Wall clock time and date at job start Mon Mar 30 2020 06:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.52499 * 2 1 4 4 C 1.53116 * 109.52575 * 120.13066 * 2 1 3 5 5 C 1.53044 * 109.27742 * 177.61955 * 4 2 1 6 6 N 1.46850 * 109.52277 * 300.81880 * 5 4 2 7 7 C 1.46893 * 110.99825 * 185.84250 * 6 5 4 8 8 C 1.52999 * 109.47256 * 148.66045 * 7 6 5 9 9 C 1.52998 * 109.47213 * 67.23560 * 8 7 6 10 10 C 1.52992 * 109.47227 * 307.23233 * 8 7 6 11 11 C 1.53006 * 109.46996 * 187.23145 * 8 7 6 12 12 C 1.50700 * 109.46818 * 179.97438 * 11 8 7 13 13 H 1.07999 * 120.00459 * 0.02562 * 12 11 8 14 14 C 1.37878 * 119.99966 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00051 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99986 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46894 * 60.00450 * 16 14 12 18 18 H 1.48505 * 109.46917 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47258 * 300.00392 * 16 14 12 20 20 C 1.46841 * 111.19613 * 61.74254 * 6 5 4 21 21 C 1.53040 * 109.52479 * 298.25380 * 20 6 5 22 22 H 1.09005 * 109.50094 * 179.11803 * 21 20 6 23 23 F 1.39893 * 109.53641 * 299.22027 * 21 20 6 24 24 H 1.09003 * 109.46628 * 299.87066 * 1 2 3 25 25 H 1.08993 * 109.47774 * 59.86816 * 1 2 3 26 26 H 1.08998 * 109.47271 * 179.87845 * 1 2 3 27 27 H 1.08996 * 109.50633 * 57.68090 * 4 2 1 28 28 H 1.08999 * 109.53207 * 297.57992 * 4 2 1 29 29 H 1.09003 * 109.45965 * 180.80150 * 5 4 2 30 30 H 1.08997 * 109.44974 * 60.82925 * 5 4 2 31 31 H 1.09005 * 109.47611 * 28.65918 * 7 6 5 32 32 H 1.09004 * 109.47385 * 268.66059 * 7 6 5 33 33 H 1.08999 * 109.47501 * 153.15649 * 9 8 7 34 34 H 1.09002 * 109.46853 * 273.16138 * 9 8 7 35 35 H 1.09000 * 109.47279 * 33.15694 * 9 8 7 36 36 H 1.09002 * 109.47102 * 300.00522 * 10 8 7 37 37 H 1.09005 * 109.47139 * 59.99413 * 10 8 7 38 38 H 1.08993 * 109.47366 * 179.97438 * 10 8 7 39 39 H 1.08998 * 109.46671 * 60.00381 * 11 8 7 40 40 H 1.09000 * 109.47385 * 299.99747 * 11 8 7 41 41 H 0.96997 * 120.00408 * 179.97438 * 15 14 12 42 42 H 1.08998 * 109.46685 * 58.27479 * 20 6 5 43 43 H 1.09005 * 109.45994 * 178.23788 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7244 1.2481 5 6 3.5710 -0.7732 1.2126 6 7 4.0115 -1.4767 0.0013 7 6 5.4684 -1.6644 0.0020 8 6 5.8163 -2.9589 -0.7355 9 6 5.4775 -2.8072 -2.2197 10 6 5.0089 -4.1158 -0.1437 11 6 7.3108 -3.2483 -0.5806 12 6 7.6533 -4.5238 -1.3065 13 1 6.8824 -5.0729 -1.8267 14 6 8.9511 -4.9892 -1.3075 15 7 9.8901 -4.3204 -0.6746 16 14 9.3756 -6.5706 -2.2067 17 1 9.0457 -6.4247 -3.6472 18 1 10.8261 -6.8514 -2.0565 19 1 8.5923 -7.6931 -1.6308 20 6 3.5720 -0.7736 -1.2106 21 6 2.0428 -0.7249 -1.2475 22 1 1.7173 -0.1892 -2.1393 23 9 1.5338 -2.0276 -1.2732 24 1 -0.3633 0.5118 0.8912 25 1 -0.3634 0.5158 -0.8887 26 1 -0.3634 -1.0276 -0.0022 27 1 1.6457 -1.7397 1.2677 28 1 1.7153 -0.1891 2.1397 29 1 3.9380 -1.3009 2.0930 30 1 3.9665 0.2425 1.2069 31 1 5.8267 -1.7242 1.0298 32 1 5.9436 -0.8214 -0.4998 33 1 6.1175 -3.4651 -2.8077 34 1 4.4335 -3.0746 -2.3832 35 1 5.6400 -1.7738 -2.5258 36 1 5.2503 -4.2239 0.9138 37 1 3.9442 -3.9096 -0.2539 38 1 5.2563 -5.0380 -0.6693 39 1 7.5522 -3.3564 0.4768 40 1 7.8861 -2.4241 -1.0023 41 1 10.8030 -4.6480 -0.6749 42 1 3.9677 0.2420 -1.2050 43 1 3.9399 -1.3016 -2.0904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611521405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:59 Heat of formation + Delta-G solvation = -86.876661 kcal Electronic energy + Delta-G solvation = -20714.854829 eV Core-core repulsion = 17707.671346 eV Total energy + Delta-G solvation = -3007.183483 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.40730 -40.17325 -37.86536 -35.13732 -33.95962 -31.56407 -29.64253 -28.75804 -27.88596 -26.46207 -24.55971 -24.01175 -22.67882 -20.48509 -19.55847 -18.29855 -17.35861 -16.68515 -16.56858 -16.49970 -16.02083 -15.60274 -15.05481 -14.82055 -14.60981 -14.25025 -13.94927 -13.92600 -13.60824 -13.48967 -13.36711 -12.98453 -12.80222 -12.67974 -12.52049 -12.28331 -12.24884 -12.06307 -12.01246 -11.84983 -11.70755 -11.32857 -11.25225 -11.01613 -10.87498 -10.54779 -10.48345 -9.10972 -8.12852 -6.19322 1.41162 1.43430 1.50769 2.44544 2.95245 3.20755 3.60810 3.65550 3.84501 3.90412 4.08880 4.20733 4.28575 4.40422 4.44865 4.50940 4.60747 4.61972 4.71603 4.80122 4.88114 4.88636 4.93260 4.97745 4.99539 5.07192 5.13601 5.18881 5.23158 5.25383 5.33073 5.52027 5.52555 5.56787 5.64377 5.70189 5.89147 5.94530 6.15346 6.29191 6.40162 6.94969 7.47412 8.99197 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.043246 B = 0.004705 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.304218 B = 5949.855089 C = 6196.279737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 H 0.098 0.902 4 C -0.106 4.106 5 C 0.051 3.949 6 N -0.534 5.534 7 C 0.078 3.922 8 C -0.049 4.049 9 C -0.122 4.122 10 C -0.101 4.101 11 C 0.042 3.958 12 C -0.514 4.514 13 H 0.063 0.937 14 C -0.002 4.002 15 N -0.937 5.937 16 Si 0.954 3.046 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.270 1.270 20 C 0.012 3.988 21 C 0.098 3.902 22 H 0.103 0.897 23 F -0.220 7.220 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.047 0.953 36 H 0.027 0.973 37 H 0.062 0.938 38 H 0.033 0.967 39 H -0.016 1.016 40 H -0.014 1.014 41 H 0.260 0.740 42 H 0.057 0.943 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.100 11.105 0.967 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.116 0.884 4 C -0.144 4.144 5 C -0.077 4.077 6 N -0.258 5.258 7 C -0.050 4.050 8 C -0.050 4.050 9 C -0.179 4.179 10 C -0.158 4.158 11 C 0.004 3.996 12 C -0.552 4.552 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.578 5.578 16 Si 0.780 3.220 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.116 4.116 21 C 0.062 3.938 22 H 0.121 0.879 23 F -0.201 7.201 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.002 0.998 40 H 0.004 0.996 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.163 10.613 1.013 21.061 hybrid contribution 1.366 -0.222 -0.242 1.406 sum -16.797 10.391 0.770 19.766 Atomic orbital electron populations 1.21752 0.93358 1.02018 1.02896 1.21786 0.97465 1.00161 0.94036 0.88422 1.21589 0.93652 1.01065 0.98072 1.22231 0.96464 0.96533 0.92457 1.61758 1.12108 1.49766 1.02188 1.22075 0.86849 0.96406 0.99669 1.20440 0.94961 0.94332 0.95229 1.21873 1.00122 1.00224 0.95700 1.21454 0.99082 0.96893 0.98362 1.19007 0.91295 0.94902 0.94375 1.21565 0.93655 1.08389 1.31636 0.91940 1.25879 0.96737 1.00538 0.96713 1.70092 1.01780 1.41085 1.44885 0.85662 0.76881 0.80097 0.79397 1.19296 1.21190 1.19524 1.23100 0.95324 0.98238 0.94980 1.21823 0.92327 0.79144 1.00515 0.87903 1.92769 1.88486 1.41011 1.97848 0.91062 0.91594 0.93374 0.92349 0.89397 0.91230 0.94306 0.92434 0.94862 0.93774 0.92535 0.93362 0.95383 0.91867 0.94798 0.99784 0.99589 0.93145 0.92505 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.07 71.98 0.65 -1.40 16 2 C -0.12 -1.94 2.64 -10.71 -0.03 -1.97 16 3 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.11 -2.06 5.25 30.65 0.16 -1.90 16 5 C 0.05 1.19 5.35 86.33 0.46 1.66 16 6 N -0.53 -15.30 3.37 -896.35 -3.02 -18.32 16 7 C 0.08 2.70 4.20 86.30 0.36 3.07 16 8 C -0.05 -2.02 0.61 -52.18 -0.03 -2.05 16 9 C -0.12 -4.68 7.14 71.98 0.51 -4.16 16 10 C -0.10 -4.11 7.83 71.98 0.56 -3.54 16 11 C 0.04 2.20 4.04 29.85 0.12 2.32 16 12 C -0.51 -29.04 7.27 25.60 0.19 -28.86 16 13 H 0.06 3.42 5.98 -2.91 -0.02 3.41 16 14 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 15 N -0.94 -57.72 13.29 21.45 0.28 -57.44 16 16 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 C 0.01 0.29 4.77 86.33 0.41 0.70 16 21 C 0.10 2.04 3.60 30.65 0.11 2.16 16 22 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 23 F -0.22 -6.11 16.02 44.97 0.72 -5.39 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.05 0.84 7.75 -2.39 -0.02 0.82 16 27 H 0.06 1.37 7.91 -2.39 -0.02 1.35 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.72 7.90 -2.39 -0.02 1.70 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 2.06 7.61 -2.38 -0.02 2.05 16 32 H 0.03 1.14 7.63 -2.38 -0.02 1.12 16 33 H 0.04 1.90 6.26 -2.39 -0.01 1.89 16 34 H 0.06 1.98 7.04 -2.39 -0.02 1.96 16 35 H 0.05 1.67 6.72 -2.39 -0.02 1.65 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 2.39 7.39 -2.38 -0.02 2.37 16 38 H 0.03 1.47 6.62 -2.39 -0.02 1.45 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 41 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 2.44 4.25 -2.38 -0.01 2.43 16 Total: -1.00 -64.48 323.55 4.91 -59.57 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 0.95 Total: 8.08 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 3.95 Total: -33.63 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -2.73 Total: -75.76 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.72 Total: -5.39 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.48 4.91 -59.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611521405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.309 kcal (2) G-P(sol) polarization free energy of solvation -64.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds