Wall clock time and date at job start Mon Mar 30 2020 06:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47040 * 2 1 4 4 C 1.46503 * 119.99735 * 94.45417 * 3 2 1 5 5 C 1.50705 * 109.46783 * 264.08312 * 4 3 2 6 6 H 1.07998 * 120.00404 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99598 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00259 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99951 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47267 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47400 * 299.99882 * 9 7 5 12 12 H 1.48512 * 109.47160 * 59.99722 * 9 7 5 13 13 C 1.34767 * 120.00431 * 274.45496 * 3 2 1 14 14 O 1.21289 * 119.99779 * 3.92549 * 13 3 2 15 15 C 1.50704 * 120.00535 * 183.93035 * 13 3 2 16 16 H 1.08999 * 109.46904 * 26.52088 * 15 13 3 17 17 C 1.52994 * 109.47434 * 146.52855 * 15 13 3 18 18 C 1.53002 * 109.47077 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.46903 * 300.00027 * 18 17 15 20 20 C 1.52994 * 109.47276 * 60.00095 * 19 18 17 21 21 H 1.09003 * 109.47225 * 179.97438 * 20 19 18 22 22 F 1.39902 * 109.47523 * 59.99946 * 20 19 18 23 23 C 1.53001 * 109.46634 * 266.52936 * 15 13 3 24 24 H 1.08995 * 109.46807 * 299.99701 * 1 2 3 25 25 H 1.08998 * 109.47061 * 59.99909 * 1 2 3 26 26 H 1.08997 * 109.46882 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47265 * 240.00029 * 2 1 3 28 28 H 1.08998 * 109.47061 * 120.00091 * 2 1 3 29 29 H 1.09001 * 109.47174 * 144.08727 * 4 3 2 30 30 H 1.08998 * 109.47315 * 24.07704 * 4 3 2 31 31 H 0.97005 * 120.00108 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.46995 * 299.99758 * 17 15 13 33 33 H 1.09004 * 109.47308 * 60.00338 * 17 15 13 34 34 H 1.08995 * 109.46801 * 59.99856 * 18 17 15 35 35 H 1.08997 * 109.47158 * 179.97438 * 18 17 15 36 36 H 1.09004 * 109.47039 * 179.97438 * 19 18 17 37 37 H 1.08995 * 109.47253 * 299.99552 * 19 18 17 38 38 H 1.09004 * 109.47483 * 299.99280 * 23 15 13 39 39 H 1.08997 * 109.47375 * 59.99664 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3554 2.0389 1.2650 5 6 1.1794 2.8556 1.7354 6 1 0.2719 2.8824 1.1505 7 6 1.2624 3.5694 2.9121 8 7 2.3677 3.5372 3.6242 9 14 -0.1949 4.5823 3.4949 10 1 0.1467 5.2489 4.7771 11 1 -0.5234 5.6098 2.4744 12 1 -1.3669 3.6927 3.6968 13 6 2.1575 2.0468 -1.1635 14 8 1.8117 1.5281 -2.2040 15 6 2.7429 3.4355 -1.1720 16 1 3.4007 3.5577 -0.3116 17 6 3.5429 3.6439 -2.4594 18 6 4.1367 5.0540 -2.4683 19 6 3.0070 6.0834 -2.3974 20 6 2.2070 5.8750 -1.1101 21 1 1.4025 6.6087 -1.0594 22 9 3.0513 6.0324 -0.0056 23 6 1.6136 4.4653 -1.1009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.2154 2.6921 1.1170 30 1 2.5966 1.2845 2.0138 31 1 2.4259 4.0392 4.4522 32 1 4.3474 2.9102 -2.5100 33 1 2.8850 3.5218 -3.3199 34 1 4.7944 5.1765 -1.6078 35 1 4.7070 5.2023 -3.3852 36 1 3.4300 7.0880 -2.4033 37 1 2.3492 5.9608 -3.2578 38 1 0.9557 4.3432 -1.9614 39 1 1.0437 4.3168 -0.1838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424713460.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:08:59 Heat of formation + Delta-G solvation = -128.529144 kcal Electronic energy + Delta-G solvation = -20913.263414 eV Core-core repulsion = 17768.440650 eV Total energy + Delta-G solvation = -3144.822765 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.48256 -41.11364 -38.08392 -36.86923 -34.66361 -32.76404 -31.34447 -31.09433 -28.94865 -25.41963 -24.82572 -23.66964 -23.17705 -20.75155 -19.75139 -18.55385 -18.11846 -17.48838 -16.62510 -16.43661 -16.22914 -15.98659 -15.76514 -15.29816 -14.75385 -14.40242 -14.38107 -13.99576 -13.75260 -13.42930 -13.34159 -13.16080 -12.98079 -12.76104 -12.70286 -12.62501 -12.44185 -12.17884 -11.98205 -11.74363 -11.67845 -11.52351 -11.35090 -10.92711 -10.58044 -10.36742 -9.46255 -8.16539 -6.27605 1.41267 1.41929 1.48726 1.75661 2.32303 2.46483 3.14946 3.54811 3.66398 3.74837 3.93842 4.06348 4.17686 4.25084 4.34295 4.40980 4.42851 4.48561 4.55354 4.56852 4.74942 4.79100 4.95893 5.02363 5.02993 5.08291 5.11701 5.17144 5.25885 5.27328 5.37106 5.41783 5.52524 5.69458 5.89380 6.09981 6.57393 6.84805 7.33350 7.44982 8.89740 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.014961 B = 0.010936 C = 0.007273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.130385 B = 2559.649114 C = 3848.893961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.111 3.889 3 N -0.602 5.602 4 C 0.253 3.747 5 C -0.527 4.527 6 H 0.055 0.945 7 C 0.026 3.974 8 N -0.918 5.918 9 Si 0.944 3.056 10 H -0.285 1.285 11 H -0.269 1.269 12 H -0.272 1.272 13 C 0.518 3.482 14 O -0.593 6.593 15 C -0.096 4.096 16 H 0.079 0.921 17 C -0.097 4.097 18 C -0.114 4.114 19 C -0.137 4.137 20 C 0.089 3.911 21 H 0.098 0.902 22 F -0.228 7.228 23 C -0.135 4.135 24 H 0.048 0.952 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.023 0.977 30 H 0.020 0.980 31 H 0.265 0.735 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.442 2.766 -9.644 10.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 N -0.331 5.331 4 C 0.132 3.868 5 C -0.566 4.566 6 H 0.073 0.927 7 C -0.175 4.175 8 N -0.558 5.558 9 Si 0.770 3.230 10 H -0.210 1.210 11 H -0.194 1.194 12 H -0.197 1.197 13 C 0.308 3.692 14 O -0.476 6.476 15 C -0.117 4.117 16 H 0.097 0.903 17 C -0.135 4.135 18 C -0.152 4.152 19 C -0.175 4.175 20 C 0.053 3.947 21 H 0.115 0.885 22 F -0.209 7.209 23 C -0.173 4.173 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.376 2.539 -9.945 10.271 hybrid contribution -0.632 0.322 1.101 1.310 sum -0.257 2.862 -8.843 9.298 Atomic orbital electron populations 1.21978 0.95645 1.02370 1.01026 1.21434 0.95185 0.82386 1.02136 1.48358 1.63100 1.14045 1.07622 1.19125 0.95697 0.92249 0.79755 1.21456 0.99855 1.28629 1.06630 0.92720 1.25546 0.97976 0.97384 0.96562 1.69995 1.27706 1.42639 1.15432 0.85818 0.80123 0.79310 0.77791 1.21032 1.19394 1.19696 1.20834 0.77658 0.88094 0.82638 1.90540 1.53574 1.70594 1.32876 1.21150 0.98421 0.91241 1.00919 0.90321 1.21403 0.98727 0.97854 0.95519 1.21490 0.97780 0.92909 1.03002 1.22147 0.98328 1.00681 0.96329 1.21741 0.92020 0.97139 0.83820 0.88453 1.92796 1.74142 1.96799 1.57202 1.22065 0.97581 0.93588 1.04040 0.93300 0.94369 0.89740 0.91092 0.89979 0.95888 0.96143 0.92582 0.92308 0.90903 0.92689 0.88757 0.89162 0.88279 0.89691 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 10.21 71.98 0.73 -4.57 16 2 C 0.11 4.12 6.10 86.38 0.53 4.65 16 3 N -0.60 -25.95 2.48 -826.15 -2.05 -28.00 16 4 C 0.25 12.29 5.00 85.63 0.43 12.72 16 5 C -0.53 -27.15 7.52 25.60 0.19 -26.96 16 6 H 0.05 2.85 7.34 -2.91 -0.02 2.83 16 7 C 0.03 1.36 5.46 84.66 0.46 1.83 16 8 N -0.92 -51.47 13.29 21.45 0.28 -51.19 16 9 Si 0.94 42.18 29.54 68.60 2.03 44.21 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.52 22.02 6.60 87.66 0.58 22.60 16 14 O -0.59 -26.62 15.94 -3.06 -0.05 -26.67 16 15 C -0.10 -3.65 1.83 -11.54 -0.02 -3.67 16 16 H 0.08 3.38 5.52 -2.39 -0.01 3.37 16 17 C -0.10 -2.98 4.84 30.59 0.15 -2.83 16 18 C -0.11 -2.85 5.80 30.60 0.18 -2.67 16 19 C -0.14 -3.14 5.72 30.59 0.17 -2.97 16 20 C 0.09 2.71 4.12 30.58 0.13 2.84 16 21 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 22 F -0.23 -8.87 16.05 44.97 0.72 -8.15 16 23 C -0.13 -4.83 4.97 30.58 0.15 -4.68 16 24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.07 2.53 7.62 -2.39 -0.02 2.51 16 28 H 0.08 2.82 7.79 -2.39 -0.02 2.80 16 29 H 0.02 1.21 5.94 -2.39 -0.01 1.19 16 30 H 0.02 1.05 7.79 -2.39 -0.02 1.03 16 31 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 2.20 7.85 -2.39 -0.02 2.19 16 34 H 0.05 1.53 7.80 -2.39 -0.02 1.52 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 1.73 8.14 -2.38 -0.02 1.72 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.07 3.11 5.66 -2.39 -0.01 3.10 16 Total: -1.00 -61.15 311.68 5.64 -55.52 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.02 Total: 17.99 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 3.68 Total: -3.70 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.76 Total: -79.19 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.67 kcal Atomic # 9 Polarization: -8.87 SS G_CDS: 0.72 Total: -8.15 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -61.15 5.64 -55.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424713460.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.010 kcal (2) G-P(sol) polarization free energy of solvation -61.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds