Wall clock time and date at job start Mon Mar 30 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36523 * 119.80602 * 2 1 4 4 C 1.40733 * 119.90456 * 179.72320 * 3 2 1 5 5 C 1.41264 * 120.22309 * 180.02562 * 4 3 2 6 6 H 1.08008 * 120.00025 * 153.82681 * 5 4 3 7 7 C 1.39915 * 120.00326 * 333.83253 * 5 4 3 8 8 N 1.30863 * 119.99855 * 343.87398 * 7 5 4 9 9 Si 1.86804 * 120.00249 * 163.87946 * 7 5 4 10 10 H 1.48500 * 109.47106 * 89.99879 * 9 7 5 11 11 H 1.48496 * 109.46827 * 209.99746 * 9 7 5 12 12 H 1.48492 * 109.46855 * 329.99694 * 9 7 5 13 13 C 1.40916 * 119.55473 * 0.02562 * 4 3 2 14 14 Br 1.89096 * 120.19013 * 180.02562 * 13 4 3 15 15 C 1.37666 * 119.62367 * 0.02562 * 13 4 3 16 16 C 1.38915 * 120.08203 * 359.97438 * 15 13 4 17 17 F 1.35103 * 119.77372 * 180.02562 * 16 15 13 18 18 H 1.08998 * 109.47016 * 90.00323 * 1 2 3 19 19 H 1.08997 * 109.46565 * 210.00040 * 1 2 3 20 20 H 1.08999 * 109.46966 * 329.99726 * 1 2 3 21 21 H 1.07996 * 120.04875 * 359.74668 * 3 2 1 22 22 H 0.96995 * 119.99836 * 185.04681 * 8 7 5 23 23 H 1.08001 * 119.95837 * 179.97438 * 15 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1857 1.1846 0.0000 4 6 3.5930 1.1871 0.0059 5 6 4.3020 2.4089 0.0065 6 1 5.2973 2.4555 0.4231 7 6 3.7148 3.5588 -0.5326 8 7 2.6666 3.4555 -1.3093 9 14 4.4270 5.2414 -0.1437 10 1 5.4533 5.5909 -1.1585 11 1 3.3424 6.2553 -0.1671 12 1 5.0514 5.2152 1.2033 13 6 4.2902 -0.0376 0.0112 14 35 6.1810 -0.0553 0.0199 15 6 3.5868 -1.2210 0.0100 16 6 2.1978 -1.2055 0.0042 17 9 1.5138 -2.3706 0.0036 18 1 -0.3633 -0.0001 -1.0276 19 1 -0.3632 -0.8900 0.5138 20 1 -0.3633 0.8900 0.5139 21 1 1.6433 2.1185 -0.0041 22 1 2.3038 4.2444 -1.7416 23 1 4.1157 -2.1627 0.0137 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575689562.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:38 Heat of formation + Delta-G solvation = -55.548698 kcal Electronic energy + Delta-G solvation = -11806.830440 eV Core-core repulsion = 9386.235878 eV Total energy + Delta-G solvation = -2420.594562 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.36183 -39.52155 -35.69167 -33.94173 -31.42876 -30.94807 -27.56115 -26.56417 -23.31369 -21.76751 -19.13096 -17.86316 -17.40519 -16.58697 -16.21869 -15.66814 -14.68827 -14.23540 -14.05058 -13.91504 -13.65226 -13.31925 -13.19488 -12.81827 -12.69475 -12.23779 -11.82820 -11.42681 -11.20959 -11.02078 -10.68000 -9.45698 -9.15428 -8.74055 -6.45401 0.60981 0.76666 1.23716 1.41146 1.47359 1.55586 2.18276 2.54041 3.41618 3.91088 4.11163 4.27798 4.57277 4.81653 4.86753 5.03304 5.14429 5.19972 5.35750 5.50496 5.83569 5.86897 6.14364 6.46531 6.74041 6.77195 8.20442 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.018113 B = 0.012825 C = 0.007677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.471068 B = 2182.720202 C = 3646.388922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.092 4.092 3 C -0.152 4.152 4 C 0.099 3.901 5 C -0.463 4.463 6 H 0.093 0.907 7 C 0.041 3.959 8 N -0.807 5.807 9 Si 0.981 3.019 10 H -0.262 1.262 11 H -0.264 1.264 12 H -0.257 1.257 13 C -0.201 4.201 14 Br -0.072 7.072 15 C -0.085 4.085 16 C -0.057 4.057 17 F -0.162 7.162 18 H 0.071 0.929 19 H 0.068 0.932 20 H 0.073 0.927 21 H 0.125 0.875 22 H 0.295 0.705 23 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.849 -0.750 1.636 2.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.094 4.094 3 C -0.172 4.172 4 C 0.094 3.906 5 C -0.491 4.491 6 H 0.111 0.889 7 C -0.177 4.177 8 N -0.431 5.431 9 Si 0.801 3.199 10 H -0.186 1.186 11 H -0.188 1.188 12 H -0.180 1.180 13 C -0.281 4.281 14 Br 0.013 6.987 15 C -0.106 4.106 16 C -0.078 4.078 17 F -0.141 7.141 18 H 0.089 0.911 19 H 0.086 0.914 20 H 0.092 0.908 21 H 0.143 0.857 22 H 0.106 0.894 23 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.315 -0.656 1.536 2.855 hybrid contribution -0.223 0.301 -0.096 0.387 sum 2.092 -0.355 1.441 2.565 Atomic orbital electron populations 1.20638 0.89817 1.02738 1.02444 1.19744 0.97357 0.91832 1.00439 1.20861 0.93577 0.96438 1.06317 1.17808 0.92528 0.91937 0.88306 1.20035 1.02582 0.92635 1.33815 0.88885 1.26795 0.93842 1.04877 0.92219 1.69809 1.19343 1.34127 1.19801 0.85193 0.78976 0.75525 0.80212 1.18632 1.18797 1.18035 1.21405 0.88500 0.95079 1.23112 1.96262 1.05056 1.99103 1.98288 1.20592 0.92171 0.97357 1.00452 1.17096 0.89237 0.80706 1.20720 1.91286 1.80002 1.47052 1.95797 0.91055 0.91351 0.90841 0.85694 0.89356 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.59 9.82 71.24 0.70 -2.89 14 2 C -0.09 -4.16 5.85 -20.10 -0.12 -4.27 14 3 C -0.15 -7.45 8.25 22.48 0.19 -7.26 14 4 C 0.10 5.02 5.56 -21.27 -0.12 4.90 14 5 C -0.46 -22.95 8.44 23.42 0.20 -22.76 14 6 H 0.09 4.50 6.91 -2.91 -0.02 4.48 14 7 C 0.04 1.88 5.16 85.24 0.44 2.32 14 8 N -0.81 -38.37 10.96 21.82 0.24 -38.13 14 9 Si 0.98 35.17 29.59 68.60 2.03 37.20 14 10 H -0.26 -9.16 7.11 99.48 0.71 -8.45 14 11 H -0.26 -8.95 7.11 99.48 0.71 -8.24 14 12 H -0.26 -9.13 7.11 99.48 0.71 -8.42 14 13 C -0.20 -9.52 6.28 22.79 0.14 -9.38 14 14 Br -0.07 -2.92 32.11 -20.37 -0.65 -3.57 14 15 C -0.08 -3.84 9.76 22.30 0.22 -3.62 14 16 C -0.06 -2.59 7.26 22.60 0.16 -2.42 14 17 F -0.16 -6.92 16.44 44.97 0.74 -6.18 14 18 H 0.07 2.42 8.14 -2.39 -0.02 2.40 14 19 H 0.07 2.26 7.62 -2.39 -0.02 2.24 14 20 H 0.07 2.42 8.08 -2.39 -0.02 2.40 14 21 H 0.13 6.22 6.21 -2.91 -0.02 6.21 14 22 H 0.30 12.59 8.30 -92.71 -0.77 11.82 14 23 H 0.13 5.13 8.06 -2.91 -0.02 5.11 14 Total: -1.00 -51.92 230.13 5.40 -46.52 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.23 Total: 9.54 kcal Atomic # 6 Polarization: -47.20 SS G_CDS: 1.81 Total: -45.39 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.24 Total: -38.13 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.74 Total: -6.18 kcal Atomic # 14 Polarization: 35.17 SS G_CDS: 2.03 Total: 37.20 kcal Atomic # 35 Polarization: -2.92 SS G_CDS: -0.65 Total: -3.57 kcal Total: -51.92 5.40 -46.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575689562.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.025 kcal (2) G-P(sol) polarization free energy of solvation -51.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds