Wall clock time and date at job start Mon Mar 30 2020 06:08:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 N 1.46498 * 109.47040 * 2 1
4 4 C 1.46503 * 119.99735 * 94.45417 * 3 2 1
5 5 C 1.50705 * 109.46783 * 264.08312 * 4 3 2
6 6 H 1.07998 * 120.00404 * 359.97438 * 5 4 3
7 7 C 1.37880 * 119.99598 * 180.02562 * 5 4 3
8 8 N 1.31514 * 120.00259 * 359.97438 * 7 5 4
9 9 Si 1.86798 * 119.99951 * 179.97438 * 7 5 4
10 10 H 1.48497 * 109.47267 * 179.97438 * 9 7 5
11 11 H 1.48498 * 109.47400 * 299.99882 * 9 7 5
12 12 H 1.48512 * 109.47160 * 59.99722 * 9 7 5
13 13 C 1.34767 * 120.00431 * 274.45496 * 3 2 1
14 14 O 1.21289 * 119.99779 * 3.92549 * 13 3 2
15 15 C 1.50704 * 120.00535 * 183.93035 * 13 3 2
16 16 H 1.08999 * 109.46904 * 26.52088 * 15 13 3
17 17 C 1.52994 * 109.47434 * 146.52855 * 15 13 3
18 18 C 1.53002 * 109.47077 * 179.97438 * 17 15 13
19 19 C 1.53001 * 109.46903 * 300.00027 * 18 17 15
20 20 C 1.52994 * 109.47276 * 60.00095 * 19 18 17
21 21 H 1.09003 * 109.47225 * 179.97438 * 20 19 18
22 22 F 1.39902 * 109.47523 * 59.99946 * 20 19 18
23 23 C 1.53001 * 109.46634 * 266.52936 * 15 13 3
24 24 H 1.08995 * 109.46807 * 299.99701 * 1 2 3
25 25 H 1.08998 * 109.47061 * 59.99909 * 1 2 3
26 26 H 1.08997 * 109.46882 * 179.97438 * 1 2 3
27 27 H 1.08994 * 109.47265 * 240.00029 * 2 1 3
28 28 H 1.08998 * 109.47061 * 120.00091 * 2 1 3
29 29 H 1.09001 * 109.47174 * 144.08727 * 4 3 2
30 30 H 1.08998 * 109.47315 * 24.07704 * 4 3 2
31 31 H 0.97005 * 120.00108 * 180.02562 * 8 7 5
32 32 H 1.08996 * 109.46995 * 299.99758 * 17 15 13
33 33 H 1.09004 * 109.47308 * 60.00338 * 17 15 13
34 34 H 1.08995 * 109.46801 * 59.99856 * 18 17 15
35 35 H 1.08997 * 109.47158 * 179.97438 * 18 17 15
36 36 H 1.09004 * 109.47039 * 179.97438 * 19 18 17
37 37 H 1.08995 * 109.47253 * 299.99552 * 19 18 17
38 38 H 1.09004 * 109.47483 * 299.99280 * 23 15 13
39 39 H 1.08997 * 109.47375 * 59.99664 * 23 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3554 2.0389 1.2650
5 6 1.1794 2.8556 1.7354
6 1 0.2719 2.8824 1.1505
7 6 1.2624 3.5694 2.9121
8 7 2.3677 3.5372 3.6242
9 14 -0.1949 4.5823 3.4949
10 1 0.1467 5.2489 4.7771
11 1 -0.5234 5.6098 2.4744
12 1 -1.3669 3.6927 3.6968
13 6 2.1575 2.0468 -1.1635
14 8 1.8117 1.5281 -2.2040
15 6 2.7429 3.4355 -1.1720
16 1 3.4007 3.5577 -0.3116
17 6 3.5429 3.6439 -2.4594
18 6 4.1367 5.0540 -2.4683
19 6 3.0070 6.0834 -2.3974
20 6 2.2070 5.8750 -1.1101
21 1 1.4025 6.6087 -1.0594
22 9 3.0513 6.0324 -0.0056
23 6 1.6136 4.4653 -1.1009
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 -0.3633 -1.0276 -0.0005
27 1 1.8934 -0.5138 -0.8899
28 1 1.8934 -0.5138 0.8900
29 1 3.2154 2.6921 1.1170
30 1 2.5966 1.2845 2.0138
31 1 2.4259 4.0392 4.4522
32 1 4.3474 2.9102 -2.5100
33 1 2.8850 3.5218 -3.3199
34 1 4.7944 5.1765 -1.6078
35 1 4.7070 5.2023 -3.3852
36 1 3.4300 7.0880 -2.4033
37 1 2.3492 5.9608 -3.2578
38 1 0.9557 4.3432 -1.9614
39 1 1.0437 4.3168 -0.1838
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000424713460.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:08:59
Heat of formation + Delta-G solvation = -128.529144 kcal
Electronic energy + Delta-G solvation = -20913.263414 eV
Core-core repulsion = 17768.440650 eV
Total energy + Delta-G solvation = -3144.822765 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 257.153 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-48.48256 -41.11364 -38.08392 -36.86923 -34.66361 -32.76404 -31.34447 -31.09433
-28.94865 -25.41963 -24.82572 -23.66964 -23.17705 -20.75155 -19.75139 -18.55385
-18.11846 -17.48838 -16.62510 -16.43661 -16.22914 -15.98659 -15.76514 -15.29816
-14.75385 -14.40242 -14.38107 -13.99576 -13.75260 -13.42930 -13.34159 -13.16080
-12.98079 -12.76104 -12.70286 -12.62501 -12.44185 -12.17884 -11.98205 -11.74363
-11.67845 -11.52351 -11.35090 -10.92711 -10.58044 -10.36742 -9.46255 -8.16539
-6.27605 1.41267 1.41929 1.48726 1.75661 2.32303 2.46483 3.14946
3.54811 3.66398 3.74837 3.93842 4.06348 4.17686 4.25084 4.34295
4.40980 4.42851 4.48561 4.55354 4.56852 4.74942 4.79100 4.95893
5.02363 5.02993 5.08291 5.11701 5.17144 5.25885 5.27328 5.37106
5.41783 5.52524 5.69458 5.89380 6.09981 6.57393 6.84805 7.33350
7.44982 8.89740
Molecular weight = 257.15amu
Principal moments of inertia in cm(-1)
A = 0.014961 B = 0.010936 C = 0.007273
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1871.130385 B = 2559.649114 C = 3848.893961
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.111 3.889
3 N -0.602 5.602
4 C 0.253 3.747
5 C -0.527 4.527
6 H 0.055 0.945
7 C 0.026 3.974
8 N -0.918 5.918
9 Si 0.944 3.056
10 H -0.285 1.285
11 H -0.269 1.269
12 H -0.272 1.272
13 C 0.518 3.482
14 O -0.593 6.593
15 C -0.096 4.096
16 H 0.079 0.921
17 C -0.097 4.097
18 C -0.114 4.114
19 C -0.137 4.137
20 C 0.089 3.911
21 H 0.098 0.902
22 F -0.228 7.228
23 C -0.135 4.135
24 H 0.048 0.952
25 H 0.037 0.963
26 H 0.084 0.916
27 H 0.071 0.929
28 H 0.082 0.918
29 H 0.023 0.977
30 H 0.020 0.980
31 H 0.265 0.735
32 H 0.058 0.942
33 H 0.072 0.928
34 H 0.054 0.946
35 H 0.094 0.906
36 H 0.090 0.910
37 H 0.099 0.901
38 H 0.085 0.915
39 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.442 2.766 -9.644 10.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.011 4.011
3 N -0.331 5.331
4 C 0.132 3.868
5 C -0.566 4.566
6 H 0.073 0.927
7 C -0.175 4.175
8 N -0.558 5.558
9 Si 0.770 3.230
10 H -0.210 1.210
11 H -0.194 1.194
12 H -0.197 1.197
13 C 0.308 3.692
14 O -0.476 6.476
15 C -0.117 4.117
16 H 0.097 0.903
17 C -0.135 4.135
18 C -0.152 4.152
19 C -0.175 4.175
20 C 0.053 3.947
21 H 0.115 0.885
22 F -0.209 7.209
23 C -0.173 4.173
24 H 0.067 0.933
25 H 0.056 0.944
26 H 0.103 0.897
27 H 0.089 0.911
28 H 0.100 0.900
29 H 0.041 0.959
30 H 0.039 0.961
31 H 0.074 0.926
32 H 0.077 0.923
33 H 0.091 0.909
34 H 0.073 0.927
35 H 0.112 0.888
36 H 0.108 0.892
37 H 0.117 0.883
38 H 0.103 0.897
39 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 0.376 2.539 -9.945 10.271
hybrid contribution -0.632 0.322 1.101 1.310
sum -0.257 2.862 -8.843 9.298
Atomic orbital electron populations
1.21978 0.95645 1.02370 1.01026 1.21434 0.95185 0.82386 1.02136
1.48358 1.63100 1.14045 1.07622 1.19125 0.95697 0.92249 0.79755
1.21456 0.99855 1.28629 1.06630 0.92720 1.25546 0.97976 0.97384
0.96562 1.69995 1.27706 1.42639 1.15432 0.85818 0.80123 0.79310
0.77791 1.21032 1.19394 1.19696 1.20834 0.77658 0.88094 0.82638
1.90540 1.53574 1.70594 1.32876 1.21150 0.98421 0.91241 1.00919
0.90321 1.21403 0.98727 0.97854 0.95519 1.21490 0.97780 0.92909
1.03002 1.22147 0.98328 1.00681 0.96329 1.21741 0.92020 0.97139
0.83820 0.88453 1.92796 1.74142 1.96799 1.57202 1.22065 0.97581
0.93588 1.04040 0.93300 0.94369 0.89740 0.91092 0.89979 0.95888
0.96143 0.92582 0.92308 0.90903 0.92689 0.88757 0.89162 0.88279
0.89691 0.90893
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.30 10.21 71.98 0.73 -4.57 16
2 C 0.11 4.12 6.10 86.38 0.53 4.65 16
3 N -0.60 -25.95 2.48 -826.15 -2.05 -28.00 16
4 C 0.25 12.29 5.00 85.63 0.43 12.72 16
5 C -0.53 -27.15 7.52 25.60 0.19 -26.96 16
6 H 0.05 2.85 7.34 -2.91 -0.02 2.83 16
7 C 0.03 1.36 5.46 84.66 0.46 1.83 16
8 N -0.92 -51.47 13.29 21.45 0.28 -51.19 16
9 Si 0.94 42.18 29.54 68.60 2.03 44.21 16
10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16
11 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
13 C 0.52 22.02 6.60 87.66 0.58 22.60 16
14 O -0.59 -26.62 15.94 -3.06 -0.05 -26.67 16
15 C -0.10 -3.65 1.83 -11.54 -0.02 -3.67 16
16 H 0.08 3.38 5.52 -2.39 -0.01 3.37 16
17 C -0.10 -2.98 4.84 30.59 0.15 -2.83 16
18 C -0.11 -2.85 5.80 30.60 0.18 -2.67 16
19 C -0.14 -3.14 5.72 30.59 0.17 -2.97 16
20 C 0.09 2.71 4.12 30.58 0.13 2.84 16
21 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16
22 F -0.23 -8.87 16.05 44.97 0.72 -8.15 16
23 C -0.13 -4.83 4.97 30.58 0.15 -4.68 16
24 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16
25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
26 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16
27 H 0.07 2.53 7.62 -2.39 -0.02 2.51 16
28 H 0.08 2.82 7.79 -2.39 -0.02 2.80 16
29 H 0.02 1.21 5.94 -2.39 -0.01 1.19 16
30 H 0.02 1.05 7.79 -2.39 -0.02 1.03 16
31 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16
32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
33 H 0.07 2.20 7.85 -2.39 -0.02 2.19 16
34 H 0.05 1.53 7.80 -2.39 -0.02 1.52 16
35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16
36 H 0.09 1.73 8.14 -2.38 -0.02 1.72 16
37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16
38 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16
39 H 0.07 3.11 5.66 -2.39 -0.01 3.10 16
Total: -1.00 -61.15 311.68 5.64 -55.52
By element:
Atomic # 1 Polarization: 16.97 SS G_CDS: 1.02 Total: 17.99 kcal
Atomic # 6 Polarization: -7.38 SS G_CDS: 3.68 Total: -3.70 kcal
Atomic # 7 Polarization: -77.43 SS G_CDS: -1.76 Total: -79.19 kcal
Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.67 kcal
Atomic # 9 Polarization: -8.87 SS G_CDS: 0.72 Total: -8.15 kcal
Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal
Total: -61.15 5.64 -55.52 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000424713460.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.010 kcal
(2) G-P(sol) polarization free energy of solvation -61.155 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.165 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.519 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.529 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds