Wall clock time and date at job start Mon Mar 30 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47441 * 2 1 4 4 C 1.46501 * 119.99836 * 265.02214 * 3 2 1 5 5 C 1.50699 * 109.46847 * 264.38233 * 4 3 2 6 6 H 1.07998 * 120.00026 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99854 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00375 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00068 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47065 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47208 * 119.99864 * 9 7 5 12 12 H 1.48504 * 109.47226 * 240.00347 * 9 7 5 13 13 C 1.34771 * 119.99988 * 85.01430 * 3 2 1 14 14 O 1.21282 * 120.00254 * 4.09590 * 13 3 2 15 15 C 1.50700 * 120.00017 * 184.09654 * 13 3 2 16 16 H 1.08998 * 109.47351 * 26.86935 * 15 13 3 17 17 C 1.52997 * 109.47357 * 146.87155 * 15 13 3 18 18 C 1.52996 * 109.47397 * 179.97438 * 17 15 13 19 19 C 1.53005 * 109.46813 * 299.99631 * 18 17 15 20 20 C 1.53001 * 109.47019 * 60.00322 * 19 18 17 21 21 H 1.08998 * 109.47219 * 59.99758 * 20 19 18 22 22 F 1.39898 * 109.47010 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.46791 * 299.99543 * 20 19 18 24 24 H 1.08997 * 109.47220 * 184.63275 * 1 2 3 25 25 H 1.09005 * 109.47020 * 304.63435 * 1 2 3 26 26 H 1.09002 * 109.47073 * 64.63048 * 1 2 3 27 27 H 1.09002 * 109.47292 * 240.00203 * 2 1 3 28 28 H 1.09003 * 109.47575 * 119.99750 * 2 1 3 29 29 H 1.09000 * 109.47346 * 24.38748 * 4 3 2 30 30 H 1.08995 * 109.46983 * 144.38457 * 4 3 2 31 31 H 0.96998 * 120.00316 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47283 * 59.99949 * 17 15 13 33 33 H 1.08998 * 109.47291 * 299.99547 * 17 15 13 34 34 H 1.09003 * 109.47573 * 59.99425 * 18 17 15 35 35 H 1.09001 * 109.47596 * 180.02562 * 18 17 15 36 36 H 1.09006 * 109.46857 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.47091 * 299.99730 * 19 18 17 38 38 H 1.08998 * 109.47414 * 300.00096 * 23 20 19 39 39 H 1.09005 * 109.46857 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3664 2.0351 -1.2640 5 6 3.8482 1.9052 -1.5053 6 1 4.4686 1.3871 -0.7891 7 6 4.4118 2.4470 -2.6411 8 7 3.6562 3.0775 -3.5136 9 14 6.2485 2.2854 -2.9407 10 1 6.8692 1.5368 -1.8183 11 1 6.4802 1.5529 -4.2115 12 1 6.8563 3.6374 -3.0306 13 6 2.1474 2.0504 1.1627 14 8 1.9306 1.4863 2.2143 15 6 2.5612 3.4994 1.1563 16 1 2.2589 3.9595 0.2155 17 6 1.8862 4.2278 2.3202 18 6 2.3067 5.6988 2.3141 19 6 3.8263 5.7953 2.4646 20 6 4.5014 5.0671 1.3006 21 1 4.1994 5.5274 0.3599 22 9 5.8907 5.1559 1.4379 23 6 4.0807 3.5960 1.3068 24 1 -0.3633 -1.0243 0.0830 25 1 -0.3633 0.5841 0.8456 26 1 -0.3633 0.4403 -0.9286 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8222 1.5605 -2.0805 30 1 2.0977 3.0902 -1.2132 31 1 4.0527 3.4590 -4.3124 32 1 2.1885 3.7678 3.2611 33 1 0.8037 4.1586 2.2133 34 1 2.0048 6.1591 1.3733 35 1 1.8262 6.2176 3.1436 36 1 4.1260 6.8434 2.4597 37 1 4.1282 5.3351 3.4053 38 1 4.3827 3.1357 2.2475 39 1 4.5613 3.0772 0.4773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424713462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:01 Heat of formation + Delta-G solvation = -131.738246 kcal Electronic energy + Delta-G solvation = -20615.396300 eV Core-core repulsion = 17470.434378 eV Total energy + Delta-G solvation = -3144.961922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.59896 -41.19776 -38.32435 -36.89389 -34.74524 -32.80078 -31.25480 -31.00285 -28.88646 -25.42439 -24.97283 -23.58884 -23.13823 -21.08665 -19.81929 -18.55904 -18.02186 -17.38900 -16.80450 -16.54470 -16.42890 -15.98443 -15.68812 -15.23041 -14.87343 -14.60280 -14.39738 -14.18060 -13.73309 -13.63107 -13.32257 -13.24944 -13.13192 -12.75082 -12.68148 -12.51059 -12.23759 -12.15409 -12.00289 -11.77972 -11.72005 -11.56023 -11.47731 -11.14178 -10.62225 -10.40697 -9.46726 -8.21510 -6.32947 1.36469 1.41983 1.49949 1.73595 2.29781 2.43612 3.09136 3.49335 3.56174 3.71799 3.89269 3.97259 4.15393 4.19842 4.31355 4.37144 4.41426 4.42619 4.53172 4.60991 4.69342 4.81569 4.95664 4.98433 5.01555 5.08815 5.10952 5.18637 5.22662 5.23488 5.29975 5.35013 5.48438 5.66220 5.87606 6.06466 6.56008 6.82249 7.30778 7.41990 8.84040 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.011054 C = 0.006758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.006140 B = 2532.414804 C = 4142.379181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.106 3.894 3 N -0.601 5.601 4 C 0.251 3.749 5 C -0.535 4.535 6 H 0.049 0.951 7 C 0.032 3.968 8 N -0.914 5.914 9 Si 0.939 3.061 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.278 1.278 13 C 0.517 3.483 14 O -0.595 6.595 15 C -0.092 4.092 16 H 0.094 0.906 17 C -0.100 4.100 18 C -0.106 4.106 19 C -0.137 4.137 20 C 0.092 3.908 21 H 0.086 0.914 22 F -0.230 7.230 23 C -0.131 4.131 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.268 0.732 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 4.166 7.477 9.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 N -0.330 5.330 4 C 0.131 3.869 5 C -0.573 4.573 6 H 0.067 0.933 7 C -0.169 4.169 8 N -0.553 5.553 9 Si 0.765 3.235 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.203 1.203 13 C 0.307 3.693 14 O -0.478 6.478 15 C -0.113 4.113 16 H 0.112 0.888 17 C -0.138 4.138 18 C -0.144 4.144 19 C -0.174 4.174 20 C 0.056 3.944 21 H 0.104 0.896 22 F -0.211 7.211 23 C -0.170 4.170 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.791 3.946 7.806 9.533 hybrid contribution 1.239 -0.413 -0.710 1.487 sum -2.551 3.533 7.096 8.327 Atomic orbital electron populations 1.22004 0.94537 1.02961 1.01382 1.21425 0.95296 0.82802 1.02123 1.48354 1.62706 1.14072 1.07907 1.19146 0.94634 0.93121 0.80023 1.21580 0.93792 1.36001 1.05967 0.93296 1.25442 1.01245 0.94678 0.95574 1.69982 1.36744 1.36984 1.11587 0.85785 0.81499 0.78097 0.78074 1.19986 1.20279 1.20346 1.20830 0.75978 0.89702 0.82820 1.90548 1.54290 1.70985 1.31962 1.21139 0.96055 0.92014 1.02081 0.88823 1.21448 0.99874 0.95812 0.96704 1.21463 0.93998 0.94924 1.03993 1.22120 0.96509 1.01544 0.97247 1.21678 0.74713 0.96386 1.01604 0.89592 1.92750 1.33442 1.97379 1.97483 1.21993 0.94909 0.96966 1.03107 0.89544 0.93830 0.92564 0.90349 0.91918 0.95779 0.94903 0.92308 0.91749 0.91318 0.90722 0.88378 0.88923 0.90733 0.91935 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 10.20 71.98 0.73 -3.82 16 2 C 0.11 3.89 6.09 86.38 0.53 4.41 16 3 N -0.60 -25.16 2.48 -826.15 -2.05 -27.21 16 4 C 0.25 11.66 4.94 85.63 0.42 12.08 16 5 C -0.53 -27.11 7.50 25.60 0.19 -26.91 16 6 H 0.05 2.59 7.38 -2.91 -0.02 2.57 16 7 C 0.03 1.63 5.46 84.65 0.46 2.09 16 8 N -0.91 -48.84 13.29 21.45 0.28 -48.55 16 9 Si 0.94 41.98 29.54 68.60 2.03 44.01 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 C 0.52 21.47 6.61 87.66 0.58 22.05 16 14 O -0.59 -26.74 15.87 -3.04 -0.05 -26.78 16 15 C -0.09 -3.28 1.96 -11.54 -0.02 -3.30 16 16 H 0.09 3.47 5.86 -2.39 -0.01 3.46 16 17 C -0.10 -2.87 4.84 30.59 0.15 -2.72 16 18 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 19 C -0.14 -3.24 5.66 30.60 0.17 -3.06 16 20 C 0.09 2.92 3.87 30.60 0.12 3.04 16 21 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 22 F -0.23 -8.17 17.08 44.97 0.77 -7.40 16 23 C -0.13 -4.85 4.92 30.60 0.15 -4.70 16 24 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.08 2.80 8.03 -2.39 -0.02 2.78 16 28 H 0.06 2.35 7.52 -2.39 -0.02 2.33 16 29 H 0.02 1.18 8.03 -2.39 -0.02 1.16 16 30 H 0.03 1.57 5.92 -2.39 -0.01 1.55 16 31 H 0.27 13.62 8.31 -92.71 -0.77 12.84 16 32 H 0.06 1.95 7.85 -2.38 -0.02 1.93 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.07 3.24 5.65 -2.38 -0.01 3.23 16 Total: -1.00 -58.74 313.53 5.66 -53.07 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.02 Total: 15.86 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 3.67 Total: -2.99 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -1.76 Total: -75.77 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 0.77 Total: -7.40 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -58.74 5.66 -53.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424713462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.667 kcal (2) G-P(sol) polarization free energy of solvation -58.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds