Wall clock time and date at job start Mon Mar 30 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47040 * 2 1 4 4 C 1.46503 * 119.99735 * 94.45417 * 3 2 1 5 5 C 1.50705 * 109.46783 * 264.08312 * 4 3 2 6 6 H 1.07998 * 120.00404 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99598 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00259 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47267 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47400 * 299.99882 * 9 7 5 12 12 H 1.48512 * 109.47160 * 59.99722 * 9 7 5 13 13 C 1.34767 * 120.00431 * 274.45496 * 3 2 1 14 14 O 1.21289 * 119.99779 * 3.92549 * 13 3 2 15 15 C 1.50704 * 120.00535 * 183.93035 * 13 3 2 16 16 H 1.08999 * 109.46904 * 26.52088 * 15 13 3 17 17 C 1.52994 * 109.47434 * 146.52855 * 15 13 3 18 18 C 1.53002 * 109.47077 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.46903 * 300.00027 * 18 17 15 20 20 C 1.52994 * 109.47276 * 60.00095 * 19 18 17 21 21 H 1.09003 * 109.47225 * 179.97438 * 20 19 18 22 22 F 1.39902 * 109.47523 * 59.99946 * 20 19 18 23 23 C 1.53001 * 109.46634 * 266.52936 * 15 13 3 24 24 H 1.08995 * 109.46807 * 299.99701 * 1 2 3 25 25 H 1.08998 * 109.47061 * 59.99909 * 1 2 3 26 26 H 1.08997 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47265 * 240.00029 * 2 1 3 28 28 H 1.08998 * 109.47061 * 120.00091 * 2 1 3 29 29 H 1.09001 * 109.47174 * 144.08727 * 4 3 2 30 30 H 1.08998 * 109.47315 * 24.07704 * 4 3 2 31 31 H 0.97005 * 120.00108 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46995 * 299.99758 * 17 15 13 33 33 H 1.09004 * 109.47308 * 60.00338 * 17 15 13 34 34 H 1.08995 * 109.46801 * 59.99856 * 18 17 15 35 35 H 1.08997 * 109.47158 * 179.97438 * 18 17 15 36 36 H 1.09004 * 109.47039 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.47253 * 299.99552 * 19 18 17 38 38 H 1.09004 * 109.47483 * 299.99280 * 23 15 13 39 39 H 1.08997 * 109.47375 * 59.99664 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3554 2.0389 1.2650 5 6 1.1794 2.8556 1.7354 6 1 0.2719 2.8824 1.1505 7 6 1.2624 3.5694 2.9121 8 7 2.3677 3.5372 3.6242 9 14 -0.1949 4.5823 3.4949 10 1 0.1467 5.2489 4.7771 11 1 -0.5234 5.6098 2.4744 12 1 -1.3669 3.6927 3.6968 13 6 2.1575 2.0468 -1.1635 14 8 1.8117 1.5281 -2.2040 15 6 2.7429 3.4355 -1.1720 16 1 3.4007 3.5577 -0.3116 17 6 3.5429 3.6439 -2.4594 18 6 4.1367 5.0540 -2.4683 19 6 3.0070 6.0834 -2.3974 20 6 2.2070 5.8750 -1.1101 21 1 1.4025 6.6087 -1.0594 22 9 3.0513 6.0324 -0.0056 23 6 1.6136 4.4653 -1.1009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.2154 2.6921 1.1170 30 1 2.5966 1.2845 2.0138 31 1 2.4259 4.0392 4.4522 32 1 4.3474 2.9102 -2.5100 33 1 2.8850 3.5218 -3.3199 34 1 4.7944 5.1765 -1.6078 35 1 4.7070 5.2023 -3.3852 36 1 3.4300 7.0880 -2.4033 37 1 2.3492 5.9608 -3.2578 38 1 0.9557 4.3432 -1.9614 39 1 1.0437 4.3168 -0.1838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424713460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:59 Heat of formation + Delta-G solvation = -113.742198 kcal Electronic energy + Delta-G solvation = -20912.622204 eV Core-core repulsion = 17768.440650 eV Total energy + Delta-G solvation = -3144.181555 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.06839 -39.46877 -36.72319 -35.10141 -32.72652 -31.28553 -30.02664 -29.63794 -27.01832 -23.94020 -22.90552 -22.36312 -21.77205 -19.44360 -18.11734 -16.58659 -16.48283 -15.92785 -15.08948 -14.91003 -14.76379 -14.44189 -14.23362 -13.75268 -13.24478 -13.01413 -12.64740 -12.36115 -12.19513 -11.98660 -11.93250 -11.42312 -11.40880 -11.28199 -11.11327 -10.98400 -10.83858 -10.69692 -10.46765 -10.38170 -9.96113 -9.88689 -9.77019 -9.54815 -8.81017 -8.47605 -7.67762 -6.13842 -4.19592 3.25530 3.31252 3.31806 3.45337 3.99099 4.36120 4.85043 4.88665 5.00968 5.19883 5.21636 5.42249 5.51972 5.58873 5.67026 5.73135 5.77712 5.85488 5.94292 5.99556 6.02761 6.19610 6.23720 6.29495 6.37694 6.43317 6.50734 6.56855 6.72083 6.83262 6.87480 6.92009 7.26525 7.60378 7.80603 8.10720 8.38402 8.83346 9.08686 9.46623 10.93259 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.010936 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.130385 B = 2559.649114 C = 3848.893961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 N -0.596 5.596 4 C 0.236 3.764 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.887 5.887 9 Si 0.890 3.110 10 H -0.286 1.286 11 H -0.275 1.275 12 H -0.277 1.277 13 C 0.523 3.477 14 O -0.578 6.578 15 C -0.098 4.098 16 H 0.104 0.896 17 C -0.103 4.103 18 C -0.118 4.118 19 C -0.145 4.145 20 C 0.097 3.903 21 H 0.076 0.924 22 F -0.205 7.205 23 C -0.137 4.137 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.039 0.961 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 2.018 -8.284 8.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.004 4.004 3 N -0.326 5.326 4 C 0.117 3.883 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.718 3.282 10 H -0.212 1.212 11 H -0.200 1.200 12 H -0.203 1.203 13 C 0.312 3.688 14 O -0.460 6.460 15 C -0.119 4.119 16 H 0.122 0.878 17 C -0.141 4.141 18 C -0.155 4.155 19 C -0.183 4.183 20 C 0.061 3.939 21 H 0.094 0.906 22 F -0.186 7.186 23 C -0.175 4.175 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.949 1.803 -8.574 8.813 hybrid contribution -0.807 0.634 0.703 1.244 sum 0.142 2.436 -7.871 8.241 Atomic orbital electron populations 1.22083 0.96544 1.00651 1.02811 1.21208 0.94439 0.83565 1.01182 1.48321 1.62944 1.13025 1.08329 1.19492 0.96662 0.93045 0.79142 1.21356 0.99889 1.28934 1.06929 0.92132 1.24885 0.95849 0.96339 0.96313 1.69895 1.26027 1.41557 1.14993 0.86676 0.82788 0.80495 0.78243 1.21156 1.20024 1.20268 1.20409 0.78043 0.87340 0.83055 1.90561 1.52740 1.70024 1.32648 1.21150 0.98320 0.92307 1.00154 0.87829 1.21418 0.99176 0.96056 0.97431 1.21488 0.97539 0.94442 1.02068 1.22150 0.98645 0.99814 0.97667 1.21437 0.91135 0.98251 0.83084 0.90576 1.92841 1.73340 1.96795 1.55579 1.22131 0.97936 0.92150 1.05310 0.91458 0.92877 0.93159 0.91849 0.91172 0.94280 0.94736 0.92511 0.92104 0.91185 0.91274 0.91837 0.91349 0.90489 0.91017 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.21 37.16 0.38 -2.53 16 2 C 0.12 2.24 6.10 -4.04 -0.02 2.22 16 3 N -0.60 -12.70 2.48 -175.06 -0.43 -13.13 16 4 C 0.24 5.60 5.00 -5.19 -0.03 5.57 16 5 C -0.53 -13.48 7.52 -34.44 -0.26 -13.74 16 6 H 0.06 1.55 7.34 -52.49 -0.39 1.17 16 7 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 8 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 C 0.52 11.06 6.60 -10.99 -0.07 10.99 16 14 O -0.58 -13.12 15.94 5.55 0.09 -13.03 16 15 C -0.10 -1.86 1.83 -91.77 -0.17 -2.03 16 16 H 0.10 2.15 5.52 -51.93 -0.29 1.86 16 17 C -0.10 -1.64 4.84 -26.73 -0.13 -1.77 16 18 C -0.12 -1.61 5.80 -26.73 -0.16 -1.76 16 19 C -0.14 -1.89 5.72 -26.73 -0.15 -2.04 16 20 C 0.10 1.56 4.12 -26.76 -0.11 1.45 16 21 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 22 F -0.20 -4.00 16.05 2.25 0.04 -3.96 16 23 C -0.14 -2.49 4.97 -26.76 -0.13 -2.63 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.16 7.62 -51.93 -0.40 0.76 16 28 H 0.07 1.22 7.79 -51.93 -0.40 0.82 16 29 H 0.04 0.98 5.94 -51.93 -0.31 0.67 16 30 H 0.03 0.86 7.79 -51.93 -0.40 0.45 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 34 H 0.07 1.01 7.80 -51.93 -0.41 0.60 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.11 2.26 5.66 -51.93 -0.29 1.96 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -28.44 311.68 -7.08 -35.52 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.23 Total: 2.62 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.95 Total: -4.54 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.30 Total: -36.83 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.09 Total: -13.03 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.44 -7.08 -35.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424713460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.225 kcal (2) G-P(sol) polarization free energy of solvation -28.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds