Wall clock time and date at job start Mon Mar 30 2020 06:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46877 * 2 1 4 4 N 1.46896 * 109.47633 * 120.00215 * 2 1 3 5 5 C 1.46904 * 110.99850 * 274.99884 * 4 2 1 6 6 C 1.53002 * 109.46818 * 179.97438 * 5 4 2 7 7 C 1.53006 * 109.46800 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.46720 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00725 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00045 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99460 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00388 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47148 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47036 * 119.99777 * 12 10 8 15 15 H 1.48498 * 109.47245 * 240.00167 * 12 10 8 16 16 C 1.53002 * 109.47005 * 240.00527 * 2 1 3 17 17 C 1.52997 * 109.46817 * 304.99460 * 16 2 1 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 2 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 F 1.39900 * 109.46972 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 22 22 C 1.53000 * 109.47233 * 64.99266 * 16 2 1 23 23 H 1.09003 * 109.46952 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47027 * 299.99508 * 1 2 3 25 25 H 1.08997 * 109.47805 * 60.00035 * 1 2 3 26 26 H 1.00906 * 110.99670 * 38.95289 * 4 2 1 27 27 H 1.08997 * 109.47107 * 300.00130 * 5 4 2 28 28 H 1.09004 * 109.46949 * 60.00337 * 5 4 2 29 29 H 1.08997 * 109.47871 * 300.00254 * 6 5 4 30 30 H 1.09004 * 109.46601 * 60.00716 * 6 5 4 31 31 H 1.09002 * 109.47011 * 300.00254 * 7 6 5 32 32 H 1.08993 * 109.46744 * 60.00225 * 7 6 5 33 33 H 0.97000 * 119.99960 * 179.97438 * 11 10 8 34 34 H 1.09002 * 109.47070 * 184.99640 * 16 2 1 35 35 H 1.08996 * 109.47853 * 300.00202 * 17 16 2 36 36 H 1.09002 * 109.47153 * 60.00231 * 17 16 2 37 37 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 38 38 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 39 39 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 40 40 H 1.08993 * 109.47194 * 179.97438 * 21 19 18 41 41 H 1.09002 * 109.46695 * 59.99734 * 21 19 18 42 42 H 1.08992 * 109.47399 * 300.00166 * 22 16 2 43 43 H 1.09004 * 109.46724 * 60.00652 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0198 -0.6925 1.1993 5 6 2.0826 0.2226 2.3468 6 6 2.5953 -0.5332 3.5743 7 6 2.6602 0.4197 4.7696 8 6 3.1657 -0.3246 5.9785 9 1 3.4154 -1.3725 5.9021 10 6 3.3086 0.3321 7.1825 11 7 3.0041 1.6081 7.2756 12 14 3.9346 -0.5906 8.6811 13 1 4.2045 -2.0043 8.3151 14 1 5.1877 0.0428 9.1647 15 1 2.9099 -0.5439 9.7549 16 6 2.0400 -0.7211 -1.2493 17 6 1.4300 -2.1228 -1.3138 18 6 1.9394 -2.8438 -2.5634 19 6 1.5340 -2.0533 -3.8091 20 9 2.0003 -2.7123 -4.9517 21 6 2.1440 -0.6517 -3.7447 22 6 1.6350 0.0690 -2.4954 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.4496 -1.4980 1.4099 27 1 2.7589 1.0462 2.1181 28 1 1.0872 0.6162 2.5526 29 1 1.9187 -1.3566 3.8029 30 1 3.5907 -0.9271 3.3688 31 1 3.3366 1.2434 4.5413 32 1 1.6647 0.8133 4.9749 33 1 3.1042 2.0700 8.1227 34 1 3.1263 -0.7993 -1.2057 35 1 1.7183 -2.6858 -0.4261 36 1 0.3436 -2.0446 -1.3574 37 1 1.5044 -3.8422 -2.6095 38 1 3.0257 -2.9219 -2.5202 39 1 0.4477 -1.9752 -3.8523 40 1 1.8557 -0.0888 -4.6324 41 1 3.2304 -0.7299 -3.7015 42 1 0.5488 0.1472 -2.5390 43 1 2.0697 1.0676 -2.4494 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595821458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:10 Heat of formation + Delta-G solvation = -97.844565 kcal Electronic energy + Delta-G solvation = -19299.032565 eV Core-core repulsion = 16291.373478 eV Total energy + Delta-G solvation = -3007.659087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.82226 -39.33113 -36.31541 -33.87668 -32.15550 -31.16617 -29.96763 -28.11467 -25.97375 -23.81308 -23.20643 -22.16256 -21.04003 -20.15335 -19.21382 -16.48110 -16.29748 -15.98850 -15.43238 -15.30956 -14.94257 -14.76067 -14.38078 -13.94605 -13.77640 -13.56253 -12.92695 -12.70379 -12.50376 -12.23544 -12.00647 -11.92176 -11.80943 -11.53873 -11.43530 -11.09352 -10.89086 -10.85526 -10.69814 -10.56256 -10.49496 -10.23483 -10.14108 -9.68610 -9.30633 -9.02100 -8.33550 -8.11518 -5.98611 -4.00495 3.31966 3.39319 3.43934 4.19117 4.24227 4.36216 4.40451 4.48812 4.66010 4.76446 4.98681 5.02493 5.11822 5.17102 5.24674 5.28963 5.37308 5.40730 5.47601 5.61977 5.71348 5.72753 5.84730 5.85697 5.89055 5.91820 5.96374 6.02565 6.10079 6.20087 6.34632 6.37703 6.74416 6.80491 7.15670 7.38936 7.66364 7.70554 7.85447 8.02199 8.45644 9.07110 9.63513 11.12915 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.047147 B = 0.002994 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.740785 B = 9349.696534 C = 9649.299980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.087 3.913 3 H 0.076 0.924 4 N -0.685 5.685 5 C 0.059 3.941 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.078 4.078 17 C -0.113 4.113 18 C -0.144 4.144 19 C 0.090 3.910 20 F -0.220 7.220 21 C -0.143 4.143 22 C -0.114 4.114 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.337 0.663 27 H 0.065 0.935 28 H 0.024 0.976 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.259 0.741 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 -4.724 -21.906 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.024 4.024 3 H 0.094 0.906 4 N -0.315 5.315 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.016 4.016 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.097 4.097 17 C -0.150 4.150 18 C -0.182 4.182 19 C 0.054 3.946 20 F -0.200 7.200 21 C -0.181 4.181 22 C -0.152 4.152 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.155 0.845 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.659 -4.513 -21.963 22.901 hybrid contribution -0.635 -0.290 1.071 1.279 sum -5.294 -4.804 -20.892 22.081 Atomic orbital electron populations 1.22623 0.97776 1.02121 1.02059 1.21536 0.92296 0.97892 0.90632 0.90602 1.60658 1.56733 1.10016 1.04117 1.22145 0.98992 0.95442 0.90341 1.21621 1.00041 0.98893 0.93941 1.19066 0.96966 0.94349 0.91201 1.21305 1.43325 0.96443 0.94526 0.92630 1.25040 0.95665 0.94890 0.98995 1.69980 1.49069 1.09025 1.25580 0.86543 0.78502 0.80079 0.82928 1.19712 1.21018 1.21064 1.21196 1.01246 0.94245 0.92979 1.21583 1.00280 0.95936 0.97242 1.22125 1.02707 0.99247 0.94090 1.21646 0.98960 0.91961 0.82048 1.92798 1.90910 1.82973 1.53362 1.22094 1.01905 0.94830 0.99256 1.21580 1.01269 0.99084 0.93283 0.92193 0.92638 0.92219 0.84549 0.91610 0.95817 0.93758 0.92606 0.96621 0.96869 0.93110 0.90126 0.90418 0.91720 0.91090 0.90710 0.90250 0.91077 0.90724 0.91504 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 8.43 37.16 0.31 -1.54 16 2 C 0.09 0.96 2.37 -67.71 -0.16 0.80 16 3 H 0.08 0.90 7.80 -51.92 -0.40 0.50 16 4 N -0.69 -9.40 5.91 -106.72 -0.63 -10.03 16 5 C 0.06 1.01 5.48 -3.82 -0.02 0.98 16 6 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 7 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 8 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 9 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 10 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 12 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 C -0.08 -0.73 2.17 -90.62 -0.20 -0.92 16 17 C -0.11 -0.97 4.53 -26.73 -0.12 -1.10 16 18 C -0.14 -1.21 5.66 -26.73 -0.15 -1.36 16 19 C 0.09 0.76 3.88 -26.73 -0.10 0.66 16 20 F -0.22 -2.38 17.08 2.25 0.04 -2.35 16 21 C -0.14 -1.12 5.66 -26.76 -0.15 -1.27 16 22 C -0.11 -0.89 4.96 -26.76 -0.13 -1.03 16 23 H 0.06 0.55 6.33 -51.93 -0.33 0.22 16 24 H 0.05 0.63 7.45 -51.93 -0.39 0.24 16 25 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 26 H 0.34 4.38 7.80 -39.29 -0.31 4.07 16 27 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16 28 H 0.02 0.40 7.44 -51.93 -0.39 0.02 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.74 7.33 -51.93 -0.38 0.36 16 36 H 0.06 0.51 6.35 -51.93 -0.33 0.19 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -29.98 332.52 -9.10 -39.08 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.82 Total: -1.67 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.42 Total: -20.38 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.11 Total: -36.52 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.98 -9.10 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595821458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.766 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds