Wall clock time and date at job start Mon Mar 30 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81395 * 109.47315 * 2 1 4 4 C 1.81398 * 103.00316 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47108 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47262 * 179.97438 * 5 4 3 7 7 N 1.46892 * 109.47390 * 179.97438 * 6 5 4 8 8 C 1.46842 * 111.00192 * 293.95474 * 7 6 5 9 9 C 1.53039 * 109.52666 * 185.84212 * 8 7 6 10 10 C 1.53123 * 109.27546 * 300.81951 * 9 8 7 11 11 C 1.53120 * 109.21163 * 57.62218 * 10 9 8 12 12 H 1.09000 * 109.50719 * 62.32149 * 11 10 9 13 13 C 1.50705 * 109.50009 * 182.43636 * 11 10 9 14 14 H 1.08003 * 119.99487 * 120.00018 * 13 11 10 15 15 C 1.37877 * 119.99919 * 299.99707 * 13 11 10 16 16 N 1.31522 * 119.99678 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 120.00083 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47180 * 89.99841 * 17 15 13 19 19 H 1.48499 * 109.46825 * 209.99605 * 17 15 13 20 20 H 1.48498 * 109.47143 * 329.99570 * 17 15 13 21 21 C 1.46848 * 110.99938 * 58.16403 * 7 6 5 22 22 H 1.08994 * 109.47204 * 299.99944 * 1 2 3 23 23 H 1.08997 * 109.46984 * 60.00180 * 1 2 3 24 24 H 1.09001 * 109.47073 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46727 * 239.99928 * 2 1 3 26 26 H 1.09003 * 109.47336 * 120.00074 * 2 1 3 27 27 H 1.08992 * 109.47013 * 59.99690 * 4 3 2 28 28 H 1.09004 * 109.46810 * 300.00162 * 4 3 2 29 29 H 1.09001 * 109.47256 * 60.00211 * 5 4 3 30 30 H 1.08991 * 109.47606 * 299.99650 * 5 4 3 31 31 H 1.08997 * 109.47211 * 59.99509 * 6 5 4 32 32 H 1.09004 * 109.46865 * 300.00315 * 6 5 4 33 33 H 1.08997 * 109.46434 * 65.82550 * 8 7 6 34 34 H 1.09006 * 109.45199 * 305.85056 * 8 7 6 35 35 H 1.08999 * 109.50420 * 180.88146 * 9 8 7 36 36 H 1.09002 * 109.53427 * 60.77649 * 9 8 7 37 37 H 1.09002 * 109.52319 * 177.56011 * 10 9 8 38 38 H 1.08995 * 109.52318 * 297.68693 * 10 9 8 39 39 H 0.96996 * 119.99509 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.46555 * 294.17605 * 21 7 6 41 41 H 1.08998 * 109.46337 * 54.15813 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 -0.0008 5 6 4.6064 2.8816 -0.0015 6 6 6.1267 2.7092 -0.0015 7 7 6.7693 4.0301 -0.0028 8 6 6.4988 4.7457 -1.2563 9 6 7.2991 6.0499 -1.2836 10 6 6.8989 6.9138 -0.0844 11 6 7.1440 6.1280 1.2068 12 1 8.2066 5.9039 1.3003 13 6 6.6964 6.9495 2.3883 14 1 5.9239 6.5759 3.0441 15 6 7.2731 8.1779 2.6319 16 7 6.8828 8.8946 3.6633 17 14 8.6087 8.8243 1.4972 18 1 7.9888 9.6106 0.4006 19 1 9.5346 9.6933 2.2672 20 1 9.3646 7.6829 0.9218 21 6 6.3493 4.8208 1.1612 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.2398 0.9544 -0.8909 28 1 4.2406 0.9541 0.8890 29 1 4.3037 3.4333 0.8885 30 1 4.3030 3.4328 -0.8914 31 1 6.4297 2.1572 -0.8912 32 1 6.4298 2.1581 0.8887 33 1 5.4346 4.9712 -1.3234 34 1 6.7919 4.1220 -2.1009 35 1 7.0861 6.5882 -2.2072 36 1 8.3644 5.8250 -1.2308 37 1 7.4975 7.8247 -0.0757 38 1 5.8427 7.1727 -0.1583 39 1 7.2882 9.7590 3.8345 40 1 5.2857 5.0459 1.0828 41 1 6.5339 4.2519 2.0724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397621217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:56 Heat of formation + Delta-G solvation = -36.641426 kcal Electronic energy + Delta-G solvation = -17440.357181 eV Core-core repulsion = 14865.732142 eV Total energy + Delta-G solvation = -2574.625038 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.23939 -36.48156 -34.56920 -33.66741 -32.69593 -31.98424 -27.51003 -26.83241 -25.04352 -23.86227 -23.00216 -22.27313 -20.08279 -18.83609 -17.46450 -17.02368 -16.55392 -16.06034 -15.86044 -15.53338 -15.47963 -15.29876 -14.88702 -14.76472 -14.16789 -13.76692 -13.67323 -13.24327 -13.11947 -12.96622 -12.80228 -12.59064 -12.38394 -12.24853 -12.08418 -11.90520 -11.80504 -11.45436 -11.39651 -10.99947 -10.89537 -10.80696 -10.60871 -9.12440 -8.72905 -8.30651 -6.34247 0.69491 1.29837 1.35964 1.47577 1.67785 2.32792 3.05111 3.08078 3.84538 3.86073 4.02091 4.05079 4.09106 4.12208 4.19822 4.34386 4.40103 4.50490 4.52521 4.54979 4.65091 4.74348 4.76997 4.84318 4.85659 4.89244 4.95850 5.01682 5.05654 5.16473 5.20728 5.26249 5.28672 5.45882 5.63911 5.73671 6.15846 6.29390 6.36344 6.73373 7.31468 8.86440 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032112 B = 0.004197 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.738590 B = 6669.210592 C = 7175.352166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 S -0.338 6.338 4 C -0.058 4.058 5 C -0.136 4.136 6 C 0.066 3.934 7 N -0.543 5.543 8 C 0.060 3.940 9 C -0.115 4.115 10 C -0.123 4.123 11 C 0.019 3.981 12 H 0.025 0.975 13 C -0.520 4.520 14 H 0.030 0.970 15 C 0.011 3.989 16 N -0.951 5.951 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.299 1.299 20 H -0.246 1.246 21 C 0.088 3.912 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.044 0.956 39 H 0.265 0.735 40 H 0.018 0.982 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 -18.865 -13.197 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.223 4.223 3 S -0.113 6.113 4 C -0.207 4.207 5 C -0.177 4.177 6 C -0.064 4.064 7 N -0.266 5.266 8 C -0.068 4.068 9 C -0.153 4.153 10 C -0.161 4.161 11 C 0.000 4.000 12 H 0.043 0.957 13 C -0.559 4.559 14 H 0.048 0.952 15 C -0.185 4.185 16 N -0.592 5.592 17 Si 0.781 3.219 18 H -0.194 1.194 19 H -0.227 1.227 20 H -0.170 1.170 21 C -0.040 4.040 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.871 -17.877 -13.075 22.913 hybrid contribution 0.068 0.106 0.355 0.377 sum -5.803 -17.771 -12.720 22.612 Atomic orbital electron populations 1.21536 0.91685 1.03603 1.02594 1.23339 1.00569 0.92625 1.05769 1.87434 1.08835 1.16759 1.98269 1.23212 0.90787 1.00648 1.06055 1.21949 0.97702 0.95799 1.02215 1.22272 0.89447 0.90731 1.03956 1.62202 1.57972 1.03880 1.02537 1.22097 0.97499 0.95050 0.92107 1.21644 1.00602 0.95592 0.97468 1.21927 0.99787 0.97946 0.96428 1.19084 0.96126 0.92573 0.92227 0.95664 1.21354 1.20820 1.02894 1.10794 0.95164 1.25877 0.99051 0.96964 0.96656 1.70059 1.44954 1.13514 1.30673 0.85761 0.79158 0.78761 0.78259 1.19376 1.22718 1.16981 1.21765 0.96014 0.93871 0.92340 0.92600 0.92198 0.88867 0.88811 0.89361 0.88080 0.89266 0.93283 0.91630 0.88233 0.90344 0.95313 0.88370 0.90032 0.91629 0.94742 0.93697 0.92574 0.96417 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.92 71.98 0.71 -1.08 16 2 C -0.08 -1.12 6.66 71.98 0.48 -0.64 16 3 S -0.34 -7.83 21.74 -56.49 -1.23 -9.06 16 4 C -0.06 -1.14 5.94 71.98 0.43 -0.71 16 5 C -0.14 -3.37 4.52 30.59 0.14 -3.23 16 6 C 0.07 1.56 5.36 86.31 0.46 2.03 16 7 N -0.54 -17.28 4.86 -896.36 -4.36 -21.63 16 8 C 0.06 1.72 5.05 86.33 0.44 2.16 16 9 C -0.12 -3.73 6.10 30.65 0.19 -3.54 16 10 C -0.12 -5.26 4.73 30.68 0.15 -5.11 16 11 C 0.02 0.91 1.85 -11.48 -0.02 0.89 16 12 H 0.03 1.25 7.21 -2.39 -0.02 1.23 16 13 C -0.52 -30.62 9.15 25.60 0.23 -30.39 16 14 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 15 C 0.01 0.67 5.45 84.65 0.46 1.13 16 16 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 17 Si 0.95 46.47 24.35 68.60 1.67 48.14 16 18 H -0.27 -12.41 6.89 99.48 0.69 -11.72 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 20 H -0.25 -11.19 6.53 99.48 0.65 -10.54 16 21 C 0.09 3.58 4.06 86.33 0.35 3.93 16 22 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.52 6.51 -2.39 -0.02 1.51 16 30 H 0.07 1.70 6.68 -2.39 -0.02 1.69 16 31 H 0.10 1.84 8.06 -2.39 -0.02 1.82 16 32 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.03 0.85 6.75 -2.39 -0.02 0.84 16 34 H 0.10 2.19 8.06 -2.38 -0.02 2.17 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 37 H 0.03 1.54 3.34 -2.39 -0.01 1.53 16 38 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 40 H 0.02 0.76 6.61 -2.39 -0.02 0.74 16 41 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 Total: -1.00 -68.46 321.42 1.29 -67.17 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.89 Total: 10.74 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 4.01 Total: -34.58 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -4.06 Total: -82.42 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.67 Total: 48.14 kcal Atomic # 16 Polarization: -7.83 SS G_CDS: -1.23 Total: -9.06 kcal Total: -68.46 1.29 -67.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397621217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.525 kcal (2) G-P(sol) polarization free energy of solvation -68.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds