Wall clock time and date at job start Mon Mar 30 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46879 * 2 1 4 4 C 1.46503 * 120.00008 * 264.91040 * 3 2 1 5 5 C 1.50694 * 109.47179 * 275.64268 * 4 3 2 6 6 H 1.08006 * 120.00071 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00167 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00438 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99657 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47183 * 90.00243 * 9 7 5 11 11 H 1.48501 * 109.47304 * 209.99870 * 9 7 5 12 12 H 1.48500 * 109.47257 * 329.99795 * 9 7 5 13 13 C 1.34780 * 119.99925 * 84.91373 * 3 2 1 14 14 O 1.21279 * 120.00298 * 5.01274 * 13 3 2 15 15 C 1.50701 * 119.99799 * 185.00570 * 13 3 2 16 16 H 1.08997 * 109.47410 * 306.50340 * 15 13 3 17 17 C 1.53003 * 109.47074 * 186.50149 * 15 13 3 18 18 C 1.52997 * 109.46874 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47458 * 59.99892 * 18 17 15 20 20 C 1.52993 * 109.47089 * 300.00004 * 19 18 17 21 21 H 1.08997 * 109.47135 * 299.99927 * 20 19 18 22 22 F 1.39903 * 109.47221 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.46851 * 66.50291 * 15 13 3 24 24 H 1.08998 * 109.47120 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47204 * 300.00113 * 1 2 3 26 26 H 1.08995 * 109.47115 * 60.00530 * 1 2 3 27 27 H 1.08998 * 109.47815 * 239.99788 * 2 1 3 28 28 H 1.09000 * 109.47306 * 119.99899 * 2 1 3 29 29 H 1.09004 * 109.46749 * 35.64105 * 4 3 2 30 30 H 1.08996 * 109.46774 * 155.64002 * 4 3 2 31 31 H 0.96998 * 120.00376 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47231 * 59.99890 * 17 15 13 33 33 H 1.09006 * 109.46922 * 300.00502 * 17 15 13 34 34 H 1.09004 * 109.46598 * 179.97438 * 18 17 15 35 35 H 1.08997 * 109.47004 * 299.99819 * 18 17 15 36 36 H 1.08997 * 109.47073 * 59.99969 * 19 18 17 37 37 H 1.09006 * 109.47107 * 179.97438 * 19 18 17 38 38 H 1.09006 * 109.47064 * 59.99548 * 23 15 13 39 39 H 1.09005 * 109.47378 * 300.00057 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3685 2.0344 -1.2637 5 6 3.7819 1.6728 -1.6412 6 1 4.3616 1.0219 -1.0033 7 6 4.3352 2.1729 -2.8009 8 7 5.5688 1.8578 -3.1301 9 14 3.3324 3.2980 -3.9045 10 1 3.5393 4.7093 -3.4915 11 1 3.7679 3.1258 -5.3137 12 1 1.8928 2.9534 -3.7857 13 6 2.1453 2.0511 1.1626 14 8 1.9429 1.4832 2.2150 15 6 2.5390 3.5058 1.1550 16 1 3.4562 3.6310 0.5795 17 6 2.7696 3.9793 2.5915 18 6 3.1686 5.4563 2.5837 19 6 2.0499 6.2835 1.9474 20 6 1.8194 5.8100 0.5110 21 1 2.7364 5.9356 -0.0646 22 9 0.7960 6.5661 -0.0707 23 6 1.4206 4.3334 0.5185 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6868 1.7008 -2.0462 30 1 2.2884 3.1153 -1.1485 31 1 5.9582 2.2099 -3.9457 32 1 3.5663 3.3896 3.0450 33 1 1.8523 3.8540 3.1670 34 1 3.3324 5.7937 3.6072 35 1 4.0857 5.5818 2.0082 36 1 1.1328 6.1580 2.5230 37 1 2.3341 7.3359 1.9423 38 1 0.5034 4.2081 1.0940 39 1 1.2563 3.9960 -0.5049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424713459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:57 Heat of formation + Delta-G solvation = -108.653191 kcal Electronic energy + Delta-G solvation = -20572.719946 eV Core-core repulsion = 17428.759067 eV Total energy + Delta-G solvation = -3143.960879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.48638 -39.81878 -37.12583 -35.35771 -32.76485 -31.69377 -29.97784 -29.88915 -27.65279 -24.09899 -22.96014 -22.33522 -21.79487 -20.00386 -18.30755 -17.09120 -16.52352 -16.01479 -15.71988 -15.10955 -15.09096 -14.61952 -14.38283 -13.76055 -13.64146 -13.36244 -12.95163 -12.72495 -12.59293 -12.46267 -12.02402 -11.84078 -11.58335 -11.37824 -11.13094 -11.03980 -10.89441 -10.71656 -10.53038 -10.47690 -10.39003 -10.29644 -10.05362 -9.60834 -9.02206 -8.73827 -7.77324 -6.25292 -4.26939 3.14052 3.22565 3.24565 3.26794 3.78195 4.22780 4.55007 4.60714 4.73104 4.97884 5.04292 5.17349 5.22071 5.34045 5.41607 5.51989 5.59025 5.67417 5.74106 5.80241 5.82560 5.95025 6.03230 6.13453 6.16084 6.21270 6.21819 6.36835 6.41792 6.49227 6.54590 6.59410 6.70123 7.32322 7.42048 8.09602 8.39256 8.78660 8.89453 9.33940 10.87338 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.009527 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.827727 B = 2938.204391 C = 3893.684980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.589 5.589 4 C 0.197 3.803 5 C -0.542 4.542 6 H 0.078 0.922 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.866 3.134 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.524 3.476 14 O -0.568 6.568 15 C -0.104 4.104 16 H 0.111 0.889 17 C -0.099 4.099 18 C -0.117 4.117 19 C -0.143 4.143 20 C 0.091 3.909 21 H 0.088 0.912 22 F -0.217 7.217 23 C -0.143 4.143 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.267 0.733 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 6.194 6.646 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.319 5.319 4 C 0.076 3.924 5 C -0.580 4.580 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.527 5.527 9 Si 0.692 3.308 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.188 1.188 13 C 0.312 3.688 14 O -0.449 6.449 15 C -0.125 4.125 16 H 0.129 0.871 17 C -0.137 4.137 18 C -0.155 4.155 19 C -0.181 4.181 20 C 0.055 3.945 21 H 0.106 0.894 22 F -0.198 7.198 23 C -0.180 4.180 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.470 5.925 6.997 11.827 hybrid contribution -0.347 0.579 -0.996 1.203 sum -7.818 6.504 6.001 11.808 Atomic orbital electron populations 1.22119 0.96919 1.01402 1.01757 1.21249 0.93121 0.83583 1.02890 1.47930 1.62956 1.13372 1.07602 1.20086 0.97080 0.93793 0.81414 1.21381 0.96606 1.31771 1.08244 0.90375 1.24866 0.94733 0.95898 0.97155 1.69884 1.13611 1.44324 1.24919 0.87000 0.81214 0.81746 0.80811 1.19647 1.20753 1.18773 1.20291 0.76547 0.88577 0.83336 1.90589 1.52843 1.70228 1.31195 1.21201 1.00635 0.92086 0.98579 0.87125 1.21365 1.02627 0.94775 0.94953 1.21506 0.98023 0.94976 1.00976 1.22126 1.00560 1.00303 0.95077 1.21597 0.88751 0.89935 0.94236 0.89420 1.92789 1.62789 1.78016 1.86208 1.22287 0.98924 0.93437 1.03392 0.92234 0.92799 0.92816 0.90069 0.91055 0.95081 0.94017 0.92317 0.90985 0.91288 0.91144 0.91243 0.90893 0.91001 0.90720 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.20 37.16 0.38 -2.12 16 2 C 0.11 2.09 6.14 -4.04 -0.02 2.07 16 3 N -0.59 -11.93 2.47 -175.06 -0.43 -12.36 16 4 C 0.20 4.28 3.65 -5.19 -0.02 4.26 16 5 C -0.54 -14.09 9.93 -34.44 -0.34 -14.43 16 6 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -25.59 13.96 55.43 0.77 -24.81 16 9 Si 0.87 19.55 27.47 -169.99 -4.67 14.88 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 13 C 0.52 10.45 6.94 -10.98 -0.08 10.37 16 14 O -0.57 -12.36 15.61 5.56 0.09 -12.27 16 15 C -0.10 -1.75 1.69 -91.77 -0.15 -1.90 16 16 H 0.11 2.00 7.68 -51.93 -0.40 1.60 16 17 C -0.10 -1.44 4.52 -26.73 -0.12 -1.56 16 18 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 19 C -0.14 -1.66 5.66 -26.74 -0.15 -1.81 16 20 C 0.09 1.27 3.87 -26.76 -0.10 1.16 16 21 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 22 F -0.22 -3.34 17.08 2.25 0.04 -3.30 16 23 C -0.14 -2.20 4.54 -26.75 -0.12 -2.32 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 28 H 0.07 1.33 7.51 -51.93 -0.39 0.94 16 29 H 0.03 0.67 7.17 -51.93 -0.37 0.30 16 30 H 0.04 0.86 3.42 -51.93 -0.18 0.69 16 31 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.07 1.01 8.03 -51.93 -0.42 0.60 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.51 5.37 -51.93 -0.28 1.23 16 LS Contribution 310.88 15.07 4.68 4.68 Total: -1.00 -29.29 310.88 -6.78 -36.07 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.27 Total: 2.97 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.99 Total: -5.86 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.34 Total: -37.17 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.04 Total: -3.30 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.67 Total: 14.88 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.29 -6.78 -36.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424713459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.585 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds