 1.21866 1.00211 0.98191 0.94800 1.19157 0.96193 0.90959 0.93630 0.94359 1.20971 0.97106 1.25514 1.11435 0.91124 1.25052 0.98756 0.94564 0.94626 1.69917 1.34689 1.26028 1.23355 0.86829 0.85758 0.77199 0.79574 1.20211 1.21858 1.18767 1.22302 0.97537 0.95341 0.90637 0.91285 0.91606 0.91720 0.90377 0.90249 0.90373 0.90096 0.90125 0.91023 0.91418 0.90810 0.95177 0.92152 0.92966 0.92068 0.93236 0.92998 0.92718 0.91531 0.95291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.92 37.16 0.37 -0.65 16 2 C -0.09 -0.78 6.66 37.16 0.25 -0.54 16 3 S -0.27 -3.24 21.74 -107.50 -2.34 -5.57 16 4 C -0.07 -0.82 5.94 37.16 0.22 -0.60 16 5 C -0.15 -1.91 4.52 -26.73 -0.12 -2.03 16 6 C 0.06 0.85 5.36 -3.82 -0.02 0.83 16 7 N -0.54 -9.26 4.86 -234.67 -1.14 -10.40 16 8 C 0.06 0.96 5.05 -3.84 -0.02 0.94 16 9 C -0.12 -2.12 6.09 -26.65 -0.16 -2.28 16 10 C -0.11 -2.40 5.27 -26.61 -0.14 -2.54 16 11 C 0.02 0.47 1.94 -91.69 -0.18 0.29 16 12 H 0.04 0.94 5.26 -51.93 -0.27 0.67 16 13 C -0.51 -14.35 8.86 -34.44 -0.31 -14.65 16 14 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 15 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 17 Si 0.88 21.88 27.01 -169.99 -4.59 17.29 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.26 -6.31 6.80 56.52 0.38 -5.92 16 21 C 0.07 1.40 4.10 -3.83 -0.02 1.38 16 22 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 29 H 0.08 1.24 6.51 -51.93 -0.34 0.90 16 30 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 31 H 0.07 0.80 8.06 -51.93 -0.42 0.39 16 32 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.03 0.49 6.75 -51.93 -0.35 0.14 16 34 H 0.06 0.84 8.06 -51.93 -0.42 0.42 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 41 H 0.03 0.60 6.61 -51.93 -0.34 0.26 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -29.98 327.88 -10.13 -40.11 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.56 Total: -1.56 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -0.22 Total: -17.88 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.37 Total: -37.33 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.59 Total: 17.29 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.34 Total: -5.57 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.98 -10.13 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397621216.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.657 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds