Wall clock time and date at job start Mon Mar 30 2020 06:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38563 * 119.75192 * 2 1 4 4 C 1.37744 * 120.25922 * 179.97438 * 3 2 1 5 5 Br 1.89096 * 120.11545 * 180.02562 * 4 3 2 6 6 C 1.40862 * 119.76638 * 0.30040 * 4 3 2 7 7 C 1.41348 * 120.23544 * 179.71951 * 6 4 3 8 8 H 1.07995 * 119.99906 * 25.20032 * 7 6 4 9 9 C 1.39934 * 119.99823 * 205.19402 * 7 6 4 10 10 N 1.30836 * 120.00220 * 15.21638 * 9 7 6 11 11 Si 1.86800 * 120.00109 * 195.21361 * 9 7 6 12 12 H 1.48503 * 109.47043 * 60.00484 * 11 9 7 13 13 H 1.48499 * 109.47142 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47354 * 300.00237 * 11 9 7 15 15 C 1.40669 * 119.51834 * 359.47015 * 6 4 3 16 16 C 1.37824 * 119.73411 * 0.48743 * 15 6 4 17 17 F 1.35097 * 119.88477 * 179.76600 * 16 15 6 18 18 H 1.09006 * 109.47405 * 90.00240 * 1 2 3 19 19 H 1.09002 * 109.47159 * 209.99861 * 1 2 3 20 20 H 1.09002 * 109.47601 * 330.00417 * 1 2 3 21 21 H 1.08004 * 119.87095 * 0.02562 * 3 2 1 22 22 H 0.97003 * 120.00527 * 179.97438 * 10 9 7 23 23 H 1.08002 * 120.12846 * 180.27399 * 15 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2030 0.0000 4 6 3.5719 1.2152 0.0005 5 35 4.5062 2.8592 0.0013 6 6 4.2821 -0.0013 -0.0053 7 6 5.6955 -0.0004 -0.0108 8 1 6.2365 0.8452 0.3875 9 6 6.3939 -1.0952 -0.5322 10 7 5.7719 -1.9744 -1.2750 11 14 8.2144 -1.3013 -0.1678 12 1 8.4160 -1.4130 1.2993 13 1 8.7160 -2.5312 -0.8318 14 1 8.9586 -0.1235 -0.6815 15 6 3.5744 -1.2170 -0.0004 16 6 2.1962 -1.2057 0.0000 17 9 1.5134 -2.3714 0.0000 18 1 -0.3634 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3634 0.8900 0.5138 21 1 1.6484 2.1347 0.0004 22 1 6.2560 -2.7332 -1.6368 23 1 4.1089 -2.1555 -0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575689533.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:13 Heat of formation + Delta-G solvation = -45.135472 kcal Electronic energy + Delta-G solvation = -11804.122051 eV Core-core repulsion = 9383.979041 eV Total energy + Delta-G solvation = -2420.143011 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.79061 -37.66218 -34.17793 -31.59857 -30.31900 -27.76176 -27.67494 -23.99669 -21.40032 -20.08781 -17.77533 -15.99119 -15.19803 -14.80592 -14.53926 -14.13430 -13.07488 -12.79310 -12.58667 -12.31605 -11.88232 -11.70877 -11.29129 -11.21905 -10.79462 -10.55620 -10.12307 -9.95122 -9.47033 -9.28030 -8.91700 -7.65766 -7.33016 -6.97701 -4.64920 2.39761 2.58773 2.97581 2.99964 3.05350 3.06650 3.78177 4.30278 5.24965 5.49379 5.93002 5.96158 6.14699 6.27889 6.47825 6.77020 6.80511 6.99259 7.21827 7.29517 7.56253 7.63875 7.95228 8.31156 8.54206 8.56658 9.92673 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.013008 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.163190 B = 2151.935101 C = 3645.636654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.251 4.251 3 C -0.031 4.031 4 C -0.198 4.198 5 Br -0.100 7.100 6 C 0.144 3.856 7 C -0.438 4.438 8 H 0.096 0.904 9 C 0.075 3.925 10 N -0.779 5.779 11 Si 0.915 3.085 12 H -0.260 1.260 13 H -0.276 1.276 14 H -0.261 1.261 15 C -0.191 4.191 16 C 0.119 3.881 17 F -0.161 7.161 18 H 0.048 0.952 19 H 0.051 0.949 20 H 0.051 0.949 21 H 0.107 0.893 22 H 0.287 0.713 23 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 4.226 1.564 4.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.253 4.253 3 C -0.051 4.051 4 C -0.278 4.278 5 Br -0.015 7.015 6 C 0.140 3.860 7 C -0.466 4.466 8 H 0.114 0.886 9 C -0.146 4.146 10 N -0.403 5.403 11 Si 0.739 3.261 12 H -0.184 1.184 13 H -0.201 1.201 14 H -0.185 1.185 15 C -0.212 4.212 16 C 0.099 3.901 17 F -0.140 7.140 18 H 0.067 0.933 19 H 0.070 0.930 20 H 0.070 0.930 21 H 0.125 0.875 22 H 0.098 0.902 23 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.925 4.572 1.409 4.873 hybrid contribution 0.474 -0.770 -0.010 0.905 sum -0.450 3.801 1.399 4.076 Atomic orbital electron populations 1.20310 0.92313 1.00929 1.00438 1.19034 0.94891 0.91553 1.19861 1.20149 0.91907 0.95914 0.97157 1.21472 0.93037 0.89487 1.23842 1.96282 1.78621 1.28273 1.98365 1.17144 0.93457 0.88471 0.86977 1.19839 0.90907 1.02777 1.33046 0.88619 1.26048 1.01823 0.94308 0.92417 1.69792 1.39133 1.10105 1.21235 0.86223 0.80954 0.78801 0.80153 1.18431 1.20087 1.18495 1.21287 0.90249 1.00059 1.09645 1.17563 0.90197 0.79772 1.02538 1.91330 1.80613 1.47796 1.94302 0.93347 0.93026 0.92994 0.87491 0.90167 0.84547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.82 36.00 0.35 -1.12 14 2 C -0.25 -5.49 5.91 -104.27 -0.62 -6.11 14 3 C -0.03 -0.68 9.41 -39.64 -0.37 -1.05 14 4 C -0.20 -4.67 6.28 -38.77 -0.24 -4.91 14 5 Br -0.10 -2.05 32.09 -68.01 -2.18 -4.23 14 6 C 0.14 3.69 5.57 -106.80 -0.60 3.09 14 7 C -0.44 -10.97 8.47 -37.76 -0.32 -11.29 14 8 H 0.10 2.33 6.87 -52.49 -0.36 1.97 14 9 C 0.07 1.77 5.19 -17.34 -0.09 1.68 14 10 N -0.78 -19.19 10.87 55.55 0.60 -18.58 14 11 Si 0.92 17.83 29.59 -169.99 -5.03 12.81 14 12 H -0.26 -5.02 7.11 56.52 0.40 -4.62 14 13 H -0.28 -5.23 7.11 56.52 0.40 -4.83 14 14 H -0.26 -5.04 7.11 56.52 0.40 -4.64 14 15 C -0.19 -4.88 8.66 -38.82 -0.34 -5.22 14 16 C 0.12 2.84 7.22 -39.50 -0.29 2.56 14 17 F -0.16 -3.70 16.45 2.25 0.04 -3.66 14 18 H 0.05 0.81 8.14 -51.93 -0.42 0.39 14 19 H 0.05 0.89 7.62 -51.93 -0.40 0.49 14 20 H 0.05 0.81 8.08 -51.93 -0.42 0.39 14 21 H 0.11 2.06 8.06 -52.48 -0.42 1.64 14 22 H 0.29 6.42 8.30 -40.82 -0.34 6.08 14 23 H 0.14 3.58 6.13 -52.49 -0.32 3.26 14 LS Contribution 230.03 15.07 3.47 3.47 Total: -1.00 -25.37 230.03 -7.09 -32.46 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -1.48 Total: 0.13 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -2.51 Total: -22.38 kcal Atomic # 7 Polarization: -19.19 SS G_CDS: 0.60 Total: -18.58 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 35 Polarization: -2.05 SS G_CDS: -2.18 Total: -4.23 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -25.37 -7.09 -32.46 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575689533.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.680 kcal (2) G-P(sol) polarization free energy of solvation -25.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds