Wall clock time and date at job start Mon Mar 30 2020 06:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47004 * 2 1 4 4 C 1.46498 * 119.99782 * 87.41642 * 3 2 1 5 5 C 1.50699 * 109.47249 * 88.11624 * 4 3 2 6 6 H 1.07998 * 120.00101 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00224 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99558 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00138 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47403 * 270.00057 * 9 7 5 11 11 H 1.48505 * 109.47279 * 30.00159 * 9 7 5 12 12 H 1.48497 * 109.47311 * 149.99909 * 9 7 5 13 13 C 1.34776 * 119.99824 * 267.41209 * 3 2 1 14 14 O 1.21276 * 120.00025 * 4.92576 * 13 3 2 15 15 C 1.50694 * 119.99915 * 184.92211 * 13 3 2 16 16 H 1.09003 * 109.47459 * 326.64364 * 15 13 3 17 17 C 1.53003 * 109.47200 * 206.64541 * 15 13 3 18 18 C 1.53005 * 109.47173 * 179.97438 * 17 15 13 19 19 C 1.53005 * 109.46831 * 59.99981 * 18 17 15 20 20 C 1.53003 * 109.47258 * 299.99967 * 19 18 17 21 21 H 1.09001 * 109.47127 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47097 * 299.99901 * 20 19 18 23 23 C 1.52996 * 109.47016 * 59.99857 * 20 19 18 24 24 H 1.08997 * 109.47257 * 295.85985 * 1 2 3 25 25 H 1.09001 * 109.46746 * 55.85709 * 1 2 3 26 26 H 1.08998 * 109.46575 * 175.85702 * 1 2 3 27 27 H 1.09000 * 109.47475 * 240.00044 * 2 1 3 28 28 H 1.09002 * 109.46872 * 119.99472 * 2 1 3 29 29 H 1.08995 * 109.47604 * 328.11213 * 4 3 2 30 30 H 1.09003 * 109.46963 * 208.11131 * 4 3 2 31 31 H 0.97001 * 119.99671 * 180.02562 * 8 7 5 32 32 H 1.08990 * 109.47071 * 299.99747 * 17 15 13 33 33 H 1.08994 * 109.46904 * 60.00302 * 17 15 13 34 34 H 1.08993 * 109.47053 * 179.97438 * 18 17 15 35 35 H 1.08994 * 109.47361 * 300.00438 * 18 17 15 36 36 H 1.09003 * 109.46983 * 59.99535 * 19 18 17 37 37 H 1.08998 * 109.47271 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47226 * 180.02562 * 23 20 19 39 39 H 1.09003 * 109.47482 * 60.00276 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2086 2.0909 1.2674 5 6 3.5968 1.8236 1.7894 6 1 4.2699 1.1883 1.2329 7 6 4.0076 2.3901 2.9774 8 7 3.1881 3.1642 3.6548 9 14 5.7281 2.0582 3.6248 10 1 5.7064 0.8542 4.4937 11 1 6.6505 1.8287 2.4838 12 1 6.1952 3.2279 4.4113 13 6 2.2927 1.9990 -1.1660 14 8 2.0513 1.4447 -2.2173 15 6 2.8991 3.3785 -1.1634 16 1 2.5258 3.9380 -0.3056 17 6 2.5156 4.1068 -2.4532 18 6 3.1308 5.5077 -2.4502 19 6 4.6542 5.3954 -2.3615 20 6 5.0377 4.6672 -1.0717 21 1 6.1229 4.5869 -1.0088 22 9 4.5581 5.3849 0.0292 23 6 4.4224 3.2664 -1.0747 24 1 -0.3633 0.4482 0.9247 25 1 -0.3633 0.5768 -0.8506 26 1 -0.3632 -1.0250 -0.0742 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.4741 1.7418 1.9932 30 1 2.0806 3.1615 1.1072 31 1 3.4772 3.5630 4.4904 32 1 2.8889 3.5475 -3.3109 33 1 1.4304 4.1871 -2.5161 34 1 2.8580 6.0262 -3.3693 35 1 2.7572 6.0668 -1.5925 36 1 5.0278 4.8362 -3.2193 37 1 5.0926 6.3933 -2.3599 38 1 4.6952 2.7478 -0.1556 39 1 4.7961 2.7072 -1.9325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424713457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:54 Heat of formation + Delta-G solvation = -129.141545 kcal Electronic energy + Delta-G solvation = -20814.423058 eV Core-core repulsion = 17669.573738 eV Total energy + Delta-G solvation = -3144.849320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.48010 -41.12431 -38.08350 -36.89426 -34.69718 -32.79508 -31.31112 -31.12675 -28.92834 -25.37456 -24.98858 -23.62324 -23.13266 -20.72114 -19.81326 -18.50424 -18.09134 -17.49130 -16.72982 -16.50887 -16.27481 -15.96658 -15.76161 -15.24585 -14.76280 -14.50944 -14.32650 -14.10839 -13.63590 -13.39957 -13.33057 -13.15067 -13.10170 -12.74017 -12.69955 -12.58384 -12.43518 -12.14973 -12.00951 -11.80822 -11.70794 -11.53212 -11.35742 -10.92915 -10.60112 -10.38300 -9.46483 -8.17441 -6.29787 1.40645 1.42638 1.51253 1.73938 2.30837 2.46024 3.13812 3.54138 3.66353 3.74822 3.94036 4.05333 4.17863 4.23894 4.32866 4.38708 4.41427 4.46224 4.53470 4.56071 4.75089 4.80918 4.95933 5.00542 5.02948 5.08436 5.10650 5.17447 5.23106 5.26348 5.31575 5.41645 5.52249 5.68515 5.86642 6.07593 6.58458 6.82985 7.31552 7.43358 8.88883 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.011027 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.014453 B = 2538.562764 C = 4018.286808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 N -0.600 5.600 4 C 0.253 3.747 5 C -0.533 4.533 6 H 0.056 0.944 7 C 0.025 3.975 8 N -0.919 5.919 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.265 1.265 12 H -0.285 1.285 13 C 0.515 3.485 14 O -0.593 6.593 15 C -0.097 4.097 16 H 0.078 0.922 17 C -0.096 4.096 18 C -0.115 4.115 19 C -0.138 4.138 20 C 0.089 3.911 21 H 0.100 0.900 22 F -0.229 7.229 23 C -0.135 4.135 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.017 0.983 30 H 0.025 0.975 31 H 0.266 0.734 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 2.220 -9.634 10.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.329 5.329 4 C 0.133 3.867 5 C -0.571 4.571 6 H 0.074 0.926 7 C -0.176 4.176 8 N -0.558 5.558 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.190 1.190 12 H -0.210 1.210 13 C 0.305 3.695 14 O -0.476 6.476 15 C -0.118 4.118 16 H 0.096 0.904 17 C -0.134 4.134 18 C -0.152 4.152 19 C -0.175 4.175 20 C 0.053 3.947 21 H 0.117 0.883 22 F -0.210 7.210 23 C -0.174 4.174 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.642 2.039 -9.947 10.286 hybrid contribution 0.565 -0.192 1.132 1.280 sum 2.207 1.847 -8.815 9.273 Atomic orbital electron populations 1.22004 0.94940 1.02929 1.01124 1.21413 0.95150 0.82692 1.02238 1.48330 1.62943 1.14317 1.07346 1.19082 0.96050 0.91826 0.79786 1.21513 0.99149 1.30140 1.06339 0.92557 1.25593 1.00739 0.94523 0.96747 1.70012 1.37340 1.32405 1.16024 0.85687 0.80557 0.77663 0.78654 1.20069 1.18979 1.21019 1.20880 0.77208 0.88580 0.82842 1.90538 1.56507 1.68635 1.31899 1.21168 0.97008 0.92766 1.00881 0.90356 1.21385 1.00375 0.96110 0.95511 1.21498 0.95140 0.95651 1.02947 1.22152 0.96922 1.02060 0.96366 1.21752 0.99177 0.89921 0.83866 0.88260 1.92796 1.90651 1.80065 1.57459 1.22086 0.93248 0.97812 1.04204 0.93103 0.93880 0.89377 0.91179 0.90560 0.96482 0.95749 0.92542 0.90880 0.92504 0.88809 0.92747 0.88227 0.89168 0.90691 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 10.24 71.98 0.74 -4.14 16 2 C 0.11 4.05 6.13 86.38 0.53 4.58 16 3 N -0.60 -26.04 2.46 -826.15 -2.03 -28.06 16 4 C 0.25 12.43 4.98 85.63 0.43 12.86 16 5 C -0.53 -27.55 7.57 25.60 0.19 -27.36 16 6 H 0.06 2.92 7.42 -2.91 -0.02 2.90 16 7 C 0.02 1.30 5.46 84.66 0.46 1.76 16 8 N -0.92 -51.62 13.29 21.45 0.28 -51.33 16 9 Si 0.95 42.05 29.54 68.60 2.03 44.08 16 10 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 13 C 0.52 21.93 6.76 87.66 0.59 22.52 16 14 O -0.59 -26.60 15.71 -3.02 -0.05 -26.65 16 15 C -0.10 -3.68 1.81 -11.54 -0.02 -3.71 16 16 H 0.08 3.38 5.56 -2.39 -0.01 3.37 16 17 C -0.10 -2.96 4.76 30.60 0.15 -2.81 16 18 C -0.11 -2.87 5.80 30.60 0.18 -2.69 16 19 C -0.14 -3.12 5.72 30.60 0.17 -2.94 16 20 C 0.09 2.68 4.12 30.59 0.13 2.81 16 21 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 22 F -0.23 -8.83 16.04 44.97 0.72 -8.11 16 23 C -0.14 -4.79 4.98 30.59 0.15 -4.64 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.07 2.61 7.42 -2.39 -0.02 2.60 16 28 H 0.08 2.83 8.09 -2.39 -0.02 2.81 16 29 H 0.02 0.89 8.09 -2.39 -0.02 0.87 16 30 H 0.02 1.29 5.83 -2.39 -0.01 1.28 16 31 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.07 2.21 7.86 -2.39 -0.02 2.20 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.53 7.80 -2.39 -0.02 1.51 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 3.16 5.70 -2.39 -0.01 3.15 16 39 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -61.40 312.03 5.67 -55.73 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.02 Total: 18.12 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 3.70 Total: -3.76 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -1.74 Total: -79.40 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.05 Total: -26.65 kcal Atomic # 9 Polarization: -8.83 SS G_CDS: 0.72 Total: -8.11 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -61.40 5.67 -55.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424713457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.411 kcal (2) G-P(sol) polarization free energy of solvation -61.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds