Wall clock time and date at job start Mon Mar 30 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47441 * 2 1 4 4 C 1.46501 * 119.99836 * 265.02214 * 3 2 1 5 5 C 1.50699 * 109.46847 * 264.38233 * 4 3 2 6 6 H 1.07998 * 120.00026 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99854 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00375 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47065 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47208 * 119.99864 * 9 7 5 12 12 H 1.48504 * 109.47226 * 240.00347 * 9 7 5 13 13 C 1.34771 * 119.99988 * 85.01430 * 3 2 1 14 14 O 1.21282 * 120.00254 * 4.09590 * 13 3 2 15 15 C 1.50700 * 120.00017 * 184.09654 * 13 3 2 16 16 H 1.08998 * 109.47351 * 26.86935 * 15 13 3 17 17 C 1.52997 * 109.47357 * 146.87155 * 15 13 3 18 18 C 1.52996 * 109.47397 * 179.97438 * 17 15 13 19 19 C 1.53005 * 109.46813 * 299.99631 * 18 17 15 20 20 C 1.53001 * 109.47019 * 60.00322 * 19 18 17 21 21 H 1.08998 * 109.47219 * 59.99758 * 20 19 18 22 22 F 1.39898 * 109.47010 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.46791 * 299.99543 * 20 19 18 24 24 H 1.08997 * 109.47220 * 184.63275 * 1 2 3 25 25 H 1.09005 * 109.47020 * 304.63435 * 1 2 3 26 26 H 1.09002 * 109.47073 * 64.63048 * 1 2 3 27 27 H 1.09002 * 109.47292 * 240.00203 * 2 1 3 28 28 H 1.09003 * 109.47575 * 119.99750 * 2 1 3 29 29 H 1.09000 * 109.47346 * 24.38748 * 4 3 2 30 30 H 1.08995 * 109.46983 * 144.38457 * 4 3 2 31 31 H 0.96998 * 120.00316 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47283 * 59.99949 * 17 15 13 33 33 H 1.08998 * 109.47291 * 299.99547 * 17 15 13 34 34 H 1.09003 * 109.47573 * 59.99425 * 18 17 15 35 35 H 1.09001 * 109.47596 * 180.02562 * 18 17 15 36 36 H 1.09006 * 109.46857 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.47091 * 299.99730 * 19 18 17 38 38 H 1.08998 * 109.47414 * 300.00096 * 23 20 19 39 39 H 1.09005 * 109.46857 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3664 2.0351 -1.2640 5 6 3.8482 1.9052 -1.5053 6 1 4.4686 1.3871 -0.7891 7 6 4.4118 2.4470 -2.6411 8 7 3.6562 3.0775 -3.5136 9 14 6.2485 2.2854 -2.9407 10 1 6.8692 1.5368 -1.8183 11 1 6.4802 1.5529 -4.2115 12 1 6.8563 3.6374 -3.0306 13 6 2.1474 2.0504 1.1627 14 8 1.9306 1.4863 2.2143 15 6 2.5612 3.4994 1.1563 16 1 2.2589 3.9595 0.2155 17 6 1.8862 4.2278 2.3202 18 6 2.3067 5.6988 2.3141 19 6 3.8263 5.7953 2.4646 20 6 4.5014 5.0671 1.3006 21 1 4.1994 5.5274 0.3599 22 9 5.8907 5.1559 1.4379 23 6 4.0807 3.5960 1.3068 24 1 -0.3633 -1.0243 0.0830 25 1 -0.3633 0.5841 0.8456 26 1 -0.3633 0.4403 -0.9286 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8222 1.5605 -2.0805 30 1 2.0977 3.0902 -1.2132 31 1 4.0527 3.4590 -4.3124 32 1 2.1885 3.7678 3.2611 33 1 0.8037 4.1586 2.2133 34 1 2.0048 6.1591 1.3733 35 1 1.8262 6.2176 3.1436 36 1 4.1260 6.8434 2.4597 37 1 4.1282 5.3351 3.4053 38 1 4.3827 3.1357 2.2475 39 1 4.5613 3.0772 0.4773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424713462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:02 Heat of formation + Delta-G solvation = -117.842600 kcal Electronic energy + Delta-G solvation = -20614.793739 eV Core-core repulsion = 17470.434378 eV Total energy + Delta-G solvation = -3144.359361 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -47.20772 -39.60997 -36.98499 -35.16498 -32.85940 -31.35981 -29.87019 -29.68304 -27.01989 -24.02316 -23.08074 -22.32044 -21.76942 -19.82411 -18.18185 -16.67677 -16.35199 -15.84198 -15.40648 -15.07996 -14.75358 -14.50463 -14.23730 -13.77062 -13.51182 -13.22909 -12.78844 -12.44625 -12.38770 -12.19490 -11.91074 -11.62690 -11.51752 -11.21080 -10.98213 -10.94660 -10.85608 -10.73282 -10.51545 -10.37862 -10.21989 -10.01716 -9.85287 -9.66857 -8.88387 -8.56202 -7.72903 -6.22281 -4.28989 3.21237 3.30530 3.33212 3.40452 3.91537 4.31447 4.74986 4.87168 4.95088 5.11240 5.20084 5.34891 5.41596 5.53042 5.61147 5.67000 5.74145 5.80881 5.83255 5.86667 5.95334 6.11449 6.20410 6.23817 6.26613 6.36515 6.42231 6.50009 6.60641 6.66891 6.77946 6.84958 7.16898 7.53445 7.73745 8.02235 8.32795 8.76635 9.02980 9.38807 10.84070 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.011054 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.006140 B = 2532.414804 C = 4142.379181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.596 5.596 4 C 0.236 3.764 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.280 1.280 13 C 0.524 3.476 14 O -0.576 6.576 15 C -0.096 4.096 16 H 0.101 0.899 17 C -0.106 4.106 18 C -0.114 4.114 19 C -0.144 4.144 20 C 0.095 3.905 21 H 0.086 0.914 22 F -0.218 7.218 23 C -0.136 4.136 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.038 0.962 31 H 0.265 0.735 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 3.253 6.853 8.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.326 5.326 4 C 0.116 3.884 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.195 1.195 11 H -0.209 1.209 12 H -0.206 1.206 13 C 0.312 3.688 14 O -0.457 6.457 15 C -0.117 4.117 16 H 0.119 0.881 17 C -0.143 4.143 18 C -0.151 4.151 19 C -0.182 4.182 20 C 0.059 3.941 21 H 0.104 0.896 22 F -0.199 7.199 23 C -0.174 4.174 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.432 3.043 7.183 8.522 hybrid contribution 1.128 -0.054 -0.523 1.245 sum -2.304 2.989 6.659 7.655 Atomic orbital electron populations 1.22111 0.96917 1.01231 1.01833 1.21234 0.93313 0.84022 1.02352 1.48293 1.62639 1.13146 1.08488 1.19476 0.95975 0.93402 0.79537 1.21503 0.92878 1.36588 1.06408 0.91911 1.24907 0.98256 0.94755 0.95625 1.69923 1.35493 1.36180 1.11143 0.86555 0.85148 0.78222 0.78386 1.19495 1.20850 1.20609 1.20336 0.76531 0.88640 0.83288 1.90569 1.53350 1.70244 1.31526 1.21128 0.96164 0.93486 1.00933 0.88127 1.21456 0.99867 0.94277 0.98748 1.21461 0.94532 0.96890 1.02259 1.22144 0.96367 1.00736 0.98940 1.21556 0.75159 0.97635 0.99782 0.89587 1.92774 1.32347 1.97429 1.97362 1.22108 0.94851 0.95511 1.04927 0.92466 0.92802 0.92705 0.90498 0.91360 0.94554 0.94428 0.92539 0.90948 0.91882 0.91471 0.91420 0.91267 0.91003 0.91443 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.20 37.16 0.38 -2.17 16 2 C 0.11 2.10 6.09 -4.04 -0.02 2.07 16 3 N -0.60 -12.36 2.48 -175.06 -0.43 -12.80 16 4 C 0.24 5.40 4.94 -5.19 -0.03 5.37 16 5 C -0.54 -13.38 7.50 -34.44 -0.26 -13.64 16 6 H 0.06 1.62 7.38 -52.49 -0.39 1.24 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -23.77 13.29 55.43 0.74 -23.03 16 9 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 13 C 0.52 10.81 6.61 -10.99 -0.07 10.74 16 14 O -0.58 -12.92 15.87 5.56 0.09 -12.83 16 15 C -0.10 -1.73 1.96 -91.77 -0.18 -1.91 16 16 H 0.10 1.87 5.86 -51.93 -0.30 1.56 16 17 C -0.11 -1.59 4.84 -26.73 -0.13 -1.72 16 18 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 19 C -0.14 -1.90 5.66 -26.73 -0.15 -2.05 16 20 C 0.09 1.55 3.87 -26.73 -0.10 1.45 16 21 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 22 F -0.22 -3.97 17.08 2.25 0.04 -3.93 16 23 C -0.14 -2.50 4.92 -26.73 -0.13 -2.63 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 28 H 0.07 1.28 7.52 -51.93 -0.39 0.89 16 29 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 30 H 0.04 0.88 5.92 -51.93 -0.31 0.58 16 31 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.07 1.15 7.85 -51.93 -0.41 0.74 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.11 2.29 5.65 -51.93 -0.29 2.00 16 LS Contribution 313.53 15.07 4.72 4.72 Total: -1.00 -27.77 313.53 -7.11 -34.88 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.29 Total: 1.99 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.95 Total: -4.42 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.30 Total: -35.83 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.77 -7.11 -34.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424713462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.962 kcal (2) G-P(sol) polarization free energy of solvation -27.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds