Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46607 * 2 1 4 4 C 1.53001 * 109.46963 * 119.99685 * 2 1 3 5 5 C 1.50696 * 109.47255 * 185.00190 * 4 2 1 6 6 H 1.08001 * 119.99740 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00382 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00371 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47520 * 89.99738 * 9 7 5 11 11 H 1.48501 * 109.47177 * 209.99802 * 9 7 5 12 12 H 1.48499 * 109.46931 * 329.99606 * 9 7 5 13 13 N 1.46888 * 109.47169 * 240.00068 * 2 1 3 14 14 C 1.46896 * 111.00372 * 85.00030 * 13 2 1 15 15 H 1.09000 * 109.47017 * 324.99780 * 14 13 2 16 16 C 1.52997 * 109.47234 * 84.99806 * 14 13 2 17 17 C 1.53006 * 109.47501 * 204.99926 * 14 13 2 18 18 C 1.52999 * 109.47000 * 180.02562 * 17 14 13 19 19 C 1.53006 * 109.46626 * 180.02562 * 18 17 14 20 20 C 1.52997 * 109.47127 * 299.99539 * 19 18 17 21 21 F 1.39901 * 109.47234 * 300.00554 * 20 19 18 22 22 C 1.53002 * 109.46817 * 60.00361 * 20 19 18 23 23 C 1.52996 * 109.46972 * 299.99733 * 22 20 19 24 24 H 1.09003 * 109.47118 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47152 * 300.00056 * 1 2 3 26 26 H 1.09006 * 109.46749 * 60.00248 * 1 2 3 27 27 H 1.09004 * 109.47150 * 305.00090 * 4 2 1 28 28 H 1.09002 * 109.47207 * 65.00220 * 4 2 1 29 29 H 0.96996 * 120.00081 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00269 * 321.04044 * 13 2 1 31 31 H 1.09002 * 109.47045 * 300.00141 * 16 14 13 32 32 H 1.09000 * 109.47140 * 60.00049 * 16 14 13 33 33 H 1.09001 * 109.47375 * 180.02562 * 16 14 13 34 34 H 1.08993 * 109.46765 * 59.99547 * 17 14 13 35 35 H 1.08993 * 109.47839 * 60.00073 * 18 17 14 36 36 H 1.09000 * 109.47160 * 299.99635 * 18 17 14 37 37 H 1.09001 * 109.46801 * 59.99811 * 19 18 17 38 38 H 1.09001 * 109.46998 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.47407 * 60.00219 * 22 20 19 41 41 H 1.09000 * 109.46986 * 179.97438 * 22 20 19 42 42 H 1.09001 * 109.46993 * 180.02562 * 23 22 20 43 43 H 1.09000 * 109.47380 * 299.99696 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3129 6 1 4.0789 -0.0854 0.5397 7 6 4.2304 -1.1934 2.3579 8 7 3.5764 -1.8377 3.2996 9 14 6.0920 -1.0609 2.4371 10 1 6.4697 0.1612 3.1913 11 1 6.6446 -2.2565 3.1230 12 1 6.6416 -0.9823 1.0598 13 7 2.0197 -0.6924 -1.1993 14 6 2.0825 0.2226 -2.3468 15 1 1.2576 0.9329 -2.2907 16 6 3.4111 0.9809 -2.3223 17 6 1.9771 -0.5797 -3.6454 18 6 2.0432 0.3733 -4.8404 19 6 1.9372 -0.4290 -6.1390 20 6 3.0943 -1.4268 -6.2178 21 9 4.3096 -0.7343 -6.1954 22 6 3.0282 -2.3798 -5.0227 23 6 3.1342 -1.5775 -3.7243 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6053 -0.2616 2.1370 28 1 1.7517 -1.7715 1.2057 29 1 4.0607 -2.2444 4.0351 30 1 1.4497 -1.4979 -1.4099 31 1 3.4862 1.5525 -1.3972 32 1 4.2360 0.2706 -2.3784 33 1 3.4576 1.6602 -3.1735 34 1 1.0306 -1.1199 -3.6628 35 1 2.9899 0.9132 -4.8228 36 1 1.2186 1.0840 -4.7845 37 1 0.9902 -0.9685 -6.1563 38 1 1.9838 0.2500 -6.9904 39 1 3.0190 -1.9981 -7.1431 40 1 2.0813 -2.9194 -5.0401 41 1 3.8523 -3.0910 -5.0791 42 1 3.0876 -2.2565 -2.8728 43 1 4.0812 -1.0380 -3.7068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595820778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = -86.215316 kcal Electronic energy + Delta-G solvation = -20454.872975 eV Core-core repulsion = 17447.718170 eV Total energy + Delta-G solvation = -3007.154805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.63776 -38.90672 -36.28679 -33.26767 -31.95732 -30.91784 -28.83960 -27.69990 -27.09403 -23.69413 -22.91424 -22.64555 -20.43714 -19.51260 -18.84631 -16.53373 -16.16179 -15.57698 -15.39405 -15.10823 -14.86014 -14.28464 -13.96807 -13.34701 -13.15007 -13.10130 -12.67782 -12.52923 -12.18781 -11.89876 -11.74141 -11.69651 -11.55066 -11.47240 -11.35993 -11.13043 -10.78072 -10.69016 -10.47058 -10.35115 -10.17104 -10.00887 -9.93921 -9.75096 -9.16618 -8.90418 -8.19402 -7.45871 -5.81872 -3.78633 3.42867 3.49021 3.54423 4.44054 4.50106 4.58918 4.62099 4.73240 4.79584 5.09279 5.22245 5.26288 5.36537 5.43770 5.48118 5.55780 5.70122 5.78323 5.79656 5.83780 5.90929 5.93060 5.99029 6.07802 6.10842 6.14192 6.26378 6.29759 6.44976 6.54254 6.60418 6.63897 6.68615 6.90081 7.12635 7.66095 7.77608 8.12101 8.14698 8.27411 8.67943 9.27099 9.82364 11.30438 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.005566 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.434750 B = 5029.073770 C = 5749.881866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.089 3.911 3 H 0.063 0.937 4 C 0.034 3.966 5 C -0.483 4.483 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.887 3.113 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.274 1.274 13 N -0.657 5.657 14 C 0.090 3.910 15 H 0.032 0.968 16 C -0.140 4.140 17 C -0.085 4.085 18 C -0.116 4.116 19 C -0.143 4.143 20 C 0.092 3.908 21 F -0.213 7.213 22 C -0.147 4.147 23 C -0.112 4.112 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.256 0.744 30 H 0.328 0.672 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 1.870 -18.565 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 H 0.082 0.918 4 C -0.004 4.004 5 C -0.521 4.521 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.716 3.284 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.287 5.287 14 C -0.020 4.020 15 H 0.050 0.950 16 C -0.198 4.198 17 C -0.104 4.104 18 C -0.154 4.154 19 C -0.181 4.181 20 C 0.055 3.945 21 F -0.194 7.194 22 C -0.185 4.185 23 C -0.149 4.149 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.146 0.854 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.502 1.874 -18.237 18.878 hybrid contribution 0.065 0.100 -0.063 0.135 sum -4.437 1.974 -18.300 18.933 Atomic orbital electron populations 1.22562 0.99818 1.01023 1.00433 1.21812 0.89588 0.98198 0.92447 0.91847 1.19099 0.96239 0.95292 0.89730 1.21163 0.91891 1.32452 1.06643 0.92238 1.24999 0.97827 0.96050 0.96144 1.69967 1.35084 1.37256 1.12424 0.86673 0.86683 0.77127 0.77957 1.21130 1.21633 1.19922 1.60609 1.57512 1.08298 1.02309 1.21450 0.96933 0.93884 0.89697 0.95050 1.21878 0.97762 0.99620 1.00497 1.21308 0.98683 0.96225 0.94168 1.21609 1.02777 0.97874 0.93162 1.22110 0.98205 0.98598 0.99199 1.21556 0.80602 0.92691 0.99603 1.92795 1.47191 1.81541 1.97870 1.22175 1.03035 0.98025 0.95244 1.21539 0.99056 0.97978 0.96348 0.93159 0.92661 0.94542 0.96722 0.96628 0.93460 0.85353 0.92620 0.91676 0.93635 0.91874 0.90744 0.91954 0.90503 0.91270 0.90710 0.90611 0.91065 0.89897 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 9.15 37.16 0.34 -2.69 16 2 C 0.09 1.79 2.34 -67.72 -0.16 1.63 16 3 H 0.06 1.33 7.11 -51.93 -0.37 0.96 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.48 -13.64 8.84 -34.44 -0.30 -13.94 16 6 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.74 13.29 55.43 0.74 -27.01 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.66 -11.87 5.05 -99.75 -0.50 -12.37 16 14 C 0.09 1.36 2.25 -67.71 -0.15 1.21 16 15 H 0.03 0.48 7.11 -51.93 -0.37 0.11 16 16 C -0.14 -2.24 8.69 37.16 0.32 -1.91 16 17 C -0.08 -1.05 1.87 -90.62 -0.17 -1.22 16 18 C -0.12 -1.27 4.73 -26.73 -0.13 -1.40 16 19 C -0.14 -1.32 5.72 -26.73 -0.15 -1.47 16 20 C 0.09 0.93 4.12 -26.73 -0.11 0.82 16 21 F -0.21 -2.79 16.05 2.25 0.04 -2.75 16 22 C -0.15 -1.56 5.72 -26.73 -0.15 -1.71 16 23 C -0.11 -1.47 4.57 -26.73 -0.12 -1.60 16 24 H 0.05 0.83 8.13 -51.93 -0.42 0.40 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.04 0.54 7.43 -51.93 -0.39 0.15 16 27 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.33 5.58 7.93 -39.29 -0.31 5.27 16 31 H 0.05 0.99 7.43 -51.93 -0.39 0.60 16 32 H 0.06 1.13 6.43 -51.93 -0.33 0.79 16 33 H 0.04 0.62 6.43 -51.93 -0.33 0.29 16 34 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.07 0.90 6.09 -51.93 -0.32 0.59 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.23 7.48 -51.93 -0.39 0.84 16 43 H 0.07 1.09 6.09 -51.93 -0.32 0.77 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -30.25 328.47 -8.52 -38.77 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.70 Total: 1.24 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: -1.01 Total: -20.23 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.23 Total: -39.38 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.25 -8.52 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595820778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.446 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds