Wall clock time and date at job start Mon Mar 30 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99759 * 2 1 4 4 C 1.52992 * 109.47213 * 72.02534 * 3 2 1 5 5 C 1.53006 * 109.47488 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47367 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47135 * 179.97438 * 6 5 4 8 8 H 1.08010 * 120.00045 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00274 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00161 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99756 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47510 * 89.99394 * 11 9 7 13 13 H 1.48504 * 109.47212 * 209.99858 * 11 9 7 14 14 H 1.48506 * 109.47226 * 329.99605 * 11 9 7 15 15 C 1.46898 * 110.99716 * 236.04966 * 2 1 3 16 16 C 1.52590 * 109.22427 * 193.96029 * 15 2 1 17 17 C 1.53101 * 109.95344 * 169.00203 * 16 15 2 18 18 S 1.81746 * 108.84033 * 63.02982 * 17 16 15 19 19 C 1.81748 * 102.21970 * 306.72831 * 18 17 16 20 20 C 1.52586 * 109.22812 * 72.72548 * 15 2 1 21 21 H 1.08998 * 109.46790 * 187.19984 * 1 2 3 22 22 H 1.08992 * 109.46941 * 307.19742 * 1 2 3 23 23 H 1.09000 * 109.47267 * 67.20051 * 1 2 3 24 24 H 1.09003 * 109.47011 * 192.02712 * 3 2 1 25 25 H 1.08997 * 109.47729 * 312.02235 * 3 2 1 26 26 H 1.09003 * 109.47277 * 300.00014 * 4 3 2 27 27 H 1.09002 * 109.47135 * 60.00005 * 4 3 2 28 28 H 1.09000 * 109.46563 * 300.00360 * 5 4 3 29 29 H 1.08994 * 109.46914 * 59.99727 * 5 4 3 30 30 H 1.08998 * 109.46907 * 300.00065 * 6 5 4 31 31 H 1.09006 * 109.46940 * 59.99838 * 6 5 4 32 32 H 0.97007 * 119.99753 * 180.02562 * 10 9 7 33 33 H 1.08995 * 109.19098 * 313.33886 * 15 2 1 34 34 H 1.09000 * 109.38992 * 289.15028 * 16 15 2 35 35 H 1.08999 * 109.38621 * 48.85268 * 16 15 2 36 36 H 1.09002 * 109.56852 * 182.82998 * 17 16 15 37 37 H 1.08998 * 109.57930 * 303.21628 * 17 16 15 38 38 H 1.09006 * 109.57732 * 293.45934 * 19 18 17 39 39 H 1.09002 * 109.57700 * 173.07696 * 19 18 17 40 40 H 1.08995 * 109.38790 * 311.14379 * 20 15 2 41 41 H 1.09000 * 109.39054 * 70.94635 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7626 2.0071 1.3720 5 6 2.3114 3.4353 1.3723 6 6 2.0780 4.0712 2.7442 7 6 2.6191 5.4776 2.7446 8 1 3.0828 5.8781 1.8551 9 6 2.5214 6.2536 3.8801 10 7 2.9941 7.4808 3.8806 11 14 1.7189 5.5612 5.4182 12 1 2.7488 4.8999 6.2591 13 1 1.0864 6.6639 6.1858 14 1 0.6833 4.5691 5.0325 15 6 1.9954 -0.7659 -1.1376 16 6 3.4809 -1.0364 -0.9170 17 6 3.9842 -2.0560 -1.9422 18 16 3.8129 -1.3477 -3.6072 19 6 2.0633 -0.8570 -3.6384 20 6 1.7761 0.0277 -2.4223 21 1 -0.3633 -1.0196 0.1288 22 1 -0.3633 0.6212 0.8185 23 1 -0.3634 0.3982 -0.9474 24 1 3.0640 1.3505 -0.2141 25 1 1.4834 1.9572 -0.7634 26 1 0.6940 2.0280 1.5862 27 1 2.2747 1.4213 2.1354 28 1 3.3800 3.4139 1.1583 29 1 1.7997 4.0212 0.6088 30 1 1.0093 4.0925 2.9576 31 1 2.5894 3.4852 3.5080 32 1 2.9256 8.0266 4.6796 33 1 1.4642 -1.7151 -1.2070 34 1 4.0384 -0.1064 -1.0278 35 1 3.6316 -1.4294 0.0884 36 1 5.0325 -2.2823 -1.7477 37 1 3.3923 -2.9685 -1.8708 38 1 1.4338 -1.7461 -3.6001 39 1 1.8564 -0.2999 -4.5522 40 1 0.7432 0.3735 -2.4621 41 1 2.4462 0.8872 -2.4356 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403711356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:51 Heat of formation + Delta-G solvation = -22.289535 kcal Electronic energy + Delta-G solvation = -17377.257067 eV Core-core repulsion = 14803.254374 eV Total energy + Delta-G solvation = -2574.002693 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.34773 -35.41519 -33.78759 -32.12420 -31.80168 -29.15536 -27.44188 -25.55169 -23.60705 -23.17149 -21.66232 -20.03041 -19.51892 -17.17066 -16.68086 -16.07169 -15.25427 -15.01150 -14.95311 -14.22997 -14.14476 -13.94072 -13.58602 -13.18093 -12.96453 -12.71178 -12.63345 -12.27532 -11.92271 -11.82255 -11.71126 -11.57352 -11.12368 -10.99435 -10.82127 -10.63379 -10.39235 -9.95779 -9.86281 -9.64341 -9.46831 -9.12813 -8.50630 -8.36689 -7.95600 -6.01284 -3.98787 1.49128 2.24829 3.33081 3.40062 3.44486 3.73558 4.30503 4.48247 4.51132 4.64158 4.69913 4.87211 5.02564 5.04954 5.14590 5.25245 5.30814 5.33047 5.37263 5.42860 5.47979 5.62630 5.69665 5.78183 5.85576 5.90535 5.96023 6.05595 6.14181 6.40722 6.67009 6.79085 6.90995 7.01151 7.09535 7.36699 7.49598 7.84015 8.58098 9.04108 9.61796 11.12368 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.036370 B = 0.003583 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.674727 B = 7813.308397 C = 8066.241928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.051 3.949 4 C -0.115 4.115 5 C -0.102 4.102 6 C -0.013 4.013 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.064 3.936 10 N -0.906 5.906 11 Si 0.881 3.119 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.266 1.266 15 C 0.079 3.921 16 C -0.115 4.115 17 C -0.076 4.076 18 S -0.274 6.274 19 C -0.074 4.074 20 C -0.156 4.156 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.026 0.974 24 H 0.074 0.926 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.013 0.987 31 H 0.011 0.989 32 H 0.262 0.738 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -20.941 -12.956 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.076 4.076 4 C -0.153 4.153 5 C -0.140 4.140 6 C -0.051 4.051 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.136 4.136 10 N -0.545 5.545 11 Si 0.708 3.292 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.190 1.190 15 C -0.030 4.030 16 C -0.154 4.154 17 C -0.225 4.225 18 S -0.048 6.048 19 C -0.223 4.223 20 C -0.197 4.197 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.044 0.956 24 H 0.093 0.907 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.093 0.907 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.262 -20.916 -13.206 24.839 hybrid contribution -1.606 0.082 0.997 1.892 sum -3.868 -20.834 -12.208 24.455 Atomic orbital electron populations 1.22458 0.87595 1.02002 1.00818 1.62281 1.07748 1.14943 1.40640 1.22296 1.00042 0.86987 0.98258 1.21687 1.01013 0.97070 0.95530 1.21425 0.99925 0.92803 0.99822 1.19559 0.96406 0.96315 0.92779 1.21195 1.38371 0.96429 0.99776 0.91143 1.25049 0.95094 0.94716 0.98777 1.69924 1.46902 1.08525 1.29152 0.86761 0.80268 0.78799 0.83351 1.20302 1.21465 1.19028 1.21671 0.95955 0.97048 0.88293 1.21763 0.94938 0.99430 0.99273 1.23448 1.05509 1.00455 0.93082 1.86949 1.15478 1.80242 1.22121 1.23367 0.94436 1.02461 1.02057 1.22463 1.03065 0.99762 0.94368 0.91819 0.90641 0.95557 0.90742 0.94662 0.92677 0.91778 0.92886 0.93126 0.96830 0.97110 0.92811 0.90467 0.90326 0.89509 0.87534 0.89901 0.90026 0.87895 0.90671 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.28 60.07 0.56 0.76 16 2 N -0.53 -6.10 4.63 -235.41 -1.09 -7.19 16 3 C 0.05 0.68 3.66 -3.83 -0.01 0.66 16 4 C -0.12 -1.84 5.27 -26.73 -0.14 -1.98 16 5 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 6 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 10 N -0.91 -28.40 13.96 55.43 0.77 -27.62 16 11 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 15 C 0.08 0.75 1.91 -68.14 -0.13 0.62 16 16 C -0.11 -1.06 4.82 -26.89 -0.13 -1.19 16 17 C -0.08 -0.62 6.45 37.21 0.24 -0.38 16 18 S -0.27 -2.68 22.33 -107.50 -2.40 -5.08 16 19 C -0.07 -0.61 6.45 37.21 0.24 -0.37 16 20 C -0.16 -1.42 4.06 -26.89 -0.11 -1.53 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.07 0.84 6.47 -51.93 -0.34 0.51 16 23 H 0.03 0.25 6.44 -51.93 -0.33 -0.08 16 24 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 25 H 0.04 0.47 7.34 -51.93 -0.38 0.08 16 26 H 0.05 0.87 6.64 -51.93 -0.34 0.53 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 31 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 34 H 0.08 0.83 6.77 -51.93 -0.35 0.47 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.68 6.38 -51.93 -0.33 0.34 16 41 H 0.08 0.87 7.21 -51.93 -0.37 0.49 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -30.74 321.27 -10.07 -40.81 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -7.35 Total: -3.55 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -0.17 Total: -19.64 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.32 Total: -34.82 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.40 Total: -5.08 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.74 -10.07 -40.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403711356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.519 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds