Wall clock time and date at job start Mon Mar 30 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37606 * 120.10090 * 2 1 4 4 C 1.38690 * 120.26636 * 180.02562 * 3 2 1 5 5 Br 1.89095 * 119.77607 * 180.02562 * 4 3 2 6 6 C 1.39016 * 120.45143 * 0.27839 * 4 3 2 7 7 F 1.35088 * 119.91027 * 179.72279 * 6 4 3 8 8 C 1.37767 * 120.18156 * 359.48749 * 6 4 3 9 9 C 1.40719 * 119.73584 * 0.48673 * 8 6 4 10 10 C 1.41361 * 120.22034 * 179.74786 * 9 8 6 11 11 H 1.07999 * 119.99643 * 205.45555 * 10 9 8 12 12 C 1.39929 * 119.99750 * 25.45152 * 10 9 8 13 13 N 1.30832 * 120.00514 * 15.30379 * 12 10 9 14 14 Si 1.86803 * 119.99645 * 195.30071 * 12 10 9 15 15 H 1.48503 * 109.46924 * 90.00405 * 14 12 10 16 16 H 1.48502 * 109.46977 * 210.00310 * 14 12 10 17 17 H 1.48496 * 109.47352 * 330.00092 * 14 12 10 18 18 H 1.09001 * 109.47614 * 89.99433 * 1 2 3 19 19 H 1.08998 * 109.47367 * 210.00050 * 1 2 3 20 20 H 1.09003 * 109.47168 * 329.99430 * 1 2 3 21 21 H 1.08002 * 119.86641 * 0.02562 * 3 2 1 22 22 H 1.08005 * 120.12916 * 180.25291 * 8 6 4 23 23 H 0.96998 * 120.00746 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1905 0.0000 4 6 3.5839 1.1945 -0.0005 5 35 4.5183 2.8385 0.0002 6 6 4.2919 -0.0019 -0.0069 7 9 5.6427 0.0148 -0.0130 8 6 3.6198 -1.2044 -0.0021 9 6 2.2127 -1.2176 -0.0011 10 6 1.5127 -2.4457 -0.0015 11 1 0.5113 -2.4963 -0.4029 12 6 2.1172 -3.5958 0.5179 13 7 3.1859 -3.4924 1.2655 14 14 1.3983 -5.2789 0.1439 15 1 2.0147 -5.8160 -1.0958 16 1 1.6787 -6.1993 1.2751 17 1 -0.0697 -5.1594 -0.0447 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3633 0.8899 0.5139 21 1 1.6565 2.1255 0.0004 22 1 4.1708 -2.1334 -0.0029 23 1 3.6048 -4.2896 1.6259 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575689564.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:27 Heat of formation + Delta-G solvation = -44.450512 kcal Electronic energy + Delta-G solvation = -11802.461228 eV Core-core repulsion = 9382.347919 eV Total energy + Delta-G solvation = -2420.113308 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.75558 -37.79764 -34.00556 -31.66593 -30.40629 -28.77647 -26.18691 -24.66352 -21.47458 -19.91656 -17.73327 -16.10183 -15.17072 -14.83563 -14.48899 -14.04300 -13.09424 -12.75627 -12.66607 -12.52770 -11.70425 -11.35184 -11.23229 -11.07720 -10.98979 -10.65476 -10.18042 -9.77454 -9.70709 -9.36875 -9.21419 -7.64984 -7.37414 -7.01368 -4.70025 2.34815 2.62862 2.77398 2.93451 2.97143 2.97760 3.72424 4.25702 5.24854 5.47768 5.96399 6.20318 6.32720 6.51449 6.61198 6.73624 6.84354 6.93936 7.30080 7.35562 7.46661 7.66867 7.95760 8.27225 8.55028 8.56481 9.88113 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.043421 B = 0.007279 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.687601 B = 3845.946999 C = 4413.713526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.200 4.200 3 C -0.038 4.038 4 C -0.242 4.242 5 Br -0.102 7.102 6 C 0.133 3.867 7 F -0.154 7.154 8 C -0.197 4.197 9 C 0.137 3.863 10 C -0.439 4.439 11 H 0.090 0.910 12 C 0.072 3.928 13 N -0.776 5.776 14 Si 0.916 3.084 15 H -0.265 1.265 16 H -0.275 1.275 17 H -0.259 1.259 18 H 0.046 0.954 19 H 0.064 0.936 20 H 0.042 0.958 21 H 0.107 0.893 22 H 0.137 0.863 23 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 4.336 -1.489 4.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.202 4.202 3 C -0.058 4.058 4 C -0.322 4.322 5 Br -0.018 7.018 6 C 0.112 3.888 7 F -0.133 7.133 8 C -0.218 4.218 9 C 0.134 3.866 10 C -0.467 4.467 11 H 0.108 0.892 12 C -0.149 4.149 13 N -0.400 5.400 14 Si 0.740 3.260 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.182 1.182 18 H 0.065 0.935 19 H 0.083 0.917 20 H 0.061 0.939 21 H 0.125 0.875 22 H 0.155 0.845 23 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.304 4.792 -1.331 4.982 hybrid contribution -0.084 -1.087 -0.020 1.090 sum -0.388 3.705 -1.351 3.963 Atomic orbital electron populations 1.20394 0.92498 1.01065 1.00119 1.19757 0.94965 0.92233 1.13279 1.20170 0.90689 0.97170 0.97727 1.20876 0.94347 0.87407 1.29608 1.96351 1.77391 1.29393 1.98696 1.17334 0.75614 0.93654 1.02246 1.91376 1.30277 1.97457 1.94181 1.21281 0.95257 0.94977 1.10304 1.17330 0.90652 0.92154 0.86500 1.19745 1.01760 0.91881 1.33320 0.89172 1.26087 0.94246 1.02086 0.92480 1.69794 1.16672 1.32501 1.20997 0.86164 0.80599 0.80073 0.79195 1.18949 1.19998 1.18248 0.93545 0.91684 0.93897 0.87516 0.84525 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 9.40 36.00 0.34 -1.24 14 2 C -0.20 -4.52 5.94 -103.91 -0.62 -5.14 14 3 C -0.04 -0.82 9.41 -39.65 -0.37 -1.20 14 4 C -0.24 -5.54 6.25 -39.13 -0.24 -5.79 14 5 Br -0.10 -2.00 33.26 -68.01 -2.26 -4.26 14 6 C 0.13 3.26 7.25 -39.47 -0.29 2.97 14 7 F -0.15 -3.70 16.71 2.25 0.04 -3.66 14 8 C -0.20 -5.03 8.66 -38.82 -0.34 -5.36 14 9 C 0.14 3.41 5.57 -106.83 -0.60 2.81 14 10 C -0.44 -10.54 8.14 -37.76 -0.31 -10.85 14 11 H 0.09 2.03 6.85 -52.49 -0.36 1.67 14 12 C 0.07 1.65 5.19 -17.34 -0.09 1.56 14 13 N -0.78 -18.78 10.87 55.55 0.60 -18.17 14 14 Si 0.92 17.12 29.59 -169.99 -5.03 12.10 14 15 H -0.26 -4.94 7.11 56.52 0.40 -4.53 14 16 H -0.28 -5.07 7.11 56.52 0.40 -4.67 14 17 H -0.26 -4.74 7.11 56.52 0.40 -4.33 14 18 H 0.05 0.80 8.14 -51.93 -0.42 0.38 14 19 H 0.06 1.24 6.77 -51.93 -0.35 0.89 14 20 H 0.04 0.71 8.09 -51.93 -0.42 0.29 14 21 H 0.11 2.07 8.06 -52.49 -0.42 1.65 14 22 H 0.14 3.59 6.13 -52.48 -0.32 3.27 14 23 H 0.29 6.30 8.30 -40.82 -0.34 5.96 14 LS Contribution 229.89 15.07 3.46 3.46 Total: -1.00 -25.07 229.89 -7.13 -32.20 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -1.43 Total: 0.57 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.51 Total: -22.23 kcal Atomic # 7 Polarization: -18.78 SS G_CDS: 0.60 Total: -18.17 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.10 kcal Atomic # 35 Polarization: -2.00 SS G_CDS: -2.26 Total: -4.26 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -25.07 -7.13 -32.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575689564.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.247 kcal (2) G-P(sol) polarization free energy of solvation -25.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds