Wall clock time and date at job start Mon Mar 30 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46879 * 2 1 4 4 C 1.46503 * 120.00008 * 264.91040 * 3 2 1 5 5 C 1.50694 * 109.47179 * 275.64268 * 4 3 2 6 6 H 1.08006 * 120.00071 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00167 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00438 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99657 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47183 * 90.00243 * 9 7 5 11 11 H 1.48501 * 109.47304 * 209.99870 * 9 7 5 12 12 H 1.48500 * 109.47257 * 329.99795 * 9 7 5 13 13 C 1.34780 * 119.99925 * 84.91373 * 3 2 1 14 14 O 1.21279 * 120.00298 * 5.01274 * 13 3 2 15 15 C 1.50701 * 119.99799 * 185.00570 * 13 3 2 16 16 H 1.08997 * 109.47410 * 306.50340 * 15 13 3 17 17 C 1.53003 * 109.47074 * 186.50149 * 15 13 3 18 18 C 1.52997 * 109.46874 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47458 * 59.99892 * 18 17 15 20 20 C 1.52993 * 109.47089 * 300.00004 * 19 18 17 21 21 H 1.08997 * 109.47135 * 299.99927 * 20 19 18 22 22 F 1.39903 * 109.47221 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.46851 * 66.50291 * 15 13 3 24 24 H 1.08998 * 109.47120 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.47204 * 300.00113 * 1 2 3 26 26 H 1.08995 * 109.47115 * 60.00530 * 1 2 3 27 27 H 1.08998 * 109.47815 * 239.99788 * 2 1 3 28 28 H 1.09000 * 109.47306 * 119.99899 * 2 1 3 29 29 H 1.09004 * 109.46749 * 35.64105 * 4 3 2 30 30 H 1.08996 * 109.46774 * 155.64002 * 4 3 2 31 31 H 0.96998 * 120.00376 * 180.02562 * 8 7 5 32 32 H 1.08995 * 109.47231 * 59.99890 * 17 15 13 33 33 H 1.09006 * 109.46922 * 300.00502 * 17 15 13 34 34 H 1.09004 * 109.46598 * 179.97438 * 18 17 15 35 35 H 1.08997 * 109.47004 * 299.99819 * 18 17 15 36 36 H 1.08997 * 109.47073 * 59.99969 * 19 18 17 37 37 H 1.09006 * 109.47107 * 179.97438 * 19 18 17 38 38 H 1.09006 * 109.47064 * 59.99548 * 23 15 13 39 39 H 1.09005 * 109.47378 * 300.00057 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3685 2.0344 -1.2637 5 6 3.7819 1.6728 -1.6412 6 1 4.3616 1.0219 -1.0033 7 6 4.3352 2.1729 -2.8009 8 7 5.5688 1.8578 -3.1301 9 14 3.3324 3.2980 -3.9045 10 1 3.5393 4.7093 -3.4915 11 1 3.7679 3.1258 -5.3137 12 1 1.8928 2.9534 -3.7857 13 6 2.1453 2.0511 1.1626 14 8 1.9429 1.4832 2.2150 15 6 2.5390 3.5058 1.1550 16 1 3.4562 3.6310 0.5795 17 6 2.7696 3.9793 2.5915 18 6 3.1686 5.4563 2.5837 19 6 2.0499 6.2835 1.9474 20 6 1.8194 5.8100 0.5110 21 1 2.7364 5.9356 -0.0646 22 9 0.7960 6.5661 -0.0707 23 6 1.4206 4.3334 0.5185 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6868 1.7008 -2.0462 30 1 2.2884 3.1153 -1.1485 31 1 5.9582 2.2099 -3.9457 32 1 3.5663 3.3896 3.0450 33 1 1.8523 3.8540 3.1670 34 1 3.3324 5.7937 3.6072 35 1 4.0857 5.5818 2.0082 36 1 1.1328 6.1580 2.5230 37 1 2.3341 7.3359 1.9423 38 1 0.5034 4.2081 1.0940 39 1 1.2563 3.9960 -0.5049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424713459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:56 Heat of formation + Delta-G solvation = -124.983460 kcal Electronic energy + Delta-G solvation = -20573.428080 eV Core-core repulsion = 17428.759067 eV Total energy + Delta-G solvation = -3144.669012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.62331 -41.32563 -38.36343 -37.03505 -34.71321 -33.04647 -31.33313 -31.05805 -29.46244 -25.42447 -24.63416 -23.66287 -23.07397 -21.14115 -19.84295 -19.09830 -18.03869 -17.47843 -16.91840 -16.49908 -16.37347 -16.16398 -15.77831 -15.16838 -14.89497 -14.72810 -14.64347 -14.19407 -13.93500 -13.79278 -13.38659 -13.29741 -13.12647 -12.68115 -12.57472 -12.42946 -12.24137 -12.09688 -12.02794 -11.87031 -11.73220 -11.62552 -11.53260 -11.18316 -10.81900 -10.50243 -9.45683 -8.32128 -6.39585 1.37935 1.40266 1.48845 1.68162 2.25905 2.32017 3.01488 3.35192 3.51217 3.58876 3.88031 3.88628 4.09380 4.16152 4.21931 4.34653 4.36169 4.40041 4.49016 4.54274 4.56903 4.71160 4.78950 4.89890 4.93461 4.99141 5.06039 5.07701 5.16753 5.20661 5.24863 5.28199 5.44096 5.46066 5.71525 6.15695 6.60759 6.67271 7.20623 7.32223 8.84305 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.009527 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.827727 B = 2938.204391 C = 3893.684980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.207 3.793 5 C -0.543 4.543 6 H 0.028 0.972 7 C 0.022 3.978 8 N -0.941 5.941 9 Si 0.932 3.068 10 H -0.256 1.256 11 H -0.284 1.284 12 H -0.239 1.239 13 C 0.516 3.484 14 O -0.590 6.590 15 C -0.100 4.100 16 H 0.095 0.905 17 C -0.096 4.096 18 C -0.110 4.110 19 C -0.137 4.137 20 C 0.089 3.911 21 H 0.090 0.910 22 F -0.223 7.223 23 C -0.138 4.138 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.269 0.731 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.314 8.171 6.610 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.326 5.326 4 C 0.086 3.914 5 C -0.582 4.582 6 H 0.046 0.954 7 C -0.177 4.177 8 N -0.580 5.580 9 Si 0.754 3.246 10 H -0.180 1.180 11 H -0.210 1.210 12 H -0.163 1.163 13 C 0.305 3.695 14 O -0.472 6.472 15 C -0.122 4.122 16 H 0.113 0.887 17 C -0.134 4.134 18 C -0.147 4.147 19 C -0.174 4.174 20 C 0.053 3.947 21 H 0.108 0.892 22 F -0.204 7.204 23 C -0.175 4.175 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.320 7.895 6.979 14.068 hybrid contribution 0.292 -0.167 -0.921 0.981 sum -9.028 7.728 6.058 13.339 Atomic orbital electron populations 1.22004 0.94101 1.03168 1.01589 1.21404 0.95419 0.82677 1.02102 1.48049 1.63025 1.14136 1.07374 1.19923 0.94349 0.94947 0.82213 1.21518 0.98368 1.30685 1.07592 0.95387 1.25748 0.95692 0.97529 0.98709 1.70043 1.15871 1.46273 1.25846 0.85936 0.80591 0.79958 0.78070 1.18048 1.21002 1.16264 1.20899 0.75892 0.89859 0.82814 1.90566 1.53818 1.71051 1.31757 1.21208 1.00360 0.90350 1.00244 0.88694 1.21355 1.02177 0.96790 0.93043 1.21482 0.98051 0.92612 1.02601 1.22104 1.00768 1.01286 0.93265 1.21670 0.88417 0.88689 0.95898 0.89201 1.92778 1.63154 1.78000 1.86492 1.22218 0.98475 0.94412 1.02445 0.89567 0.93594 0.92166 0.90580 0.92166 0.94106 0.92124 0.92188 0.92330 0.91367 0.88706 0.91124 0.90247 0.88910 0.90097 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 10.20 71.98 0.73 -3.64 16 2 C 0.11 3.90 6.14 86.38 0.53 4.43 16 3 N -0.60 -24.23 2.47 -826.15 -2.04 -26.27 16 4 C 0.21 8.86 3.65 85.63 0.31 9.17 16 5 C -0.54 -28.91 9.93 25.60 0.25 -28.65 16 6 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 7 C 0.02 1.20 5.47 84.66 0.46 1.67 16 8 N -0.94 -55.48 13.96 21.45 0.30 -55.18 16 9 Si 0.93 39.34 27.47 68.60 1.88 41.23 16 10 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 13 C 0.52 20.65 6.94 87.66 0.61 21.25 16 14 O -0.59 -25.90 15.61 -3.03 -0.05 -25.94 16 15 C -0.10 -3.32 1.69 -11.54 -0.02 -3.34 16 16 H 0.09 3.45 7.68 -2.39 -0.02 3.43 16 17 C -0.10 -2.67 4.52 30.59 0.14 -2.53 16 18 C -0.11 -2.27 5.92 30.59 0.18 -2.09 16 19 C -0.14 -2.72 5.66 30.59 0.17 -2.55 16 20 C 0.09 2.25 3.87 30.58 0.12 2.37 16 21 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 22 F -0.22 -6.23 17.08 44.97 0.77 -5.46 16 23 C -0.14 -3.99 4.54 30.58 0.14 -3.85 16 24 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 2.81 8.03 -2.39 -0.02 2.79 16 28 H 0.06 2.30 7.51 -2.39 -0.02 2.28 16 29 H 0.04 1.69 7.17 -2.38 -0.02 1.67 16 30 H 0.06 2.41 3.42 -2.39 -0.01 2.40 16 31 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.91 8.03 -2.38 -0.02 1.89 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.52 8.14 -2.38 -0.02 1.51 16 38 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.08 2.48 5.37 -2.38 -0.01 2.46 16 Total: -1.00 -64.32 310.88 5.46 -58.85 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.96 Total: 20.52 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 3.63 Total: -7.75 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -1.74 Total: -81.45 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.94 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.77 Total: -5.46 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 1.88 Total: 41.23 kcal Total: -64.32 5.46 -58.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424713459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.129 kcal (2) G-P(sol) polarization free energy of solvation -64.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds