Wall clock time and date at job start Mon Mar 30 2020 06:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46607 * 2 1 4 4 C 1.53001 * 109.46963 * 119.99685 * 2 1 3 5 5 C 1.50696 * 109.47255 * 185.00190 * 4 2 1 6 6 H 1.08001 * 119.99740 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00382 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00371 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47520 * 89.99738 * 9 7 5 11 11 H 1.48501 * 109.47177 * 209.99802 * 9 7 5 12 12 H 1.48499 * 109.46931 * 329.99606 * 9 7 5 13 13 N 1.46888 * 109.47169 * 240.00068 * 2 1 3 14 14 C 1.46896 * 111.00372 * 85.00030 * 13 2 1 15 15 H 1.09000 * 109.47017 * 324.99780 * 14 13 2 16 16 C 1.52997 * 109.47234 * 84.99806 * 14 13 2 17 17 C 1.53006 * 109.47501 * 204.99926 * 14 13 2 18 18 C 1.52999 * 109.47000 * 180.02562 * 17 14 13 19 19 C 1.53006 * 109.46626 * 180.02562 * 18 17 14 20 20 C 1.52997 * 109.47127 * 299.99539 * 19 18 17 21 21 F 1.39901 * 109.47234 * 300.00554 * 20 19 18 22 22 C 1.53002 * 109.46817 * 60.00361 * 20 19 18 23 23 C 1.52996 * 109.46972 * 299.99733 * 22 20 19 24 24 H 1.09003 * 109.47118 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47152 * 300.00056 * 1 2 3 26 26 H 1.09006 * 109.46749 * 60.00248 * 1 2 3 27 27 H 1.09004 * 109.47150 * 305.00090 * 4 2 1 28 28 H 1.09002 * 109.47207 * 65.00220 * 4 2 1 29 29 H 0.96996 * 120.00081 * 180.02562 * 8 7 5 30 30 H 1.00899 * 111.00269 * 321.04044 * 13 2 1 31 31 H 1.09002 * 109.47045 * 300.00141 * 16 14 13 32 32 H 1.09000 * 109.47140 * 60.00049 * 16 14 13 33 33 H 1.09001 * 109.47375 * 180.02562 * 16 14 13 34 34 H 1.08993 * 109.46765 * 59.99547 * 17 14 13 35 35 H 1.08993 * 109.47839 * 60.00073 * 18 17 14 36 36 H 1.09000 * 109.47160 * 299.99635 * 18 17 14 37 37 H 1.09001 * 109.46801 * 59.99811 * 19 18 17 38 38 H 1.09001 * 109.46998 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.47407 * 60.00219 * 22 20 19 41 41 H 1.09000 * 109.46986 * 179.97438 * 22 20 19 42 42 H 1.09001 * 109.46993 * 180.02562 * 23 22 20 43 43 H 1.09000 * 109.47380 * 299.99696 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3129 6 1 4.0789 -0.0854 0.5397 7 6 4.2304 -1.1934 2.3579 8 7 3.5764 -1.8377 3.2996 9 14 6.0920 -1.0609 2.4371 10 1 6.4697 0.1612 3.1913 11 1 6.6446 -2.2565 3.1230 12 1 6.6416 -0.9823 1.0598 13 7 2.0197 -0.6924 -1.1993 14 6 2.0825 0.2226 -2.3468 15 1 1.2576 0.9329 -2.2907 16 6 3.4111 0.9809 -2.3223 17 6 1.9771 -0.5797 -3.6454 18 6 2.0432 0.3733 -4.8404 19 6 1.9372 -0.4290 -6.1390 20 6 3.0943 -1.4268 -6.2178 21 9 4.3096 -0.7343 -6.1954 22 6 3.0282 -2.3798 -5.0227 23 6 3.1342 -1.5775 -3.7243 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6053 -0.2616 2.1370 28 1 1.7517 -1.7715 1.2057 29 1 4.0607 -2.2444 4.0351 30 1 1.4497 -1.4979 -1.4099 31 1 3.4862 1.5525 -1.3972 32 1 4.2360 0.2706 -2.3784 33 1 3.4576 1.6602 -3.1735 34 1 1.0306 -1.1199 -3.6628 35 1 2.9899 0.9132 -4.8228 36 1 1.2186 1.0840 -4.7845 37 1 0.9902 -0.9685 -6.1563 38 1 1.9838 0.2500 -6.9904 39 1 3.0190 -1.9981 -7.1431 40 1 2.0813 -2.9194 -5.0401 41 1 3.8523 -3.0910 -5.0791 42 1 3.0876 -2.2565 -2.8728 43 1 4.0812 -1.0380 -3.7068 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595820778.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:20 Heat of formation + Delta-G solvation = -103.335093 kcal Electronic energy + Delta-G solvation = -20455.615345 eV Core-core repulsion = 17447.718170 eV Total energy + Delta-G solvation = -3007.897174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.52269 -40.02977 -37.64727 -35.00629 -33.65383 -31.77956 -30.16794 -29.26521 -28.67589 -25.23510 -24.37671 -23.65221 -21.46016 -21.14084 -19.89359 -18.36832 -17.36467 -16.63267 -16.50439 -16.46651 -16.19058 -15.94282 -15.22184 -14.63724 -14.31013 -14.23006 -14.19413 -13.78212 -13.52978 -13.28968 -13.19633 -13.05900 -12.89730 -12.70689 -12.52262 -12.49179 -12.39983 -12.35656 -12.01114 -11.67764 -11.58353 -11.24594 -11.11327 -11.06299 -10.83896 -10.73828 -10.46293 -8.89935 -8.07890 -6.11378 1.40095 1.41097 1.52558 2.47900 3.23998 3.41727 3.65833 3.71765 3.78789 3.98872 4.11079 4.22557 4.30149 4.35777 4.47571 4.49654 4.57312 4.58231 4.60572 4.63780 4.76820 4.87402 4.92858 5.01217 5.08073 5.13007 5.17070 5.17888 5.26693 5.29634 5.32140 5.42024 5.48547 5.50644 5.57861 5.70596 5.74606 5.93311 6.39861 6.59472 6.85245 7.03027 7.53761 9.04391 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.022156 B = 0.005566 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.434750 B = 5029.073770 C = 5749.881866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.100 3.900 3 H 0.053 0.947 4 C 0.039 3.961 5 C -0.491 4.491 6 H 0.055 0.945 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.673 5.673 14 C 0.093 3.907 15 H 0.041 0.959 16 C -0.135 4.135 17 C -0.076 4.076 18 C -0.114 4.114 19 C -0.138 4.138 20 C 0.084 3.916 21 F -0.234 7.234 22 C -0.143 4.143 23 C -0.110 4.110 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.064 0.936 27 H -0.012 1.012 28 H -0.010 1.010 29 H 0.257 0.743 30 H 0.335 0.665 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.992 2.139 -20.918 21.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 H 0.072 0.928 4 C 0.001 3.999 5 C -0.529 4.529 6 H 0.074 0.926 7 C -0.202 4.202 8 N -0.584 5.584 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.304 5.304 14 C -0.016 4.016 15 H 0.059 0.941 16 C -0.193 4.193 17 C -0.094 4.094 18 C -0.152 4.152 19 C -0.176 4.176 20 C 0.048 3.952 21 F -0.215 7.215 22 C -0.181 4.181 23 C -0.148 4.148 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.006 0.994 28 H 0.009 0.991 29 H 0.066 0.934 30 H 0.154 0.846 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.259 2.151 -20.607 21.376 hybrid contribution 0.310 0.013 0.676 0.744 sum -4.949 2.164 -19.931 20.650 Atomic orbital electron populations 1.22408 0.96893 1.01702 1.01721 1.21443 0.91845 0.96677 0.91025 0.92841 1.18983 0.95036 0.94143 0.91696 1.21479 0.93416 1.31782 1.06266 0.92632 1.25820 1.02553 0.95896 0.95940 1.70092 1.36897 1.38323 1.13111 0.85643 0.81105 0.77369 0.78072 1.20223 1.21185 1.19478 1.60412 1.57993 1.09192 1.02823 1.21482 0.96424 0.93809 0.89906 0.94062 1.21843 0.97868 0.99402 1.00212 1.21238 0.98897 0.96057 0.93252 1.21577 1.02454 0.97842 0.93357 1.22109 0.98625 0.98500 0.98358 1.21832 0.80040 0.92964 1.00334 1.92760 1.48706 1.82054 1.97966 1.22154 1.04061 0.97875 0.94008 1.21451 0.98348 0.97875 0.97132 0.92790 0.92895 0.91673 0.99379 0.99119 0.93395 0.84592 0.95001 0.93660 0.91325 0.90229 0.92375 0.90619 0.88351 0.90073 0.88020 0.88493 0.91448 0.92257 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.45 9.15 71.98 0.66 -4.79 16 2 C 0.10 4.03 2.34 44.92 0.11 4.14 16 3 H 0.05 2.25 7.11 -2.39 -0.02 2.24 16 4 C 0.04 2.06 4.65 29.85 0.14 2.19 16 5 C -0.49 -28.44 8.84 25.60 0.23 -28.21 16 6 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 7 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 8 N -0.94 -58.96 13.29 21.45 0.28 -58.67 16 9 Si 0.95 46.75 29.54 68.60 2.03 48.78 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 13 N -0.67 -24.19 5.05 -469.49 -2.37 -26.56 16 14 C 0.09 2.70 2.25 44.92 0.10 2.81 16 15 H 0.04 1.14 7.11 -2.39 -0.02 1.13 16 16 C -0.14 -4.34 8.69 71.98 0.63 -3.71 16 17 C -0.08 -1.72 1.87 -10.79 -0.02 -1.74 16 18 C -0.11 -2.17 4.73 30.60 0.14 -2.03 16 19 C -0.14 -2.02 5.72 30.60 0.17 -1.85 16 20 C 0.08 1.46 4.12 30.59 0.13 1.59 16 21 F -0.23 -5.79 16.05 44.97 0.72 -5.07 16 22 C -0.14 -2.75 5.72 30.59 0.17 -2.57 16 23 C -0.11 -2.84 4.57 30.59 0.14 -2.70 16 24 H 0.05 1.70 8.13 -2.39 -0.02 1.68 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.75 7.43 -2.38 -0.02 1.73 16 27 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 28 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.34 11.16 7.93 -89.69 -0.71 10.45 16 31 H 0.03 1.14 7.43 -2.39 -0.02 1.12 16 32 H 0.04 1.61 6.43 -2.39 -0.02 1.59 16 33 H 0.07 1.84 6.43 -2.39 -0.02 1.82 16 34 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 35 H 0.06 1.30 6.09 -2.39 -0.01 1.29 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 39 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 1.78 7.48 -2.39 -0.02 1.76 16 43 H 0.05 1.46 6.09 -2.39 -0.01 1.45 16 Total: -1.00 -66.81 328.47 3.97 -62.84 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.26 Total: 15.49 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 3.06 Total: -36.80 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -2.09 Total: -85.23 kcal Atomic # 9 Polarization: -5.79 SS G_CDS: 0.72 Total: -5.07 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -66.81 3.97 -62.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595820778.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.497 kcal (2) G-P(sol) polarization free energy of solvation -66.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds