Wall clock time and date at job start Mon Mar 30 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47004 * 2 1 4 4 C 1.46498 * 119.99782 * 87.41642 * 3 2 1 5 5 C 1.50699 * 109.47249 * 88.11624 * 4 3 2 6 6 H 1.07998 * 120.00101 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00224 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99558 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00138 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47403 * 270.00057 * 9 7 5 11 11 H 1.48505 * 109.47279 * 30.00159 * 9 7 5 12 12 H 1.48497 * 109.47311 * 149.99909 * 9 7 5 13 13 C 1.34776 * 119.99824 * 267.41209 * 3 2 1 14 14 O 1.21276 * 120.00025 * 4.92576 * 13 3 2 15 15 C 1.50694 * 119.99915 * 184.92211 * 13 3 2 16 16 H 1.09003 * 109.47459 * 326.64364 * 15 13 3 17 17 C 1.53003 * 109.47200 * 206.64541 * 15 13 3 18 18 C 1.53005 * 109.47173 * 179.97438 * 17 15 13 19 19 C 1.53005 * 109.46831 * 59.99981 * 18 17 15 20 20 C 1.53003 * 109.47258 * 299.99967 * 19 18 17 21 21 H 1.09001 * 109.47127 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47097 * 299.99901 * 20 19 18 23 23 C 1.52996 * 109.47016 * 59.99857 * 20 19 18 24 24 H 1.08997 * 109.47257 * 295.85985 * 1 2 3 25 25 H 1.09001 * 109.46746 * 55.85709 * 1 2 3 26 26 H 1.08998 * 109.46575 * 175.85702 * 1 2 3 27 27 H 1.09000 * 109.47475 * 240.00044 * 2 1 3 28 28 H 1.09002 * 109.46872 * 119.99472 * 2 1 3 29 29 H 1.08995 * 109.47604 * 328.11213 * 4 3 2 30 30 H 1.09003 * 109.46963 * 208.11131 * 4 3 2 31 31 H 0.97001 * 119.99671 * 180.02562 * 8 7 5 32 32 H 1.08990 * 109.47071 * 299.99747 * 17 15 13 33 33 H 1.08994 * 109.46904 * 60.00302 * 17 15 13 34 34 H 1.08993 * 109.47053 * 179.97438 * 18 17 15 35 35 H 1.08994 * 109.47361 * 300.00438 * 18 17 15 36 36 H 1.09003 * 109.46983 * 59.99535 * 19 18 17 37 37 H 1.08998 * 109.47271 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47226 * 180.02562 * 23 20 19 39 39 H 1.09003 * 109.47482 * 60.00276 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2086 2.0909 1.2674 5 6 3.5968 1.8236 1.7894 6 1 4.2699 1.1883 1.2329 7 6 4.0076 2.3901 2.9774 8 7 3.1881 3.1642 3.6548 9 14 5.7281 2.0582 3.6248 10 1 5.7064 0.8542 4.4937 11 1 6.6505 1.8287 2.4838 12 1 6.1952 3.2279 4.4113 13 6 2.2927 1.9990 -1.1660 14 8 2.0513 1.4447 -2.2173 15 6 2.8991 3.3785 -1.1634 16 1 2.5258 3.9380 -0.3056 17 6 2.5156 4.1068 -2.4532 18 6 3.1308 5.5077 -2.4502 19 6 4.6542 5.3954 -2.3615 20 6 5.0377 4.6672 -1.0717 21 1 6.1229 4.5869 -1.0088 22 9 4.5581 5.3849 0.0292 23 6 4.4224 3.2664 -1.0747 24 1 -0.3633 0.4482 0.9247 25 1 -0.3633 0.5768 -0.8506 26 1 -0.3632 -1.0250 -0.0742 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.4741 1.7418 1.9932 30 1 2.0806 3.1615 1.1072 31 1 3.4772 3.5630 4.4904 32 1 2.8889 3.5475 -3.3109 33 1 1.4304 4.1871 -2.5161 34 1 2.8580 6.0262 -3.3693 35 1 2.7572 6.0668 -1.5925 36 1 5.0278 4.8362 -3.2193 37 1 5.0926 6.3933 -2.3599 38 1 4.6952 2.7478 -0.1556 39 1 4.7961 2.7072 -1.9325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424713457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:55 Heat of formation + Delta-G solvation = -114.310464 kcal Electronic energy + Delta-G solvation = -20813.779934 eV Core-core repulsion = 17669.573738 eV Total energy + Delta-G solvation = -3144.206196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.07785 -39.47939 -36.72638 -35.12862 -32.76651 -31.32601 -30.00721 -29.68881 -27.00291 -23.95001 -23.04544 -22.34371 -21.71614 -19.41878 -18.16148 -16.58523 -16.39761 -15.93752 -15.21333 -14.96393 -14.79139 -14.50040 -14.20668 -13.71495 -13.26842 -13.13247 -12.63846 -12.37188 -12.25800 -11.99609 -11.91148 -11.56020 -11.44916 -11.23318 -11.11868 -10.95480 -10.83305 -10.70626 -10.46638 -10.39955 -10.02198 -9.93117 -9.77331 -9.57484 -8.83370 -8.48519 -7.67817 -6.14677 -4.21009 3.23875 3.31463 3.32532 3.43554 3.97903 4.35390 4.84411 4.87878 5.00526 5.18885 5.20448 5.41938 5.50859 5.57540 5.65591 5.72742 5.73289 5.83528 5.86528 5.91999 5.98086 6.18456 6.23358 6.29372 6.36475 6.43699 6.46523 6.52463 6.67218 6.72381 6.86460 6.88988 7.26858 7.59034 7.78776 8.09088 8.39803 8.82014 9.07084 9.45620 10.92315 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.011027 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.014453 B = 2538.562764 C = 4018.286808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.594 5.594 4 C 0.236 3.764 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.285 1.285 13 C 0.520 3.480 14 O -0.578 6.578 15 C -0.099 4.099 16 H 0.104 0.896 17 C -0.102 4.102 18 C -0.118 4.118 19 C -0.145 4.145 20 C 0.097 3.903 21 H 0.077 0.923 22 F -0.205 7.205 23 C -0.138 4.138 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.746 2.109 -8.323 8.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.324 5.324 4 C 0.116 3.884 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.198 1.198 12 H -0.210 1.210 13 C 0.309 3.691 14 O -0.460 6.460 15 C -0.120 4.120 16 H 0.122 0.878 17 C -0.140 4.140 18 C -0.156 4.156 19 C -0.183 4.183 20 C 0.061 3.939 21 H 0.095 0.905 22 F -0.185 7.185 23 C -0.176 4.176 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.582 1.944 -8.626 8.862 hybrid contribution 0.936 -0.101 0.747 1.202 sum 1.518 1.843 -7.880 8.233 Atomic orbital electron populations 1.22099 0.96972 1.01094 1.01902 1.21224 0.93433 0.84005 1.02222 1.48292 1.62680 1.13401 1.08036 1.19475 0.97109 0.92627 0.79186 1.21388 0.98739 1.30750 1.06494 0.92130 1.24897 0.97424 0.94672 0.96436 1.69909 1.35634 1.31282 1.15570 0.86592 0.84506 0.77832 0.79123 1.20648 1.19776 1.21022 1.20453 0.77603 0.87794 0.83280 1.90559 1.55788 1.67965 1.31691 1.21168 0.96427 0.94252 1.00189 0.87802 1.21405 1.00370 0.94852 0.97347 1.21497 0.94610 0.97433 1.02048 1.22155 0.97568 1.00937 0.97636 1.21440 0.98112 0.91173 0.83167 0.90522 1.92841 1.90241 1.79631 1.55826 1.22149 0.93896 0.96207 1.05378 0.92610 0.92870 0.92574 0.91285 0.90595 0.94835 0.94081 0.92546 0.91223 0.92051 0.91836 0.91283 0.90499 0.91341 0.87325 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.11 2.16 6.13 -4.04 -0.02 2.14 16 3 N -0.59 -12.68 2.46 -175.06 -0.43 -13.11 16 4 C 0.24 5.61 4.98 -5.20 -0.03 5.58 16 5 C -0.54 -13.61 7.57 -34.44 -0.26 -13.87 16 6 H 0.06 1.55 7.42 -52.49 -0.39 1.16 16 7 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.89 -24.47 13.29 55.43 0.74 -23.73 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.52 10.98 6.76 -10.99 -0.07 10.91 16 14 O -0.58 -13.08 15.71 5.56 0.09 -12.99 16 15 C -0.10 -1.87 1.81 -91.77 -0.17 -2.04 16 16 H 0.10 2.15 5.56 -51.93 -0.29 1.87 16 17 C -0.10 -1.63 4.76 -26.73 -0.13 -1.76 16 18 C -0.12 -1.61 5.80 -26.73 -0.16 -1.77 16 19 C -0.15 -1.88 5.72 -26.73 -0.15 -2.03 16 20 C 0.10 1.55 4.12 -26.73 -0.11 1.44 16 21 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 22 F -0.20 -3.97 16.04 2.25 0.04 -3.93 16 23 C -0.14 -2.48 4.98 -26.73 -0.13 -2.62 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.30 7.42 -51.93 -0.39 0.92 16 28 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 29 H 0.03 0.84 8.09 -51.93 -0.42 0.42 16 30 H 0.04 1.03 5.83 -51.93 -0.30 0.73 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.01 7.80 -51.93 -0.41 0.60 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.11 2.27 5.70 -51.93 -0.30 1.97 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 312.03 15.07 4.70 4.70 Total: -1.00 -28.53 312.03 -7.09 -35.62 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.26 Total: 2.54 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.95 Total: -4.59 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.31 Total: -36.84 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.53 -7.09 -35.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424713457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.689 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds