Wall clock time and date at job start Mon Mar 30 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52499 * 2 1 4 4 C 1.53116 * 109.52575 * 120.13066 * 2 1 3 5 5 C 1.53044 * 109.27742 * 177.61955 * 4 2 1 6 6 N 1.46850 * 109.52277 * 300.81880 * 5 4 2 7 7 C 1.46893 * 110.99825 * 185.84250 * 6 5 4 8 8 C 1.52999 * 109.47256 * 148.66045 * 7 6 5 9 9 C 1.52998 * 109.47213 * 67.23560 * 8 7 6 10 10 C 1.52992 * 109.47227 * 307.23233 * 8 7 6 11 11 C 1.53006 * 109.46996 * 187.23145 * 8 7 6 12 12 C 1.50700 * 109.46818 * 179.97438 * 11 8 7 13 13 H 1.07999 * 120.00459 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99966 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00051 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99986 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46894 * 60.00450 * 16 14 12 18 18 H 1.48505 * 109.46917 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47258 * 300.00392 * 16 14 12 20 20 C 1.46841 * 111.19613 * 61.74254 * 6 5 4 21 21 C 1.53040 * 109.52479 * 298.25380 * 20 6 5 22 22 H 1.09005 * 109.50094 * 179.11803 * 21 20 6 23 23 F 1.39893 * 109.53641 * 299.22027 * 21 20 6 24 24 H 1.09003 * 109.46628 * 299.87066 * 1 2 3 25 25 H 1.08993 * 109.47774 * 59.86816 * 1 2 3 26 26 H 1.08998 * 109.47271 * 179.87845 * 1 2 3 27 27 H 1.08996 * 109.50633 * 57.68090 * 4 2 1 28 28 H 1.08999 * 109.53207 * 297.57992 * 4 2 1 29 29 H 1.09003 * 109.45965 * 180.80150 * 5 4 2 30 30 H 1.08997 * 109.44974 * 60.82925 * 5 4 2 31 31 H 1.09005 * 109.47611 * 28.65918 * 7 6 5 32 32 H 1.09004 * 109.47385 * 268.66059 * 7 6 5 33 33 H 1.08999 * 109.47501 * 153.15649 * 9 8 7 34 34 H 1.09002 * 109.46853 * 273.16138 * 9 8 7 35 35 H 1.09000 * 109.47279 * 33.15694 * 9 8 7 36 36 H 1.09002 * 109.47102 * 300.00522 * 10 8 7 37 37 H 1.09005 * 109.47139 * 59.99413 * 10 8 7 38 38 H 1.08993 * 109.47366 * 179.97438 * 10 8 7 39 39 H 1.08998 * 109.46671 * 60.00381 * 11 8 7 40 40 H 1.09000 * 109.47385 * 299.99747 * 11 8 7 41 41 H 0.96997 * 120.00408 * 179.97438 * 15 14 12 42 42 H 1.08998 * 109.46685 * 58.27479 * 20 6 5 43 43 H 1.09005 * 109.45994 * 178.23788 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 1.2481 5 6 3.5710 -0.7732 1.2126 6 7 4.0115 -1.4767 0.0013 7 6 5.4684 -1.6644 0.0020 8 6 5.8163 -2.9589 -0.7355 9 6 5.4775 -2.8072 -2.2197 10 6 5.0089 -4.1158 -0.1437 11 6 7.3108 -3.2483 -0.5806 12 6 7.6533 -4.5238 -1.3065 13 1 6.8824 -5.0729 -1.8267 14 6 8.9511 -4.9892 -1.3075 15 7 9.8901 -4.3204 -0.6746 16 14 9.3756 -6.5706 -2.2067 17 1 9.0457 -6.4247 -3.6472 18 1 10.8261 -6.8514 -2.0565 19 1 8.5923 -7.6931 -1.6308 20 6 3.5720 -0.7736 -1.2106 21 6 2.0428 -0.7249 -1.2475 22 1 1.7173 -0.1892 -2.1393 23 9 1.5338 -2.0276 -1.2732 24 1 -0.3633 0.5118 0.8912 25 1 -0.3634 0.5158 -0.8887 26 1 -0.3634 -1.0276 -0.0022 27 1 1.6457 -1.7397 1.2677 28 1 1.7153 -0.1891 2.1397 29 1 3.9380 -1.3009 2.0930 30 1 3.9665 0.2425 1.2069 31 1 5.8267 -1.7242 1.0298 32 1 5.9436 -0.8214 -0.4998 33 1 6.1175 -3.4651 -2.8077 34 1 4.4335 -3.0746 -2.3832 35 1 5.6400 -1.7738 -2.5258 36 1 5.2503 -4.2239 0.9138 37 1 3.9442 -3.9096 -0.2539 38 1 5.2563 -5.0380 -0.6693 39 1 7.5522 -3.3564 0.4768 40 1 7.8861 -2.4241 -1.0023 41 1 10.8030 -4.6480 -0.6749 42 1 3.9677 0.2420 -1.2050 43 1 3.9399 -1.3016 -2.0904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611521405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:00 Heat of formation + Delta-G solvation = -70.996992 kcal Electronic energy + Delta-G solvation = -20714.166235 eV Core-core repulsion = 17707.671346 eV Total energy + Delta-G solvation = -3006.494889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.39025 -38.95313 -36.46330 -33.76200 -32.08264 -30.57693 -28.45175 -26.86567 -26.25733 -25.06320 -23.04063 -22.78609 -21.57588 -19.56982 -17.86990 -16.38390 -16.10804 -15.61155 -15.53166 -14.98707 -14.59689 -14.29603 -13.75997 -13.46142 -13.28917 -12.88359 -12.76068 -12.46225 -12.32143 -12.03246 -11.97656 -11.89056 -11.57832 -11.21457 -10.95756 -10.81251 -10.72329 -10.66466 -10.38172 -10.29686 -10.23932 -10.15478 -9.83391 -9.55395 -8.91457 -8.81564 -8.27214 -7.92039 -5.92313 -3.91849 3.38009 3.42201 3.45078 4.08302 4.43233 4.52805 4.54536 4.66303 4.80625 5.13122 5.28280 5.32701 5.36332 5.43242 5.48135 5.54063 5.65131 5.72061 5.82801 5.85461 5.91096 5.94942 6.00610 6.09821 6.14052 6.27548 6.36359 6.40778 6.59651 6.81827 6.87778 6.95969 7.28670 7.30592 7.36273 7.44240 7.54327 7.76116 7.91740 8.08341 8.53752 9.13457 9.70515 11.19379 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.043246 B = 0.004705 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.304218 B = 5949.855089 C = 6196.279737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 H 0.079 0.921 4 C -0.111 4.111 5 C 0.053 3.947 6 N -0.523 5.523 7 C 0.066 3.934 8 C -0.052 4.052 9 C -0.134 4.134 10 C -0.113 4.113 11 C 0.034 3.966 12 C -0.505 4.505 13 H 0.059 0.941 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.015 3.985 21 C 0.103 3.897 22 H 0.078 0.922 23 F -0.201 7.201 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.027 0.973 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.013 0.987 40 H 0.011 0.989 41 H 0.259 0.741 42 H 0.041 0.959 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.290 10.275 1.480 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.139 4.139 3 H 0.098 0.902 4 C -0.149 4.149 5 C -0.076 4.076 6 N -0.248 5.248 7 C -0.060 4.060 8 C -0.052 4.052 9 C -0.191 4.191 10 C -0.170 4.170 11 C -0.004 4.004 12 C -0.544 4.544 13 H 0.077 0.923 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.113 4.113 21 C 0.067 3.933 22 H 0.096 0.904 23 F -0.182 7.182 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.030 0.970 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.327 9.780 1.530 19.093 hybrid contribution 0.815 -0.006 -0.429 0.921 sum -15.512 9.774 1.101 18.367 Atomic orbital electron populations 1.21786 0.94450 1.02590 1.01587 1.21776 0.96620 0.99779 0.95689 0.90243 1.21619 0.95293 1.01585 0.96376 1.22165 0.95107 0.96371 0.93915 1.61862 1.14316 1.48125 1.00454 1.22380 0.84672 0.98235 1.00761 1.20566 0.98473 0.92496 0.93682 1.22006 0.99948 0.99855 0.97273 1.21585 0.98411 0.97863 0.99186 1.19144 0.87973 0.96417 0.96860 1.21207 0.93445 1.07751 1.31958 0.92283 1.25008 0.96702 0.97052 0.95796 1.69955 1.01416 1.39211 1.43307 0.86733 0.77129 0.84259 0.80325 1.20359 1.21489 1.20308 1.23058 0.93915 0.97882 0.96477 1.21574 0.93666 0.79744 0.98338 0.90423 1.92806 1.88322 1.39364 1.97663 0.92442 0.92764 0.91884 0.90443 0.91591 0.90507 0.95489 0.91640 0.94888 0.91171 0.94012 0.94873 0.94669 0.93279 0.92996 0.96839 0.97035 0.93164 0.94056 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.07 37.16 0.34 -0.94 16 2 C -0.12 -1.20 2.64 -90.50 -0.24 -1.44 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.11 -1.21 5.25 -26.65 -0.14 -1.35 16 5 C 0.05 0.67 5.35 -3.83 -0.02 0.65 16 6 N -0.52 -7.86 3.37 -234.67 -0.79 -8.65 16 7 C 0.07 1.16 4.20 -3.83 -0.02 1.15 16 8 C -0.05 -1.05 0.61 -154.51 -0.09 -1.15 16 9 C -0.13 -2.59 7.14 37.16 0.27 -2.32 16 10 C -0.11 -2.30 7.83 37.15 0.29 -2.01 16 11 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 12 C -0.51 -13.98 7.27 -34.44 -0.25 -14.23 16 13 H 0.06 1.60 5.98 -52.49 -0.31 1.29 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 16 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.02 0.20 4.77 -3.84 -0.02 0.18 16 21 C 0.10 1.22 3.60 -26.65 -0.10 1.12 16 22 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 23 F -0.20 -2.96 16.02 2.25 0.04 -2.93 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.62 7.75 -51.93 -0.40 0.21 16 27 H 0.08 0.97 7.91 -51.93 -0.41 0.56 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 1.16 7.61 -51.93 -0.39 0.77 16 32 H 0.03 0.57 7.63 -51.93 -0.40 0.18 16 33 H 0.07 1.51 6.26 -51.93 -0.32 1.19 16 34 H 0.04 0.75 7.04 -51.93 -0.37 0.39 16 35 H 0.03 0.58 6.72 -51.93 -0.35 0.23 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.94 7.39 -51.93 -0.38 0.56 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 1.51 4.25 -51.93 -0.22 1.29 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -29.63 323.55 -8.03 -37.66 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -7.68 Total: -3.30 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -0.19 Total: -18.14 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.05 Total: -34.97 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.63 -8.03 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611521405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.335 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds