Wall clock time and date at job start Mon Mar 30 2020 06:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46939 * 2 1 4 4 C 1.53004 * 109.47138 * 119.99935 * 2 1 3 5 5 C 1.50696 * 109.47102 * 300.00202 * 4 2 1 6 6 H 1.07998 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00105 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99915 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47131 * 270.00042 * 9 7 5 11 11 H 1.48501 * 109.46906 * 29.99904 * 9 7 5 12 12 H 1.48502 * 109.46966 * 150.00123 * 9 7 5 13 13 C 1.53004 * 109.47239 * 240.00420 * 2 1 3 14 14 N 1.46893 * 109.46898 * 54.05553 * 13 2 1 15 15 C 1.46849 * 111.00108 * 85.47469 * 14 13 2 16 16 C 1.53039 * 109.52587 * 185.83620 * 15 14 13 17 17 C 1.53120 * 109.27555 * 300.81874 * 16 15 14 18 18 C 1.53116 * 109.16255 * 57.65140 * 17 16 15 19 19 C 1.53001 * 109.50142 * 182.36426 * 18 17 16 20 20 F 1.39901 * 109.50344 * 62.28758 * 18 17 16 21 21 C 1.46854 * 110.99878 * 209.67675 * 14 13 2 22 22 H 1.08998 * 109.47116 * 299.99786 * 1 2 3 23 23 H 1.09002 * 109.47001 * 59.99898 * 1 2 3 24 24 H 1.09003 * 109.46933 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47146 * 194.29416 * 3 2 1 26 26 H 1.08994 * 109.47170 * 314.30379 * 3 2 1 27 27 H 1.08999 * 109.46843 * 74.29890 * 3 2 1 28 28 H 1.08998 * 109.46429 * 180.02562 * 4 2 1 29 29 H 1.08999 * 109.46482 * 60.00677 * 4 2 1 30 30 H 0.96996 * 119.99671 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46847 * 174.06093 * 13 2 1 32 32 H 1.09006 * 109.46637 * 294.05776 * 13 2 1 33 33 H 1.09009 * 109.45852 * 305.84915 * 15 14 13 34 34 H 1.08997 * 109.46619 * 65.81489 * 15 14 13 35 35 H 1.09008 * 109.50012 * 60.75624 * 16 15 14 36 36 H 1.08999 * 109.50358 * 180.87543 * 16 15 14 37 37 H 1.08997 * 109.51649 * 177.55904 * 17 16 15 38 38 H 1.09005 * 109.51924 * 297.74668 * 17 16 15 39 39 H 1.08999 * 109.46982 * 60.00381 * 19 18 17 40 40 H 1.09002 * 109.46909 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47079 * 300.00268 * 19 18 17 42 42 H 1.09008 * 109.45919 * 294.18174 * 21 14 13 43 43 H 1.09003 * 109.46003 * 54.14292 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0109 2.4797 6 1 0.9164 0.8669 2.3806 7 6 1.8703 -0.4823 3.7320 8 7 1.4324 0.1380 4.8058 9 14 2.9444 -2.0011 3.9033 10 1 2.0859 -3.2119 3.9481 11 1 3.8651 -2.0897 2.7416 12 1 3.7358 -1.9088 5.1565 13 6 2.0401 -0.7212 -1.2493 14 7 1.4368 -0.1164 -2.4443 15 6 2.2099 1.0493 -2.8915 16 6 1.4762 1.7379 -4.0447 17 6 1.3017 0.7451 -5.1973 18 6 0.5358 -0.4811 -4.6928 19 6 0.4083 -1.5043 -5.8232 20 9 -0.7395 -0.0931 -4.2681 21 6 1.2967 -1.1052 -3.5209 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.0999 1.4532 -0.2537 26 1 1.4844 2.0243 -0.7354 27 1 1.8989 1.8778 0.9893 28 1 3.1300 -0.7208 1.2494 29 1 1.6767 -1.7489 1.2491 30 1 1.6661 -0.1939 5.6867 31 1 3.1249 -0.6300 -1.3040 32 1 1.7661 -1.7750 -1.1977 33 1 2.3231 1.7493 -2.0636 34 1 3.1939 0.7246 -3.2295 35 1 0.4974 2.0751 -3.7035 36 1 2.0579 2.5939 -4.3866 37 1 0.7414 1.2182 -6.0037 38 1 2.2808 0.4373 -5.5643 39 1 1.4021 -1.8073 -6.1527 40 1 -0.1374 -2.3767 -5.4636 41 1 -0.1310 -1.0576 -6.6585 42 1 2.2851 -1.4199 -3.8560 43 1 0.7467 -1.9703 -3.1502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449351475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:14 Heat of formation + Delta-G solvation = -63.377775 kcal Electronic energy + Delta-G solvation = -20760.339655 eV Core-core repulsion = 17754.175160 eV Total energy + Delta-G solvation = -3006.164495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.47585 -39.05400 -36.38717 -33.30704 -32.06165 -31.85586 -27.88200 -27.06551 -26.42718 -25.94912 -23.50962 -22.18655 -21.34594 -19.68198 -17.85493 -16.73443 -16.05995 -15.71725 -15.39334 -14.97797 -14.74605 -14.28080 -13.79280 -13.45650 -13.30095 -12.91905 -12.70388 -12.60690 -12.46113 -12.35585 -12.18153 -11.93002 -11.88128 -11.34419 -11.02909 -10.89675 -10.81242 -10.77039 -10.52503 -10.32538 -10.27022 -10.06736 -9.72090 -9.61021 -9.11889 -8.88268 -8.46278 -7.99427 -5.96541 -3.92179 3.34159 3.41619 3.44852 3.95890 4.34405 4.48547 4.51084 4.61172 4.69825 4.99976 5.17997 5.27222 5.36204 5.37231 5.44498 5.49667 5.51425 5.59731 5.74042 5.78268 5.81195 5.90567 5.97354 6.01084 6.11881 6.18799 6.30106 6.31726 6.51470 6.71405 6.77765 6.89713 7.16273 7.22419 7.26735 7.30292 7.39681 7.43520 7.57271 7.89674 8.64255 9.10043 9.66710 11.16650 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.036684 B = 0.004994 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.095155 B = 5604.909486 C = 5772.213431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.042 4.042 3 C -0.135 4.135 4 C -0.005 4.005 5 C -0.505 4.505 6 H 0.079 0.921 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.290 1.290 13 C 0.064 3.936 14 N -0.524 5.524 15 C 0.035 3.965 16 C -0.118 4.118 17 C -0.139 4.139 18 C 0.124 3.876 19 C -0.172 4.172 20 F -0.198 7.198 21 C 0.036 3.964 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.261 0.739 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.042 0.958 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -0.919 -21.309 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.043 4.043 3 C -0.192 4.192 4 C -0.043 4.043 5 C -0.543 4.543 6 H 0.097 0.903 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.192 1.192 12 H -0.216 1.216 13 C -0.063 4.063 14 N -0.247 5.247 15 C -0.092 4.092 16 C -0.156 4.156 17 C -0.177 4.177 18 C 0.105 3.895 19 C -0.230 4.230 20 F -0.179 7.179 21 C -0.092 4.092 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.044 0.956 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.928 -0.756 -20.975 21.009 hybrid contribution 1.386 -1.243 0.033 1.862 sum 2.315 -1.999 -20.942 21.164 Atomic orbital electron populations 1.21586 0.94443 1.00406 1.00824 1.20354 0.96292 0.95014 0.92599 1.22013 0.98314 0.96595 1.02286 1.19640 0.95758 0.95429 0.93470 1.21143 1.31285 1.13195 0.88652 0.90344 1.25014 0.95833 0.96707 0.96035 1.69911 1.46260 1.40618 0.97800 0.86856 0.81298 0.84132 0.77399 1.20487 1.19236 1.21612 1.22372 0.95951 0.98073 0.89882 1.61827 1.51525 1.07022 1.04371 1.22624 0.93673 0.94179 0.98756 1.21581 1.02131 0.97371 0.94523 1.22169 1.00589 0.95977 0.98961 1.20870 0.80001 0.94765 0.93825 1.22350 1.03203 0.99337 0.98149 1.92864 1.40998 1.92436 1.91574 1.22672 0.98952 0.95626 0.91994 0.92376 0.93180 0.94639 0.94644 0.93544 0.90921 0.97042 0.97284 0.92935 0.94858 0.91788 0.88045 0.95607 0.90432 0.91394 0.90994 0.90831 0.90992 0.91287 0.91377 0.93946 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.31 7.95 37.16 0.30 -2.02 16 2 C -0.04 -0.83 0.61 -154.50 -0.09 -0.92 16 3 C -0.14 -2.54 6.88 37.16 0.26 -2.29 16 4 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 5 C -0.50 -14.05 8.00 -34.44 -0.28 -14.33 16 6 H 0.08 2.34 6.03 -52.49 -0.32 2.02 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -27.97 13.96 55.43 0.77 -27.19 16 9 Si 0.88 21.90 27.47 -169.99 -4.67 17.24 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 13 C 0.06 1.07 4.23 -3.83 -0.02 1.05 16 14 N -0.52 -7.65 3.43 -234.66 -0.80 -8.46 16 15 C 0.04 0.46 4.96 -3.83 -0.02 0.44 16 16 C -0.12 -1.33 5.97 -26.65 -0.16 -1.48 16 17 C -0.14 -1.37 5.07 -26.61 -0.13 -1.51 16 18 C 0.12 1.40 1.27 -90.54 -0.11 1.28 16 19 C -0.17 -1.46 8.94 37.16 0.33 -1.13 16 20 F -0.20 -2.88 16.34 2.25 0.04 -2.84 16 21 C 0.04 0.45 4.41 -3.83 -0.02 0.44 16 22 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 23 H 0.05 0.95 7.45 -51.93 -0.39 0.56 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.03 0.62 7.65 -51.93 -0.40 0.22 16 26 H 0.05 0.79 6.24 -51.93 -0.32 0.46 16 27 H 0.07 1.57 6.28 -51.93 -0.33 1.24 16 28 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 29 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.03 0.54 7.77 -51.93 -0.40 0.14 16 32 H 0.06 1.05 7.63 -51.93 -0.40 0.66 16 33 H 0.10 1.42 4.03 -51.92 -0.21 1.21 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 1.00 7.91 -51.92 -0.41 0.58 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 43 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -30.25 320.68 -7.62 -37.87 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.66 Total: -2.53 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.13 Total: -18.91 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.03 Total: -35.65 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.25 -7.62 -37.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449351475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.508 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds