Wall clock time and date at job start Mon Mar 30 2020 06:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37606 * 120.10090 * 2 1 4 4 C 1.38690 * 120.26636 * 180.02562 * 3 2 1 5 5 Br 1.89095 * 119.77607 * 180.02562 * 4 3 2 6 6 C 1.39016 * 120.45143 * 0.27839 * 4 3 2 7 7 F 1.35088 * 119.91027 * 179.72279 * 6 4 3 8 8 C 1.37767 * 120.18156 * 359.48749 * 6 4 3 9 9 C 1.40719 * 119.73584 * 0.48673 * 8 6 4 10 10 C 1.41361 * 120.22034 * 179.74786 * 9 8 6 11 11 H 1.07999 * 119.99643 * 205.45555 * 10 9 8 12 12 C 1.39929 * 119.99750 * 25.45152 * 10 9 8 13 13 N 1.30832 * 120.00514 * 15.30379 * 12 10 9 14 14 Si 1.86803 * 119.99645 * 195.30071 * 12 10 9 15 15 H 1.48503 * 109.46924 * 90.00405 * 14 12 10 16 16 H 1.48502 * 109.46977 * 210.00310 * 14 12 10 17 17 H 1.48496 * 109.47352 * 330.00092 * 14 12 10 18 18 H 1.09001 * 109.47614 * 89.99433 * 1 2 3 19 19 H 1.08998 * 109.47367 * 210.00050 * 1 2 3 20 20 H 1.09003 * 109.47168 * 329.99430 * 1 2 3 21 21 H 1.08002 * 119.86641 * 0.02562 * 3 2 1 22 22 H 1.08005 * 120.12916 * 180.25291 * 8 6 4 23 23 H 0.96998 * 120.00746 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1970 1.1905 0.0000 4 6 3.5839 1.1945 -0.0005 5 35 4.5183 2.8385 0.0002 6 6 4.2919 -0.0019 -0.0069 7 9 5.6427 0.0148 -0.0130 8 6 3.6198 -1.2044 -0.0021 9 6 2.2127 -1.2176 -0.0011 10 6 1.5127 -2.4457 -0.0015 11 1 0.5113 -2.4963 -0.4029 12 6 2.1172 -3.5958 0.5179 13 7 3.1859 -3.4924 1.2655 14 14 1.3983 -5.2789 0.1439 15 1 2.0147 -5.8160 -1.0958 16 1 1.6787 -6.1993 1.2751 17 1 -0.0697 -5.1594 -0.0447 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3633 0.8899 0.5139 21 1 1.6565 2.1255 0.0004 22 1 4.1708 -2.1334 -0.0029 23 1 3.6048 -4.2896 1.6259 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575689564.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:27 Heat of formation + Delta-G solvation = -56.017961 kcal Electronic energy + Delta-G solvation = -11802.962830 eV Core-core repulsion = 9382.347919 eV Total energy + Delta-G solvation = -2420.614911 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 257.975 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.65432 -39.56576 -35.76408 -33.37338 -32.16748 -30.51902 -27.88750 -26.41236 -23.28622 -21.68034 -19.53939 -17.92056 -16.95993 -16.52782 -16.36891 -15.79978 -14.77440 -14.44628 -14.31551 -14.24256 -13.34318 -13.00133 -12.83905 -12.71082 -12.62646 -12.15225 -11.93520 -11.46364 -11.42438 -11.02674 -10.91982 -9.45170 -9.17551 -8.74983 -6.52130 0.55832 0.81312 1.02659 1.40464 1.48107 1.54786 2.16081 2.51191 3.43745 3.64441 4.24461 4.58955 4.70618 4.86981 4.98265 5.08921 5.17303 5.27616 5.48662 5.60318 5.66133 5.90954 6.14768 6.46048 6.74793 6.76339 8.17779 Molecular weight = 257.98amu Principal moments of inertia in cm(-1) A = 0.043421 B = 0.007279 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.687601 B = 3845.946999 C = 4413.713526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.206 4.206 3 C -0.039 4.039 4 C -0.253 4.253 5 Br -0.071 7.071 6 C 0.116 3.884 7 F -0.157 7.157 8 C -0.223 4.223 9 C 0.110 3.890 10 C -0.460 4.460 11 H 0.101 0.899 12 C 0.032 3.968 13 N -0.811 5.811 14 Si 0.988 3.012 15 H -0.264 1.264 16 H -0.270 1.270 17 H -0.248 1.248 18 H 0.063 0.937 19 H 0.059 0.941 20 H 0.067 0.933 21 H 0.136 0.864 22 H 0.118 0.882 23 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 4.612 -1.738 5.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.208 4.208 3 C -0.059 4.059 4 C -0.334 4.334 5 Br 0.013 6.987 6 C 0.095 3.905 7 F -0.136 7.136 8 C -0.244 4.244 9 C 0.107 3.893 10 C -0.487 4.487 11 H 0.119 0.881 12 C -0.186 4.186 13 N -0.436 5.436 14 Si 0.808 3.192 15 H -0.188 1.188 16 H -0.195 1.195 17 H -0.171 1.171 18 H 0.081 0.919 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.154 0.846 22 H 0.136 0.864 23 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.690 5.090 -1.579 5.591 hybrid contribution 0.394 -1.071 0.069 1.143 sum -1.296 4.019 -1.510 4.485 Atomic orbital electron populations 1.20419 0.89795 1.02015 1.01453 1.20233 0.97066 0.91685 1.11820 1.20506 0.90415 0.98171 0.96782 1.21143 0.95172 0.88304 1.28744 1.96350 1.76939 1.26788 1.98629 1.17530 0.75651 0.94334 1.03014 1.91354 1.30438 1.97514 1.94294 1.21242 0.95999 0.94729 1.12452 1.17709 0.90634 0.93730 0.87244 1.20064 1.02440 0.92386 1.33840 0.88073 1.26990 0.94297 1.05670 0.91633 1.69861 1.17969 1.33878 1.21846 0.85083 0.80185 0.75048 0.78843 1.18849 1.19501 1.17104 0.91867 0.92212 0.91457 0.84638 0.86430 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.82 9.40 71.23 0.67 -2.15 14 2 C -0.21 -9.06 5.94 -19.41 -0.12 -9.17 14 3 C -0.04 -1.64 9.41 22.23 0.21 -1.43 14 4 C -0.25 -11.37 6.25 22.56 0.14 -11.23 14 5 Br -0.07 -2.66 33.26 -20.37 -0.68 -3.34 14 6 C 0.12 5.76 7.25 22.34 0.16 5.92 14 7 F -0.16 -7.65 16.71 44.97 0.75 -6.90 14 8 C -0.22 -11.70 8.66 22.76 0.20 -11.50 14 9 C 0.11 5.51 5.57 -21.29 -0.12 5.40 14 10 C -0.46 -22.05 8.14 23.45 0.19 -21.85 14 11 H 0.10 4.46 6.85 -2.91 -0.02 4.44 14 12 C 0.03 1.46 5.19 85.25 0.44 1.90 14 13 N -0.81 -40.02 10.87 21.82 0.24 -39.78 14 14 Si 0.99 34.54 29.59 68.60 2.03 36.57 14 15 H -0.26 -9.11 7.11 99.48 0.71 -8.41 14 16 H -0.27 -9.16 7.11 99.48 0.71 -8.45 14 17 H -0.25 -8.16 7.11 99.48 0.71 -7.46 14 18 H 0.06 2.01 8.14 -2.39 -0.02 1.99 14 19 H 0.06 2.16 6.77 -2.39 -0.02 2.14 14 20 H 0.07 2.02 8.09 -2.39 -0.02 2.00 14 21 H 0.14 4.82 8.06 -2.91 -0.02 4.80 14 22 H 0.12 6.48 6.13 -2.91 -0.02 6.46 14 23 H 0.29 13.10 8.30 -92.71 -0.77 12.33 14 Total: -1.00 -53.08 229.89 5.35 -47.73 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.24 Total: 9.85 kcal Atomic # 6 Polarization: -45.90 SS G_CDS: 1.78 Total: -44.12 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.24 Total: -39.78 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 0.75 Total: -6.90 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Atomic # 35 Polarization: -2.66 SS G_CDS: -0.68 Total: -3.34 kcal Total: -53.08 5.35 -47.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575689564.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.289 kcal (2) G-P(sol) polarization free energy of solvation -53.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds