Wall clock time and date at job start Mon Mar 30 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38564 * 119.86844 * 2 1 4 4 C 1.38884 * 120.48748 * 180.02562 * 3 2 1 5 5 F 1.35102 * 119.88302 * 179.97438 * 4 3 2 6 6 C 1.37817 * 120.22836 * 359.97438 * 4 3 2 7 7 C 1.40677 * 119.73610 * 0.02562 * 6 4 3 8 8 C 1.41343 * 120.24069 * 180.02562 * 7 6 4 9 9 H 1.07995 * 119.99778 * 149.70750 * 8 7 6 10 10 C 1.39936 * 119.99961 * 329.70106 * 8 7 6 11 11 N 1.30830 * 120.00017 * 162.12835 * 10 8 7 12 12 Si 1.86803 * 120.00136 * 342.12974 * 10 8 7 13 13 H 1.48495 * 109.47398 * 95.38951 * 12 10 8 14 14 H 1.48499 * 109.47109 * 215.38817 * 12 10 8 15 15 H 1.48500 * 109.47037 * 335.38593 * 12 10 8 16 16 C 1.37745 * 119.87007 * 180.02562 * 2 1 3 17 17 Br 1.89100 * 120.11496 * 0.02562 * 16 2 1 18 18 H 1.08997 * 109.46825 * 90.00051 * 1 2 3 19 19 H 1.08996 * 109.47561 * 210.00505 * 1 2 3 20 20 H 1.09005 * 109.46954 * 330.00536 * 1 2 3 21 21 H 1.07990 * 119.75505 * 359.73979 * 3 2 1 22 22 H 1.08000 * 120.13430 * 180.02562 * 6 4 3 23 23 H 0.96999 * 120.00251 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2016 0.0000 4 6 3.5858 1.2166 -0.0005 5 9 4.2462 2.3952 -0.0011 6 6 4.2925 0.0334 -0.0005 7 6 3.6015 -1.1920 -0.0005 8 6 4.3155 -2.4118 0.0000 9 1 3.8912 -3.2857 0.4718 10 6 5.5722 -2.4872 -0.6109 11 7 6.3809 -3.4748 -0.3240 12 14 6.0953 -1.1777 -1.8361 13 1 6.8984 -0.1408 -1.1398 14 1 6.9134 -1.8007 -2.9074 15 1 4.8898 -0.5506 -2.4352 16 6 2.1930 -1.1945 -0.0005 17 35 1.2471 -2.8319 -0.0020 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3633 0.8901 0.5138 21 1 1.6510 2.1332 -0.0043 22 1 5.3724 0.0468 -0.0005 23 1 7.2519 -3.5273 -0.7477 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575689446.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:42 Heat of formation + Delta-G solvation = -41.642601 kcal Electronic energy + Delta-G solvation = -11897.063485 eV Core-core repulsion = 9477.071937 eV Total energy + Delta-G solvation = -2419.991548 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.06918 -38.01711 -34.11753 -31.96560 -30.98823 -28.55301 -26.12773 -25.40418 -20.93170 -20.72572 -17.50806 -16.28669 -15.45887 -15.03361 -14.81166 -14.62018 -13.31885 -13.12974 -12.74987 -12.64074 -12.17426 -11.56910 -11.50234 -11.02385 -10.88040 -10.58863 -10.24416 -9.98502 -9.58998 -9.38350 -8.90135 -7.84660 -7.50573 -7.18265 -4.78273 2.11580 2.31004 2.92899 3.00317 3.08528 3.19648 3.82484 4.14242 5.01274 5.19769 5.65743 5.78307 6.01667 6.09642 6.24165 6.32790 6.54411 6.83674 6.95225 7.15271 7.26965 7.41046 7.78514 8.12177 8.27047 8.51343 9.80764 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.020318 B = 0.014246 C = 0.008861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.779081 B = 1964.970374 C = 3159.140902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.006 3.994 3 C -0.281 4.281 4 C 0.147 3.853 5 F -0.159 7.159 6 C -0.273 4.273 7 C 0.126 3.874 8 C -0.421 4.421 9 H 0.110 0.890 10 C 0.087 3.913 11 N -0.784 5.784 12 Si 0.906 3.094 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.242 1.242 16 C -0.190 4.190 17 Br -0.085 7.085 18 H 0.068 0.932 19 H 0.072 0.928 20 H 0.060 0.940 21 H 0.113 0.887 22 H 0.117 0.883 23 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.723 2.373 -0.889 7.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.004 3.996 3 C -0.302 4.302 4 C 0.127 3.873 5 F -0.138 7.138 6 C -0.294 4.294 7 C 0.121 3.879 8 C -0.448 4.448 9 H 0.128 0.872 10 C -0.135 4.135 11 N -0.406 5.406 12 Si 0.732 3.268 13 H -0.192 1.192 14 H -0.211 1.211 15 H -0.165 1.165 16 C -0.270 4.270 17 Br 0.000 7.000 18 H 0.086 0.914 19 H 0.090 0.910 20 H 0.079 0.921 21 H 0.131 0.869 22 H 0.135 0.865 23 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.811 1.585 -0.892 7.050 hybrid contribution 0.869 1.075 -0.474 1.462 sum -5.942 2.660 -1.367 6.652 Atomic orbital electron populations 1.20904 0.91931 1.02499 1.02093 1.19088 0.94773 0.91155 0.94589 1.20067 0.91465 0.97130 1.21530 1.17563 0.90301 0.79901 0.99494 1.91376 1.81648 1.46705 1.94049 1.20912 0.99077 0.91105 1.18332 1.17196 0.89803 0.92558 0.88326 1.19739 0.99153 0.96961 1.28931 0.87226 1.26230 0.94731 0.96202 0.96364 1.69669 1.07519 1.29274 1.34115 0.86358 0.80360 0.80159 0.79951 1.19187 1.21124 1.16458 1.21397 0.93701 0.88544 1.23335 1.96302 1.74310 1.31217 1.98141 0.91380 0.90960 0.92124 0.86936 0.86528 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 9.54 36.00 0.34 -1.56 14 2 C 0.01 0.13 5.87 -104.68 -0.61 -0.49 14 3 C -0.28 -5.84 9.68 -39.22 -0.38 -6.22 14 4 C 0.15 3.31 7.28 -39.50 -0.29 3.03 14 5 F -0.16 -3.42 17.26 2.25 0.04 -3.38 14 6 C -0.27 -6.58 7.14 -38.82 -0.28 -6.86 14 7 C 0.13 3.12 5.10 -106.81 -0.54 2.58 14 8 C -0.42 -10.84 8.89 -37.77 -0.34 -11.18 14 9 H 0.11 2.94 7.21 -52.49 -0.38 2.56 14 10 C 0.09 2.18 5.41 -17.34 -0.09 2.09 14 11 N -0.78 -19.77 13.93 55.55 0.77 -19.00 14 12 Si 0.91 20.16 24.52 -169.99 -4.17 15.99 14 13 H -0.27 -5.81 6.72 56.52 0.38 -5.43 14 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 14 15 H -0.24 -5.57 6.86 56.52 0.39 -5.19 14 16 C -0.19 -4.30 6.28 -38.77 -0.24 -4.54 14 17 Br -0.08 -1.69 30.23 -68.01 -2.06 -3.75 14 18 H 0.07 1.02 8.14 -51.93 -0.42 0.59 14 19 H 0.07 1.14 6.63 -51.93 -0.34 0.80 14 20 H 0.06 0.85 8.08 -51.93 -0.42 0.44 14 21 H 0.11 2.05 8.06 -52.49 -0.42 1.63 14 22 H 0.12 2.80 4.77 -52.49 -0.25 2.55 14 23 H 0.29 6.60 8.30 -40.82 -0.34 6.26 14 LS Contribution 222.99 15.07 3.36 3.36 Total: -1.00 -25.45 222.99 -5.89 -31.34 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -1.41 Total: -1.41 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -2.43 Total: -23.15 kcal Atomic # 7 Polarization: -19.77 SS G_CDS: 0.77 Total: -19.00 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.04 Total: -3.38 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.17 Total: 15.99 kcal Atomic # 35 Polarization: -1.69 SS G_CDS: -2.06 Total: -3.75 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -25.45 -5.89 -31.34 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575689446.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.299 kcal (2) G-P(sol) polarization free energy of solvation -25.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds