Wall clock time and date at job start Mon Mar 30 2020 06:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47096 * 2 1 4 4 N 1.46904 * 109.47076 * 119.99867 * 2 1 3 5 5 C 1.46898 * 111.00215 * 269.83670 * 4 2 1 6 6 H 1.09000 * 109.46838 * 338.99142 * 5 4 2 7 7 C 1.52995 * 109.47594 * 98.98852 * 5 4 2 8 8 C 1.53002 * 109.47245 * 218.99360 * 5 4 2 9 9 C 1.50704 * 109.46944 * 64.99369 * 8 5 4 10 10 H 1.07998 * 120.00243 * 0.02562 * 9 8 5 11 11 C 1.37876 * 119.99579 * 180.27587 * 9 8 5 12 12 N 1.31515 * 120.00170 * 359.72717 * 11 9 8 13 13 Si 1.86796 * 119.99916 * 179.72439 * 11 9 8 14 14 H 1.48503 * 109.47322 * 60.00259 * 13 11 9 15 15 H 1.48500 * 109.47282 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47452 * 300.00344 * 13 11 9 17 17 C 1.53001 * 109.47341 * 239.99674 * 2 1 3 18 18 C 1.53000 * 109.47130 * 180.02562 * 17 2 1 19 19 C 1.53002 * 109.46841 * 180.02562 * 18 17 2 20 20 C 1.52997 * 109.47331 * 59.99857 * 19 18 17 21 21 F 1.39904 * 109.46793 * 180.02562 * 20 19 18 22 22 C 1.53000 * 109.47275 * 299.99877 * 20 19 18 23 23 C 1.53002 * 109.46548 * 60.00119 * 17 2 1 24 24 H 1.08998 * 109.47181 * 293.99062 * 1 2 3 25 25 H 1.09005 * 109.46530 * 53.99061 * 1 2 3 26 26 H 1.08999 * 109.47214 * 173.98987 * 1 2 3 27 27 H 1.00906 * 110.99794 * 33.78721 * 4 2 1 28 28 H 1.09003 * 109.47185 * 172.49801 * 7 5 4 29 29 H 1.08997 * 109.47380 * 292.50390 * 7 5 4 30 30 H 1.09000 * 109.47070 * 52.49752 * 7 5 4 31 31 H 1.09000 * 109.46712 * 304.99883 * 8 5 4 32 32 H 1.08995 * 109.47395 * 184.99613 * 8 5 4 33 33 H 0.97000 * 120.00007 * 179.97438 * 12 11 9 34 34 H 1.09000 * 109.47048 * 300.00697 * 17 2 1 35 35 H 1.09000 * 109.46943 * 300.00103 * 18 17 2 36 36 H 1.08997 * 109.47234 * 60.00027 * 18 17 2 37 37 H 1.09000 * 109.47055 * 299.99568 * 19 18 17 38 38 H 1.09004 * 109.47159 * 180.02562 * 19 18 17 39 39 H 1.09000 * 109.47288 * 59.99853 * 20 19 18 40 40 H 1.09000 * 109.46943 * 300.00187 * 22 20 19 41 41 H 1.08997 * 109.47234 * 180.02562 * 22 20 19 42 42 H 1.08995 * 109.47292 * 300.00041 * 23 17 2 43 43 H 1.09000 * 109.46974 * 60.00533 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.1989 0.2477 2.3139 6 1 2.2929 1.2608 1.9230 7 6 0.9878 0.1710 3.2456 8 6 3.4646 -0.1185 3.0916 9 6 4.6704 0.0753 2.2085 10 1 4.5463 0.4251 1.1943 11 6 5.9314 -0.1988 2.6938 12 7 6.0825 -0.6242 3.9291 13 14 7.4254 0.0340 1.5969 14 1 7.5073 1.4530 1.1666 15 1 8.6534 -0.3270 2.3498 16 1 7.3031 -0.8393 0.4020 17 6 2.0401 -0.7213 -1.2492 18 6 3.5701 -0.7218 -1.2488 19 6 4.0801 -1.4426 -2.4984 20 6 3.5706 -0.7206 -3.7473 21 9 4.0365 -1.3801 -4.8898 22 6 2.0406 -0.7201 -3.7477 23 6 1.5300 0.0000 -2.4984 24 1 -0.3633 0.4178 0.9389 25 1 -0.3632 0.6042 -0.8314 26 1 -0.3633 -1.0220 -0.1076 27 1 1.4020 -1.4471 1.4588 28 1 1.1781 0.7665 4.1386 29 1 0.1084 0.5584 2.7312 30 1 0.8140 -0.8665 3.5310 31 1 3.4088 -1.1604 3.4066 32 1 3.5501 0.5224 3.9690 33 1 6.9697 -0.8175 4.2704 34 1 1.6767 -1.7489 -1.2492 35 1 3.9337 0.3057 -1.2486 36 1 3.9330 -1.2359 -0.3588 37 1 3.7164 -2.4702 -2.4989 38 1 5.1701 -1.4434 -2.4979 39 1 3.9342 0.3070 -3.7467 40 1 1.6769 -1.7476 -3.7483 41 1 1.6776 -0.2061 -4.6377 42 1 0.4401 0.0000 -2.4984 43 1 1.8935 1.0276 -2.4984 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595820777.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:17 Heat of formation + Delta-G solvation = -105.253374 kcal Electronic energy + Delta-G solvation = -20536.032576 eV Core-core repulsion = 17528.052219 eV Total energy + Delta-G solvation = -3007.980357 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.59034 -40.00290 -37.78581 -35.07891 -33.61356 -31.79112 -30.19364 -28.94623 -28.71540 -24.99238 -24.09039 -23.43929 -21.64003 -21.39557 -20.51851 -18.29609 -17.18035 -16.92482 -16.55132 -16.25567 -15.91344 -15.71344 -15.06553 -14.69955 -14.55713 -14.33515 -14.12183 -13.80213 -13.58001 -13.35152 -13.20033 -13.14658 -12.93238 -12.62771 -12.50337 -12.37003 -12.20072 -12.08048 -11.94335 -11.79727 -11.71454 -11.53872 -11.16880 -11.02802 -10.83465 -10.63573 -10.43341 -8.82720 -8.05124 -6.07853 1.40838 1.43139 1.49439 2.48659 3.27470 3.43546 3.56468 3.71615 3.76506 3.92832 4.12400 4.29182 4.32123 4.37947 4.47267 4.49882 4.54504 4.55612 4.62848 4.68288 4.77645 4.83982 4.97668 5.06754 5.10151 5.11813 5.21966 5.23859 5.26440 5.30771 5.32059 5.40836 5.51081 5.57301 5.65902 5.73903 5.79414 5.96794 6.43886 6.62949 6.90661 7.07223 7.56885 9.07324 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.007841 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.689493 B = 3569.932832 C = 5250.622690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.058 0.942 4 N -0.674 5.674 5 C 0.104 3.896 6 H 0.052 0.948 7 C -0.167 4.167 8 C 0.038 3.962 9 C -0.485 4.485 10 H 0.063 0.937 11 C -0.007 4.007 12 N -0.944 5.944 13 Si 0.944 3.056 14 H -0.270 1.270 15 H -0.292 1.292 16 H -0.270 1.270 17 C -0.066 4.066 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.087 3.913 21 F -0.232 7.232 22 C -0.134 4.134 23 C -0.106 4.106 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.336 0.664 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.054 0.946 31 H -0.013 1.013 32 H -0.016 1.016 33 H 0.255 0.745 34 H 0.069 0.931 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.712 1.299 -13.777 18.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.019 4.019 3 H 0.077 0.923 4 N -0.304 5.304 5 C -0.006 4.006 6 H 0.070 0.930 7 C -0.225 4.225 8 C 0.000 4.000 9 C -0.523 4.523 10 H 0.082 0.918 11 C -0.202 4.202 12 N -0.587 5.587 13 Si 0.771 3.229 14 H -0.196 1.196 15 H -0.218 1.218 16 H -0.195 1.195 17 C -0.085 4.085 18 C -0.138 4.138 19 C -0.180 4.180 20 C 0.051 3.949 21 F -0.213 7.213 22 C -0.171 4.171 23 C -0.144 4.144 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.154 0.846 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.006 0.994 32 H 0.002 0.998 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.902 1.265 -13.885 18.332 hybrid contribution 0.580 0.025 0.337 0.672 sum -11.321 1.290 -13.548 17.703 Atomic orbital electron populations 1.22564 0.95717 1.02636 1.02398 1.21656 0.93305 0.96726 0.90183 0.92345 1.60339 1.53643 1.11974 1.04479 1.21466 0.93994 0.94393 0.90767 0.92953 1.22460 0.98259 1.01714 1.00106 1.19035 0.93008 0.94252 0.93712 1.21494 0.91329 1.40670 0.98856 0.91836 1.25791 1.01966 0.96318 0.96104 1.70092 1.22905 1.48796 1.16876 0.85813 0.79151 0.78761 0.79206 1.19552 1.21822 1.19506 1.21092 0.94156 0.99673 0.93608 1.21337 0.96372 0.99664 0.96433 1.22109 1.00658 1.00557 0.94696 1.21789 0.96165 0.96139 0.80834 1.92759 1.90653 1.83907 1.53983 1.22039 0.92493 1.02751 0.99847 1.21554 1.01720 0.99108 0.92038 0.92896 0.90679 0.91864 0.84551 0.93252 0.91263 0.92740 0.99423 0.99758 0.93584 0.91277 0.93547 0.91881 0.91047 0.92631 0.89503 0.90752 0.89556 0.89173 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 8.64 71.98 0.62 -2.82 16 2 C 0.09 2.41 2.19 44.92 0.10 2.51 16 3 H 0.06 1.72 7.23 -2.39 -0.02 1.71 16 4 N -0.67 -22.62 5.05 -469.46 -2.37 -24.99 16 5 C 0.10 3.96 2.63 44.91 0.12 4.08 16 6 H 0.05 2.05 7.14 -2.39 -0.02 2.03 16 7 C -0.17 -5.17 9.09 71.98 0.65 -4.52 16 8 C 0.04 1.93 4.65 29.85 0.14 2.07 16 9 C -0.48 -26.97 8.84 25.60 0.23 -26.74 16 10 H 0.06 3.40 7.44 -2.91 -0.02 3.38 16 11 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 12 N -0.94 -58.66 13.29 21.45 0.28 -58.38 16 13 Si 0.94 45.63 29.54 68.60 2.03 47.66 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 15 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 16 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 17 C -0.07 -1.62 1.96 -10.79 -0.02 -1.64 16 18 C -0.10 -3.12 4.92 30.59 0.15 -2.97 16 19 C -0.14 -3.97 5.66 30.59 0.17 -3.79 16 20 C 0.09 2.05 3.88 30.59 0.12 2.17 16 21 F -0.23 -6.34 17.08 44.97 0.77 -5.57 16 22 C -0.13 -2.49 5.66 30.58 0.17 -2.31 16 23 C -0.11 -1.96 4.85 30.58 0.15 -1.81 16 24 H 0.05 1.08 6.02 -2.39 -0.01 1.07 16 25 H 0.07 1.21 6.77 -2.38 -0.02 1.19 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.34 10.32 7.83 -89.69 -0.70 9.62 16 28 H 0.05 1.58 8.13 -2.39 -0.02 1.56 16 29 H 0.07 1.74 6.18 -2.39 -0.01 1.73 16 30 H 0.05 1.65 7.97 -2.39 -0.02 1.63 16 31 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 33 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.06 2.49 7.43 -2.39 -0.02 2.47 16 37 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.32 6.57 -2.39 -0.02 1.30 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -64.03 331.26 4.03 -60.00 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.26 Total: 16.96 kcal Atomic # 6 Polarization: -38.75 SS G_CDS: 3.06 Total: -35.69 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -2.09 Total: -83.37 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.77 Total: -5.57 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -64.03 4.03 -60.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595820777.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.251 kcal (2) G-P(sol) polarization free energy of solvation -64.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds