Wall clock time and date at job start Mon Mar 30 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99759 * 2 1 4 4 C 1.52992 * 109.47213 * 72.02534 * 3 2 1 5 5 C 1.53006 * 109.47488 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47367 * 179.97438 * 5 4 3 7 7 C 1.50693 * 109.47135 * 179.97438 * 6 5 4 8 8 H 1.08010 * 120.00045 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00274 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00161 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99756 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47510 * 89.99394 * 11 9 7 13 13 H 1.48504 * 109.47212 * 209.99858 * 11 9 7 14 14 H 1.48506 * 109.47226 * 329.99605 * 11 9 7 15 15 C 1.46898 * 110.99716 * 236.04966 * 2 1 3 16 16 C 1.52590 * 109.22427 * 193.96029 * 15 2 1 17 17 C 1.53101 * 109.95344 * 169.00203 * 16 15 2 18 18 S 1.81746 * 108.84033 * 63.02982 * 17 16 15 19 19 C 1.81748 * 102.21970 * 306.72831 * 18 17 16 20 20 C 1.52586 * 109.22812 * 72.72548 * 15 2 1 21 21 H 1.08998 * 109.46790 * 187.19984 * 1 2 3 22 22 H 1.08992 * 109.46941 * 307.19742 * 1 2 3 23 23 H 1.09000 * 109.47267 * 67.20051 * 1 2 3 24 24 H 1.09003 * 109.47011 * 192.02712 * 3 2 1 25 25 H 1.08997 * 109.47729 * 312.02235 * 3 2 1 26 26 H 1.09003 * 109.47277 * 300.00014 * 4 3 2 27 27 H 1.09002 * 109.47135 * 60.00005 * 4 3 2 28 28 H 1.09000 * 109.46563 * 300.00360 * 5 4 3 29 29 H 1.08994 * 109.46914 * 59.99727 * 5 4 3 30 30 H 1.08998 * 109.46907 * 300.00065 * 6 5 4 31 31 H 1.09006 * 109.46940 * 59.99838 * 6 5 4 32 32 H 0.97007 * 119.99753 * 180.02562 * 10 9 7 33 33 H 1.08995 * 109.19098 * 313.33886 * 15 2 1 34 34 H 1.09000 * 109.38992 * 289.15028 * 16 15 2 35 35 H 1.08999 * 109.38621 * 48.85268 * 16 15 2 36 36 H 1.09002 * 109.56852 * 182.82998 * 17 16 15 37 37 H 1.08998 * 109.57930 * 303.21628 * 17 16 15 38 38 H 1.09006 * 109.57732 * 293.45934 * 19 18 17 39 39 H 1.09002 * 109.57700 * 173.07696 * 19 18 17 40 40 H 1.08995 * 109.38790 * 311.14379 * 20 15 2 41 41 H 1.09000 * 109.39054 * 70.94635 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7626 2.0071 1.3720 5 6 2.3114 3.4353 1.3723 6 6 2.0780 4.0712 2.7442 7 6 2.6191 5.4776 2.7446 8 1 3.0828 5.8781 1.8551 9 6 2.5214 6.2536 3.8801 10 7 2.9941 7.4808 3.8806 11 14 1.7189 5.5612 5.4182 12 1 2.7488 4.8999 6.2591 13 1 1.0864 6.6639 6.1858 14 1 0.6833 4.5691 5.0325 15 6 1.9954 -0.7659 -1.1376 16 6 3.4809 -1.0364 -0.9170 17 6 3.9842 -2.0560 -1.9422 18 16 3.8129 -1.3477 -3.6072 19 6 2.0633 -0.8570 -3.6384 20 6 1.7761 0.0277 -2.4223 21 1 -0.3633 -1.0196 0.1288 22 1 -0.3633 0.6212 0.8185 23 1 -0.3634 0.3982 -0.9474 24 1 3.0640 1.3505 -0.2141 25 1 1.4834 1.9572 -0.7634 26 1 0.6940 2.0280 1.5862 27 1 2.2747 1.4213 2.1354 28 1 3.3800 3.4139 1.1583 29 1 1.7997 4.0212 0.6088 30 1 1.0093 4.0925 2.9576 31 1 2.5894 3.4852 3.5080 32 1 2.9256 8.0266 4.6796 33 1 1.4642 -1.7151 -1.2070 34 1 4.0384 -0.1064 -1.0278 35 1 3.6316 -1.4294 0.0884 36 1 5.0325 -2.2823 -1.7477 37 1 3.3923 -2.9685 -1.8708 38 1 1.4338 -1.7461 -3.6001 39 1 1.8564 -0.2999 -4.5522 40 1 0.7432 0.3735 -2.4621 41 1 2.4462 0.8872 -2.4356 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403711356.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:50 Heat of formation + Delta-G solvation = -40.467192 kcal Electronic energy + Delta-G solvation = -17378.045309 eV Core-core repulsion = 14803.254374 eV Total energy + Delta-G solvation = -2574.790936 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19647 -36.77555 -35.20512 -33.94062 -32.52444 -30.77705 -28.20587 -27.04632 -24.61572 -24.07026 -22.93036 -21.73918 -20.41986 -18.86193 -17.90770 -17.01461 -16.38432 -16.36330 -15.81677 -15.73560 -15.19496 -14.82192 -14.75299 -14.38056 -14.01551 -13.88865 -13.69222 -13.52095 -13.22546 -13.18455 -12.81130 -12.50623 -12.47007 -12.38994 -12.01479 -11.75445 -11.66857 -11.45937 -11.35766 -11.23223 -11.17014 -10.76372 -10.65047 -9.24340 -8.70943 -8.29685 -6.33894 0.81673 1.36000 1.37758 1.50330 1.58346 2.36583 2.87297 3.05690 3.57670 3.80758 3.92542 3.98548 4.06332 4.19956 4.23739 4.33933 4.39425 4.45348 4.52320 4.57629 4.61754 4.69367 4.75018 4.80962 4.85536 4.92820 4.96143 5.09035 5.13006 5.15966 5.21491 5.23054 5.29100 5.58344 5.64873 5.68802 6.09268 6.16298 6.29458 6.74442 7.31002 8.87395 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.036370 B = 0.003583 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.674727 B = 7813.308397 C = 8066.241928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.540 5.540 3 C 0.062 3.938 4 C -0.103 4.103 5 C -0.095 4.095 6 C -0.011 4.011 7 C -0.535 4.535 8 H 0.029 0.971 9 C 0.001 3.999 10 N -0.954 5.954 11 Si 0.954 3.046 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.246 1.246 15 C 0.082 3.918 16 C -0.112 4.112 17 C -0.063 4.063 18 S -0.319 6.319 19 C -0.062 4.062 20 C -0.151 4.151 21 H 0.080 0.920 22 H 0.065 0.935 23 H 0.033 0.967 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.266 0.734 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -23.491 -12.453 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.263 5.263 3 C -0.066 4.066 4 C -0.141 4.141 5 C -0.133 4.133 6 C -0.048 4.048 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.196 4.196 10 N -0.594 5.594 11 Si 0.777 3.223 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.169 1.169 15 C -0.026 4.026 16 C -0.151 4.151 17 C -0.212 4.212 18 S -0.094 6.094 19 C -0.211 4.211 20 C -0.191 4.191 21 H 0.098 0.902 22 H 0.084 0.916 23 H 0.051 0.949 24 H 0.089 0.911 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.131 0.869 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.696 -23.486 -12.723 26.965 hybrid contribution -1.114 0.930 0.767 1.641 sum -4.809 -22.556 -11.956 25.978 Atomic orbital electron populations 1.22502 0.86735 1.02938 1.00811 1.62233 1.08580 1.13598 1.41846 1.22059 1.00046 0.88152 0.96342 1.21506 1.00918 0.94374 0.97291 1.21295 0.99760 0.95124 0.97139 1.19527 0.96161 0.93672 0.95484 1.21574 1.38244 0.99014 0.98513 0.95299 1.26083 0.95742 0.94927 1.02813 1.70082 1.48576 1.10264 1.30523 0.85598 0.79764 0.78529 0.78393 1.19086 1.20893 1.16930 1.21709 0.96024 0.97244 0.87660 1.21713 0.94753 0.99008 0.99618 1.23431 1.06258 1.00357 0.91116 1.87137 1.17594 1.80743 1.23898 1.23357 0.93013 1.02910 1.01820 1.22381 1.02791 0.99249 0.94691 0.90151 0.91598 0.94883 0.91077 0.94795 0.92135 0.91852 0.93598 0.93739 0.96340 0.96460 0.92502 0.89012 0.92013 0.89476 0.86874 0.88324 0.88421 0.87350 0.90208 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.28 127.69 1.18 1.51 16 2 N -0.54 -11.13 4.63 -898.69 -4.16 -15.29 16 3 C 0.06 1.54 3.66 86.30 0.32 1.86 16 4 C -0.10 -3.13 5.27 30.59 0.16 -2.97 16 5 C -0.09 -3.73 5.15 30.60 0.16 -3.58 16 6 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 7 C -0.54 -31.85 9.66 25.60 0.25 -31.60 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 9 C 0.00 0.04 5.47 84.65 0.46 0.50 16 10 N -0.95 -61.12 13.96 21.45 0.30 -60.82 16 11 Si 0.95 45.06 27.47 68.60 1.88 46.94 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.25 -10.75 6.54 99.48 0.65 -10.09 16 15 C 0.08 1.37 1.91 44.64 0.09 1.45 16 16 C -0.11 -1.88 4.82 30.49 0.15 -1.74 16 17 C -0.06 -0.91 6.45 72.02 0.46 -0.44 16 18 S -0.32 -5.87 22.33 -56.49 -1.26 -7.13 16 19 C -0.06 -0.90 6.45 72.02 0.46 -0.43 16 20 C -0.15 -2.47 4.06 30.49 0.12 -2.35 16 21 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.07 1.32 6.47 -2.39 -0.02 1.30 16 23 H 0.03 0.55 6.44 -2.39 -0.02 0.53 16 24 H 0.07 1.83 6.34 -2.39 -0.02 1.81 16 25 H 0.03 0.86 7.34 -2.39 -0.02 0.84 16 26 H 0.06 1.78 6.64 -2.39 -0.02 1.77 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 31 H 0.02 0.80 7.57 -2.38 -0.02 0.78 16 32 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 33 H 0.09 1.32 7.96 -2.39 -0.02 1.30 16 34 H 0.06 1.26 6.77 -2.39 -0.02 1.24 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 36 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.08 1.25 6.38 -2.39 -0.02 1.24 16 41 H 0.06 1.30 7.21 -2.39 -0.02 1.28 16 Total: -1.00 -66.76 321.27 1.61 -65.15 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.91 Total: 9.34 kcal Atomic # 6 Polarization: -42.12 SS G_CDS: 3.94 Total: -38.19 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -3.86 Total: -76.12 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Atomic # 16 Polarization: -5.87 SS G_CDS: -1.26 Total: -7.13 kcal Total: -66.76 1.61 -65.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403711356.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.679 kcal (2) G-P(sol) polarization free energy of solvation -66.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds