Wall clock time and date at job start Mon Mar 30 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81395 * 109.47315 * 2 1 4 4 C 1.81398 * 103.00316 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47108 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47262 * 179.97438 * 5 4 3 7 7 N 1.46892 * 109.47390 * 179.97438 * 6 5 4 8 8 C 1.46842 * 111.00192 * 293.95474 * 7 6 5 9 9 C 1.53039 * 109.52666 * 185.84212 * 8 7 6 10 10 C 1.53123 * 109.27546 * 300.81951 * 9 8 7 11 11 C 1.53120 * 109.21163 * 57.62218 * 10 9 8 12 12 H 1.09000 * 109.50719 * 62.32149 * 11 10 9 13 13 C 1.50705 * 109.50009 * 182.43636 * 11 10 9 14 14 H 1.08003 * 119.99487 * 120.00018 * 13 11 10 15 15 C 1.37877 * 119.99919 * 299.99707 * 13 11 10 16 16 N 1.31522 * 119.99678 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 120.00083 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47180 * 89.99841 * 17 15 13 19 19 H 1.48499 * 109.46825 * 209.99605 * 17 15 13 20 20 H 1.48498 * 109.47143 * 329.99570 * 17 15 13 21 21 C 1.46848 * 110.99938 * 58.16403 * 7 6 5 22 22 H 1.08994 * 109.47204 * 299.99944 * 1 2 3 23 23 H 1.08997 * 109.46984 * 60.00180 * 1 2 3 24 24 H 1.09001 * 109.47073 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46727 * 239.99928 * 2 1 3 26 26 H 1.09003 * 109.47336 * 120.00074 * 2 1 3 27 27 H 1.08992 * 109.47013 * 59.99690 * 4 3 2 28 28 H 1.09004 * 109.46810 * 300.00162 * 4 3 2 29 29 H 1.09001 * 109.47256 * 60.00211 * 5 4 3 30 30 H 1.08991 * 109.47606 * 299.99650 * 5 4 3 31 31 H 1.08997 * 109.47211 * 59.99509 * 6 5 4 32 32 H 1.09004 * 109.46865 * 300.00315 * 6 5 4 33 33 H 1.08997 * 109.46434 * 65.82550 * 8 7 6 34 34 H 1.09006 * 109.45199 * 305.85056 * 8 7 6 35 35 H 1.08999 * 109.50420 * 180.88146 * 9 8 7 36 36 H 1.09002 * 109.53427 * 60.77649 * 9 8 7 37 37 H 1.09002 * 109.52319 * 177.56011 * 10 9 8 38 38 H 1.08995 * 109.52318 * 297.68693 * 10 9 8 39 39 H 0.96996 * 119.99509 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.46555 * 294.17605 * 21 7 6 41 41 H 1.08998 * 109.46337 * 54.15813 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 -0.0008 5 6 4.6064 2.8816 -0.0015 6 6 6.1267 2.7092 -0.0015 7 7 6.7693 4.0301 -0.0028 8 6 6.4988 4.7457 -1.2563 9 6 7.2991 6.0499 -1.2836 10 6 6.8989 6.9138 -0.0844 11 6 7.1440 6.1280 1.2068 12 1 8.2066 5.9039 1.3003 13 6 6.6964 6.9495 2.3883 14 1 5.9239 6.5759 3.0441 15 6 7.2731 8.1779 2.6319 16 7 6.8828 8.8946 3.6633 17 14 8.6087 8.8243 1.4972 18 1 7.9888 9.6106 0.4006 19 1 9.5346 9.6933 2.2672 20 1 9.3646 7.6829 0.9218 21 6 6.3493 4.8208 1.1612 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.2398 0.9544 -0.8909 28 1 4.2406 0.9541 0.8890 29 1 4.3037 3.4333 0.8885 30 1 4.3030 3.4328 -0.8914 31 1 6.4297 2.1572 -0.8912 32 1 6.4298 2.1581 0.8887 33 1 5.4346 4.9712 -1.3234 34 1 6.7919 4.1220 -2.1009 35 1 7.0861 6.5882 -2.2072 36 1 8.3644 5.8250 -1.2308 37 1 7.4975 7.8247 -0.0757 38 1 5.8427 7.1727 -0.1583 39 1 7.2882 9.7590 3.8345 40 1 5.2857 5.0459 1.0828 41 1 6.5339 4.2519 2.0724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397621217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:56 Heat of formation + Delta-G solvation = -17.644672 kcal Electronic energy + Delta-G solvation = -17439.533420 eV Core-core repulsion = 14865.732142 eV Total energy + Delta-G solvation = -2573.801277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.80838 -35.01214 -33.04448 -32.70861 -31.26850 -30.27291 -26.25776 -24.92684 -24.10717 -22.81716 -21.49531 -20.81772 -18.53476 -16.74523 -16.35778 -15.63447 -15.55825 -14.90009 -14.75929 -14.38229 -14.06001 -13.90982 -13.40105 -13.00682 -12.77331 -12.56661 -12.40731 -12.10470 -11.98605 -11.67792 -11.59296 -11.21933 -11.13837 -11.05960 -10.68963 -10.28996 -10.07262 -10.03893 -9.90257 -9.64474 -9.07955 -8.89827 -8.48040 -7.81043 -7.76957 -6.03560 -4.02480 1.49796 2.46778 3.31234 3.42185 3.45815 4.36737 4.45698 4.62680 4.68773 4.78130 4.87431 5.09518 5.27876 5.29940 5.32045 5.39701 5.45396 5.48578 5.49787 5.61521 5.77653 5.78392 5.82017 5.92760 6.10478 6.18361 6.25380 6.33566 6.37610 6.53155 6.64715 6.83651 6.87216 7.23609 7.42778 7.61672 7.68268 7.89583 8.55912 8.99884 9.59392 11.09764 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.004197 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.738590 B = 6669.210592 C = 7175.352166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 S -0.269 6.269 4 C -0.074 4.074 5 C -0.146 4.146 6 C 0.063 3.937 7 N -0.538 5.538 8 C 0.060 3.940 9 C -0.120 4.120 10 C -0.123 4.123 11 C 0.020 3.980 12 H 0.034 0.966 13 C -0.513 4.513 14 H 0.072 0.928 15 C 0.070 3.930 16 N -0.903 5.903 17 Si 0.888 3.112 18 H -0.280 1.280 19 H -0.299 1.299 20 H -0.263 1.263 21 C 0.073 3.927 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.263 0.737 40 H 0.031 0.969 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 -16.717 -10.345 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.239 4.239 3 S -0.043 6.043 4 C -0.223 4.223 5 C -0.186 4.186 6 C -0.067 4.067 7 N -0.260 5.260 8 C -0.068 4.068 9 C -0.158 4.158 10 C -0.160 4.160 11 C 0.000 4.000 12 H 0.052 0.948 13 C -0.552 4.552 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.541 5.541 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.227 1.227 20 H -0.188 1.188 21 C -0.054 4.054 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.774 -15.700 -10.205 19.913 hybrid contribution 0.460 -0.484 -0.605 0.901 sum -6.315 -16.184 -10.810 20.461 Atomic orbital electron populations 1.21507 0.92331 1.02343 1.03299 1.23278 1.00203 0.95846 1.04616 1.87159 1.06731 1.12319 1.98093 1.23320 0.92460 1.01983 1.04586 1.22111 0.97608 0.94791 1.04085 1.22177 0.89724 0.92606 1.02209 1.62256 1.57388 1.02968 1.03429 1.22014 0.97821 0.95262 0.91681 1.21659 1.00291 0.95289 0.98559 1.22027 1.00577 0.97900 0.95533 1.19166 0.96551 0.91237 0.93003 0.94763 1.21010 1.22143 1.02257 1.09761 0.90963 1.24988 0.96438 0.96650 0.95064 1.69906 1.42994 1.12796 1.28414 0.86821 0.82195 0.78933 0.80172 1.20749 1.22678 1.18815 1.22128 0.97475 0.94973 0.90774 0.91604 0.91719 0.91283 0.90375 0.90247 0.90363 0.90092 0.90113 0.90990 0.91352 0.90770 0.95053 0.91989 0.92839 0.91876 0.93586 0.92570 0.92725 0.95049 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.92 37.16 0.37 -0.65 16 2 C -0.09 -0.78 6.66 37.16 0.25 -0.53 16 3 S -0.27 -3.21 21.74 -107.50 -2.34 -5.55 16 4 C -0.07 -0.81 5.94 37.15 0.22 -0.58 16 5 C -0.15 -1.90 4.52 -26.73 -0.12 -2.02 16 6 C 0.06 0.84 5.36 -3.83 -0.02 0.82 16 7 N -0.54 -9.14 4.86 -234.67 -1.14 -10.28 16 8 C 0.06 0.96 5.05 -3.84 -0.02 0.94 16 9 C -0.12 -2.14 6.10 -26.65 -0.16 -2.30 16 10 C -0.12 -2.69 4.73 -26.61 -0.13 -2.82 16 11 C 0.02 0.47 1.85 -91.68 -0.17 0.30 16 12 H 0.03 0.86 7.21 -51.93 -0.37 0.48 16 13 C -0.51 -14.51 9.15 -34.44 -0.32 -14.83 16 14 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 15 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 16 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 17 Si 0.89 22.36 24.35 -169.99 -4.14 18.23 16 18 H -0.28 -6.88 6.89 56.52 0.39 -6.50 16 19 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 20 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 21 C 0.07 1.48 4.06 -3.83 -0.02 1.46 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 26 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 29 H 0.08 1.23 6.51 -51.93 -0.34 0.89 16 30 H 0.07 0.99 6.68 -51.93 -0.35 0.64 16 31 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.51 6.75 -51.93 -0.35 0.15 16 34 H 0.06 0.86 8.06 -51.93 -0.42 0.44 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.05 1.07 3.34 -51.93 -0.17 0.89 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.03 0.65 6.61 -51.93 -0.34 0.31 16 41 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -30.29 321.42 -9.64 -39.93 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.43 Total: -1.77 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -0.21 Total: -18.25 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.37 Total: -37.44 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.23 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -2.34 Total: -5.55 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.29 -9.64 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397621217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.289 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds