Wall clock time and date at job start Mon Mar 30 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46939 * 2 1 4 4 C 1.53004 * 109.47138 * 119.99935 * 2 1 3 5 5 C 1.50696 * 109.47102 * 300.00202 * 4 2 1 6 6 H 1.07998 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99850 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00105 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99915 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47131 * 270.00042 * 9 7 5 11 11 H 1.48501 * 109.46906 * 29.99904 * 9 7 5 12 12 H 1.48502 * 109.46966 * 150.00123 * 9 7 5 13 13 C 1.53004 * 109.47239 * 240.00420 * 2 1 3 14 14 N 1.46893 * 109.46898 * 54.05553 * 13 2 1 15 15 C 1.46849 * 111.00108 * 85.47469 * 14 13 2 16 16 C 1.53039 * 109.52587 * 185.83620 * 15 14 13 17 17 C 1.53120 * 109.27555 * 300.81874 * 16 15 14 18 18 C 1.53116 * 109.16255 * 57.65140 * 17 16 15 19 19 C 1.53001 * 109.50142 * 182.36426 * 18 17 16 20 20 F 1.39901 * 109.50344 * 62.28758 * 18 17 16 21 21 C 1.46854 * 110.99878 * 209.67675 * 14 13 2 22 22 H 1.08998 * 109.47116 * 299.99786 * 1 2 3 23 23 H 1.09002 * 109.47001 * 59.99898 * 1 2 3 24 24 H 1.09003 * 109.46933 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47146 * 194.29416 * 3 2 1 26 26 H 1.08994 * 109.47170 * 314.30379 * 3 2 1 27 27 H 1.08999 * 109.46843 * 74.29890 * 3 2 1 28 28 H 1.08998 * 109.46429 * 180.02562 * 4 2 1 29 29 H 1.08999 * 109.46482 * 60.00677 * 4 2 1 30 30 H 0.96996 * 119.99671 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.46847 * 174.06093 * 13 2 1 32 32 H 1.09006 * 109.46637 * 294.05776 * 13 2 1 33 33 H 1.09009 * 109.45852 * 305.84915 * 15 14 13 34 34 H 1.08997 * 109.46619 * 65.81489 * 15 14 13 35 35 H 1.09008 * 109.50012 * 60.75624 * 16 15 14 36 36 H 1.08999 * 109.50358 * 180.87543 * 16 15 14 37 37 H 1.08997 * 109.51649 * 177.55904 * 17 16 15 38 38 H 1.09005 * 109.51924 * 297.74668 * 17 16 15 39 39 H 1.08999 * 109.46982 * 60.00381 * 19 18 17 40 40 H 1.09002 * 109.46909 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47079 * 300.00268 * 19 18 17 42 42 H 1.09008 * 109.45919 * 294.18174 * 21 14 13 43 43 H 1.09003 * 109.46003 * 54.14292 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5377 -0.0109 2.4797 6 1 0.9164 0.8669 2.3806 7 6 1.8703 -0.4823 3.7320 8 7 1.4324 0.1380 4.8058 9 14 2.9444 -2.0011 3.9033 10 1 2.0859 -3.2119 3.9481 11 1 3.8651 -2.0897 2.7416 12 1 3.7358 -1.9088 5.1565 13 6 2.0401 -0.7212 -1.2493 14 7 1.4368 -0.1164 -2.4443 15 6 2.2099 1.0493 -2.8915 16 6 1.4762 1.7379 -4.0447 17 6 1.3017 0.7451 -5.1973 18 6 0.5358 -0.4811 -4.6928 19 6 0.4083 -1.5043 -5.8232 20 9 -0.7395 -0.0931 -4.2681 21 6 1.2967 -1.1052 -3.5209 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.0999 1.4532 -0.2537 26 1 1.4844 2.0243 -0.7354 27 1 1.8989 1.8778 0.9893 28 1 3.1300 -0.7208 1.2494 29 1 1.6767 -1.7489 1.2491 30 1 1.6661 -0.1939 5.6867 31 1 3.1249 -0.6300 -1.3040 32 1 1.7661 -1.7750 -1.1977 33 1 2.3231 1.7493 -2.0636 34 1 3.1939 0.7246 -3.2295 35 1 0.4974 2.0751 -3.7035 36 1 2.0579 2.5939 -4.3866 37 1 0.7414 1.2182 -6.0037 38 1 2.2808 0.4373 -5.5643 39 1 1.4021 -1.8073 -6.1527 40 1 -0.1374 -2.3767 -5.4636 41 1 -0.1310 -1.0576 -6.6585 42 1 2.2851 -1.4199 -3.8560 43 1 0.7467 -1.9703 -3.1502 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449351475.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:13 Heat of formation + Delta-G solvation = -80.668146 kcal Electronic energy + Delta-G solvation = -20761.089422 eV Core-core repulsion = 17754.175160 eV Total energy + Delta-G solvation = -3006.914262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.44819 -40.23353 -37.77281 -34.80957 -33.69989 -32.82855 -29.74408 -28.34254 -27.66051 -27.23101 -24.95552 -23.54547 -22.49437 -20.58235 -19.46691 -18.85330 -17.06196 -16.82560 -16.30771 -16.21459 -16.06077 -15.75710 -15.10497 -14.97920 -14.70704 -14.27284 -14.16554 -13.93682 -13.49391 -13.41274 -13.28358 -13.05032 -12.93470 -12.75872 -12.72399 -12.35476 -12.30152 -12.05743 -11.97778 -11.82345 -11.66807 -11.44452 -11.27704 -11.07854 -10.89124 -10.68851 -10.60192 -9.10041 -8.20503 -6.20711 1.36565 1.37685 1.49025 2.40438 2.91010 3.14404 3.53749 3.70091 3.78458 3.88368 4.06373 4.17062 4.22605 4.34409 4.38147 4.55062 4.61618 4.61714 4.68012 4.74712 4.79183 4.84040 4.92257 4.94508 5.01912 5.04544 5.08955 5.12865 5.20957 5.23363 5.27429 5.40785 5.45648 5.47890 5.56769 5.65922 5.77092 5.84722 6.17320 6.29013 6.44297 6.86405 7.41384 8.95947 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.036684 B = 0.004994 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.095155 B = 5604.909486 C = 5772.213431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.043 4.043 3 C -0.125 4.125 4 C -0.002 4.002 5 C -0.503 4.503 6 H 0.042 0.958 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.248 1.248 12 H -0.288 1.288 13 C 0.076 3.924 14 N -0.539 5.539 15 C 0.034 3.966 16 C -0.116 4.116 17 C -0.135 4.135 18 C 0.115 3.885 19 C -0.167 4.167 20 F -0.222 7.222 21 C 0.035 3.965 22 H 0.024 0.976 23 H 0.060 0.940 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.069 -2.244 -24.185 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.044 4.044 3 C -0.181 4.181 4 C -0.040 4.040 5 C -0.541 4.541 6 H 0.060 0.940 7 C -0.195 4.195 8 N -0.598 5.598 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.171 1.171 12 H -0.214 1.214 13 C -0.052 4.052 14 N -0.263 5.263 15 C -0.093 4.093 16 C -0.154 4.154 17 C -0.173 4.173 18 C 0.096 3.904 19 C -0.225 4.225 20 F -0.203 7.203 21 C -0.094 4.094 22 H 0.043 0.957 23 H 0.079 0.921 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.583 -2.080 -23.884 24.113 hybrid contribution 0.799 -0.741 0.906 1.417 sum 3.382 -2.821 -22.978 23.396 Atomic orbital electron populations 1.21448 0.95095 0.99874 0.99617 1.20302 0.95688 0.95470 0.92890 1.21901 0.99581 0.96127 1.00535 1.19590 0.95721 0.95297 0.93394 1.21422 1.30025 1.12101 0.90560 0.93986 1.25934 0.97623 1.00264 0.95687 1.70072 1.48397 1.42858 0.98448 0.85778 0.79675 0.79893 0.77980 1.19700 1.17112 1.21424 1.22092 0.96273 0.97607 0.89244 1.61706 1.51904 1.08024 1.04700 1.22632 0.94434 0.93364 0.98918 1.21560 1.00997 0.98344 0.94478 1.22177 1.01626 0.94961 0.98504 1.21181 0.78868 0.96150 0.94167 1.22321 1.04594 0.98368 0.97198 1.92821 1.42764 1.92761 1.91938 1.22739 1.00079 0.94887 0.91651 0.95682 0.92073 0.94785 0.93089 0.91845 0.94720 0.96680 0.97100 0.92913 0.94012 0.91579 0.89449 0.94210 0.92664 0.89383 0.89949 0.88692 0.88911 0.91600 0.90607 0.91952 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.19 7.95 71.98 0.57 -3.62 16 2 C -0.04 -1.67 0.61 -52.18 -0.03 -1.70 16 3 C -0.12 -4.68 6.88 71.98 0.50 -4.18 16 4 C 0.00 -0.10 3.11 29.85 0.09 -0.01 16 5 C -0.50 -28.79 8.00 25.60 0.20 -28.58 16 6 H 0.04 2.66 6.03 -2.91 -0.02 2.64 16 7 C 0.00 0.03 5.47 84.65 0.46 0.49 16 8 N -0.96 -60.89 13.96 21.45 0.30 -60.59 16 9 Si 0.94 45.06 27.47 68.60 1.88 46.94 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 12 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 13 C 0.08 2.35 4.23 86.31 0.37 2.71 16 14 N -0.54 -14.57 3.43 -896.31 -3.07 -17.64 16 15 C 0.03 0.79 4.96 86.33 0.43 1.22 16 16 C -0.12 -2.30 5.97 30.65 0.18 -2.12 16 17 C -0.14 -2.20 5.07 30.67 0.16 -2.04 16 18 C 0.11 2.27 1.27 -10.74 -0.01 2.25 16 19 C -0.17 -2.30 8.94 71.98 0.64 -1.65 16 20 F -0.22 -6.15 16.34 44.97 0.73 -5.42 16 21 C 0.03 0.76 4.41 86.32 0.38 1.14 16 22 H 0.02 1.14 6.62 -2.39 -0.02 1.13 16 23 H 0.06 2.32 7.45 -2.39 -0.02 2.30 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.72 7.65 -2.39 -0.02 1.70 16 26 H 0.06 2.14 6.24 -2.39 -0.01 2.12 16 27 H 0.03 1.54 6.28 -2.39 -0.02 1.53 16 28 H 0.01 0.69 7.20 -2.39 -0.02 0.68 16 29 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 30 H 0.26 15.69 8.31 -92.71 -0.77 14.91 16 31 H 0.04 1.23 7.77 -2.38 -0.02 1.21 16 32 H 0.07 2.02 7.63 -2.38 -0.02 2.00 16 33 H 0.09 2.26 4.03 -2.38 -0.01 2.25 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 1.34 7.91 -2.38 -0.02 1.32 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.08 1.76 7.90 -2.39 -0.02 1.75 16 Total: -1.00 -66.89 320.68 4.69 -62.21 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.90 Total: 10.59 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 3.94 Total: -36.09 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.77 Total: -78.23 kcal Atomic # 9 Polarization: -6.15 SS G_CDS: 0.73 Total: -5.42 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -66.89 4.69 -62.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449351475.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.462 kcal (2) G-P(sol) polarization free energy of solvation -66.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds