Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81396 * 109.47115 * 2 1 4 4 C 1.81399 * 103.00179 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47360 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47085 * 180.02562 * 5 4 3 7 7 N 1.46908 * 109.47197 * 180.02562 * 6 5 4 8 8 C 1.46836 * 111.00079 * 66.04340 * 7 6 5 9 9 C 1.53035 * 109.52604 * 174.16153 * 8 7 6 10 10 C 1.53124 * 109.27474 * 59.18042 * 9 8 7 11 11 C 1.53115 * 109.16171 * 302.34524 * 10 9 8 12 12 H 1.09003 * 109.50677 * 297.71860 * 11 10 9 13 13 C 1.50697 * 109.50400 * 177.63632 * 11 10 9 14 14 H 1.08000 * 120.00110 * 275.19828 * 13 11 10 15 15 C 1.37878 * 120.00334 * 95.20396 * 13 11 10 16 16 N 1.31508 * 120.00100 * 185.51395 * 15 13 11 17 17 Si 1.86803 * 119.99632 * 5.51660 * 15 13 11 18 18 H 1.48494 * 109.47490 * 84.78072 * 17 15 13 19 19 H 1.48501 * 109.47054 * 204.78766 * 17 15 13 20 20 H 1.48505 * 109.47219 * 324.78140 * 17 15 13 21 21 C 1.46846 * 110.99639 * 301.83557 * 7 6 5 22 22 H 1.08999 * 109.46883 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46612 * 60.00157 * 1 2 3 24 24 H 1.08993 * 109.47097 * 300.00596 * 1 2 3 25 25 H 1.09004 * 109.46963 * 119.99506 * 2 1 3 26 26 H 1.08993 * 109.47373 * 239.99878 * 2 1 3 27 27 H 1.09001 * 109.47162 * 299.99983 * 4 3 2 28 28 H 1.08998 * 109.46947 * 59.99951 * 4 3 2 29 29 H 1.09001 * 109.46834 * 300.00018 * 5 4 3 30 30 H 1.08998 * 109.47266 * 59.99981 * 5 4 3 31 31 H 1.09001 * 109.47294 * 299.99730 * 6 5 4 32 32 H 1.09007 * 109.47349 * 59.99778 * 6 5 4 33 33 H 1.09007 * 109.46667 * 294.18115 * 8 7 6 34 34 H 1.09000 * 109.46339 * 54.15623 * 8 7 6 35 35 H 1.08997 * 109.50477 * 179.11636 * 9 8 7 36 36 H 1.09001 * 109.50201 * 299.20345 * 9 8 7 37 37 H 1.09001 * 109.52269 * 62.25151 * 10 9 8 38 38 H 1.08999 * 109.52225 * 182.38275 * 10 9 8 39 39 H 0.97000 * 119.99539 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46275 * 305.85762 * 21 7 6 41 41 H 1.08997 * 109.46433 * 65.82117 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 6 4.6065 2.8817 0.0015 6 6 6.1267 2.7092 0.0015 7 7 6.7694 4.0302 0.0028 8 6 6.4989 4.7458 1.2562 9 6 7.2991 6.0500 1.2836 10 6 6.8989 6.9138 0.0843 11 6 7.1452 6.1273 -1.2061 12 1 8.2079 5.9031 -1.2985 13 6 6.6996 6.9484 -2.3886 14 1 5.6646 6.9342 -2.6967 15 6 7.6133 7.7177 -3.0774 16 7 7.2073 8.5169 -4.0395 17 14 9.4279 7.6246 -2.6438 18 1 10.0512 6.4854 -3.3641 19 1 10.0976 8.8885 -3.0426 20 1 9.5775 7.4259 -1.1797 21 6 6.3494 4.8208 -1.1612 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 4.2399 0.9545 0.8910 28 1 4.2406 0.9542 -0.8890 29 1 4.3038 3.4334 -0.8885 30 1 4.3030 3.4329 0.8915 31 1 6.4297 2.1573 0.8913 32 1 6.4299 2.1581 -0.8887 33 1 5.4346 4.9713 1.3234 34 1 6.7920 4.1223 2.1009 35 1 7.0861 6.5883 2.2070 36 1 8.3643 5.8245 1.2311 37 1 5.8424 7.1718 0.1576 38 1 7.4968 7.8252 0.0761 39 1 7.8501 9.0584 -4.5238 40 1 6.5338 4.2517 -2.0724 41 1 5.2858 5.0459 -1.0828 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397621216.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = -43.420850 kcal Electronic energy + Delta-G solvation = -17384.874631 eV Core-core repulsion = 14809.955615 eV Total energy + Delta-G solvation = -2574.919016 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18278 -36.35958 -34.58006 -33.66885 -32.65506 -31.95259 -27.40260 -26.90787 -24.98151 -23.79646 -23.02886 -22.11462 -20.10650 -18.94325 -17.40687 -16.84605 -16.53719 -16.05536 -15.80942 -15.50618 -15.45179 -15.24366 -14.77787 -14.59231 -14.26861 -13.69431 -13.62833 -13.20299 -13.09203 -12.96643 -12.81576 -12.67647 -12.40844 -12.27568 -12.07894 -11.89168 -11.80453 -11.46261 -11.25918 -11.04567 -10.89946 -10.81764 -10.61994 -9.11509 -8.73171 -8.28752 -6.32275 0.69200 1.36994 1.37173 1.49848 1.67459 2.36689 3.02631 3.14719 3.84388 3.86871 4.01904 4.06282 4.15976 4.16173 4.25014 4.35361 4.39349 4.50422 4.55705 4.56485 4.67664 4.76701 4.82544 4.84226 4.88591 4.89145 4.99355 5.04985 5.09387 5.20545 5.23385 5.26340 5.29101 5.57516 5.66206 5.76618 6.16167 6.31334 6.39700 6.76060 7.34048 8.88504 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.029818 B = 0.004202 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.790202 B = 6662.513936 C = 7137.430703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 S -0.338 6.338 4 C -0.059 4.059 5 C -0.136 4.136 6 C 0.065 3.935 7 N -0.544 5.544 8 C 0.060 3.940 9 C -0.114 4.114 10 C -0.112 4.112 11 C 0.018 3.982 12 H 0.035 0.965 13 C -0.517 4.517 14 H 0.026 0.974 15 C 0.012 3.988 16 N -0.952 5.952 17 Si 0.946 3.054 18 H -0.267 1.267 19 H -0.289 1.289 20 H -0.245 1.245 21 C 0.083 3.917 22 H 0.093 0.907 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.027 0.973 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.265 0.735 40 H 0.055 0.945 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.666 -18.694 13.051 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.223 4.223 3 S -0.113 6.113 4 C -0.207 4.207 5 C -0.176 4.176 6 C -0.065 4.065 7 N -0.267 5.267 8 C -0.068 4.068 9 C -0.152 4.152 10 C -0.150 4.150 11 C -0.002 4.002 12 H 0.053 0.947 13 C -0.555 4.555 14 H 0.044 0.956 15 C -0.185 4.185 16 N -0.592 5.592 17 Si 0.770 3.230 18 H -0.192 1.192 19 H -0.216 1.216 20 H -0.169 1.169 21 C -0.045 4.045 22 H 0.111 0.889 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -5.700 -17.723 12.893 22.646 hybrid contribution 0.214 -0.211 -0.622 0.690 sum -5.486 -17.934 12.272 22.412 Atomic orbital electron populations 1.21537 0.91661 1.03608 1.02600 1.23340 1.00586 0.92619 1.05764 1.87423 1.08803 1.16770 1.98268 1.23215 0.90813 1.00655 1.06035 1.21941 0.97703 0.95779 1.02167 1.22277 0.89476 0.90865 1.03875 1.62244 1.57938 1.03875 1.02644 1.22100 0.97460 0.95230 0.92013 1.21643 1.00343 0.95486 0.97736 1.21742 0.99369 0.98170 0.95713 1.19123 0.96121 0.92126 0.92793 0.94691 1.21267 0.95169 1.26026 1.13042 0.95596 1.25945 1.03863 0.94145 0.94537 1.70069 1.36471 1.27540 1.25126 0.85753 0.79488 0.77440 0.80332 1.19211 1.21563 1.16857 1.21910 0.96098 0.94319 0.92153 0.88861 0.92597 0.92182 0.88810 0.89376 0.88089 0.89295 0.93316 0.91662 0.88305 0.90411 0.95488 0.88605 0.90192 0.91862 0.94404 0.94369 0.92581 0.92637 0.96699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.92 71.98 0.71 -1.09 16 2 C -0.08 -1.13 6.66 71.98 0.48 -0.65 16 3 S -0.34 -7.88 21.74 -56.49 -1.23 -9.11 16 4 C -0.06 -1.16 5.94 71.98 0.43 -0.73 16 5 C -0.14 -3.40 4.52 30.59 0.14 -3.26 16 6 C 0.06 1.57 5.36 86.30 0.46 2.04 16 7 N -0.54 -17.49 4.86 -896.36 -4.35 -21.84 16 8 C 0.06 1.72 5.05 86.33 0.44 2.15 16 9 C -0.11 -3.67 6.09 30.65 0.19 -3.48 16 10 C -0.11 -4.72 5.27 30.67 0.16 -4.55 16 11 C 0.02 0.84 1.94 -11.49 -0.02 0.81 16 12 H 0.03 1.68 5.26 -2.39 -0.01 1.67 16 13 C -0.52 -30.18 8.86 25.60 0.23 -29.95 16 14 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 15 C 0.01 0.70 5.47 84.66 0.46 1.17 16 16 N -0.95 -60.71 13.96 21.45 0.30 -60.41 16 17 Si 0.95 45.42 27.01 68.60 1.85 47.27 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 20 H -0.25 -10.95 6.80 99.48 0.68 -10.28 16 21 C 0.08 3.40 4.10 86.33 0.35 3.76 16 22 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.53 6.51 -2.39 -0.02 1.51 16 30 H 0.06 1.72 6.68 -2.39 -0.02 1.70 16 31 H 0.10 1.87 8.06 -2.39 -0.02 1.85 16 32 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.03 0.81 6.75 -2.38 -0.02 0.79 16 34 H 0.10 2.17 8.06 -2.39 -0.02 2.15 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 41 H 0.01 0.64 6.61 -2.39 -0.02 0.63 16 Total: -1.00 -67.83 327.88 1.53 -66.30 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.93 Total: 11.59 kcal Atomic # 6 Polarization: -37.83 SS G_CDS: 4.03 Total: -33.81 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -4.06 Total: -82.26 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.85 Total: 47.27 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.23 Total: -9.11 kcal Total: -67.83 1.53 -66.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397621216.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.884 kcal (2) G-P(sol) polarization free energy of solvation -67.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds