Wall clock time and date at job start Mon Mar 30 2020 06:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52278 * 2 1 4 4 C 1.53116 * 109.57462 * 120.15748 * 2 1 3 5 5 C 1.53032 * 109.27800 * 177.58913 * 4 2 1 6 6 N 1.46852 * 109.52547 * 300.81874 * 5 4 2 7 7 C 1.46898 * 110.99966 * 185.83931 * 6 5 4 8 8 C 1.53006 * 109.46972 * 182.50344 * 7 6 5 9 9 C 1.53000 * 109.46931 * 320.94441 * 8 7 6 10 10 C 1.52998 * 109.47032 * 80.94098 * 8 7 6 11 11 C 1.52991 * 109.47120 * 200.94537 * 8 7 6 12 12 C 1.50695 * 109.47377 * 179.97438 * 11 8 7 13 13 H 1.08004 * 119.99851 * 359.97438 * 12 11 8 14 14 C 1.37878 * 120.00174 * 180.02562 * 12 11 8 15 15 N 1.31511 * 120.00128 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99754 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47223 * 89.99818 * 16 14 12 18 18 H 1.48508 * 109.47061 * 209.99751 * 16 14 12 19 19 H 1.48502 * 109.47269 * 329.99658 * 16 14 12 20 20 C 1.46847 * 111.19174 * 61.74153 * 6 5 4 21 21 C 1.53029 * 109.52670 * 298.25660 * 20 6 5 22 22 H 1.09002 * 109.50615 * 299.24198 * 21 20 6 23 23 F 1.39901 * 109.50790 * 179.12549 * 21 20 6 24 24 H 1.08998 * 109.47661 * 180.12921 * 1 2 3 25 25 H 1.09004 * 109.47164 * 300.12781 * 1 2 3 26 26 H 1.09009 * 109.47378 * 60.12713 * 1 2 3 27 27 H 1.09005 * 109.50146 * 297.53208 * 4 2 1 28 28 H 1.09008 * 109.50439 * 57.64831 * 4 2 1 29 29 H 1.08997 * 109.46304 * 60.83750 * 5 4 2 30 30 H 1.09007 * 109.46500 * 180.80241 * 5 4 2 31 31 H 1.09006 * 109.46948 * 302.50077 * 7 6 5 32 32 H 1.09003 * 109.47141 * 62.50017 * 7 6 5 33 33 H 1.09000 * 109.46956 * 59.99881 * 9 8 7 34 34 H 1.08997 * 109.47055 * 180.02562 * 9 8 7 35 35 H 1.09006 * 109.47104 * 300.00607 * 9 8 7 36 36 H 1.09004 * 109.46609 * 85.68416 * 10 8 7 37 37 H 1.08997 * 109.46908 * 205.67947 * 10 8 7 38 38 H 1.08994 * 109.47431 * 325.68352 * 10 8 7 39 39 H 1.09002 * 109.47397 * 300.00136 * 11 8 7 40 40 H 1.09009 * 109.47210 * 59.99452 * 11 8 7 41 41 H 0.97005 * 119.99768 * 180.02562 * 15 14 12 42 42 H 1.09005 * 109.45814 * 178.24140 * 20 6 5 43 43 H 1.09003 * 109.46200 * 58.27906 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7248 1.2474 5 6 3.5721 -0.7735 1.2104 6 7 4.0115 -1.4768 -0.0016 7 6 5.4685 -1.6643 -0.0024 8 6 5.8947 -2.3428 -1.3059 9 6 4.8640 -3.4072 -1.6874 10 6 5.9841 -1.2973 -2.4194 11 6 7.2618 -3.0022 -1.1143 12 6 7.6813 -3.6710 -2.3979 13 1 7.0370 -3.6302 -3.2637 14 6 8.8872 -4.3359 -2.4667 15 7 9.6716 -4.3861 -1.4123 16 14 9.4068 -5.1655 -4.0577 17 1 10.1726 -4.2036 -4.8904 18 1 10.2603 -6.3406 -3.7475 19 1 8.2006 -5.6120 -4.8000 20 6 3.5708 -0.7732 -1.2128 21 6 2.0417 -0.7244 -1.2482 22 1 1.6455 -1.7397 -1.2678 23 9 1.6225 -0.0366 -2.3921 24 1 -0.3634 -1.0276 0.0023 25 1 -0.3634 0.5158 0.8889 26 1 -0.3634 0.5119 -0.8912 27 1 1.7174 -0.1891 2.1392 28 1 1.6469 -1.7401 1.2671 29 1 3.9678 0.2420 1.2047 30 1 3.9401 -1.3015 2.0902 31 1 5.9597 -0.6947 0.0800 32 1 5.7548 -2.2897 0.8433 33 1 3.8900 -2.9374 -1.8238 34 1 5.1678 -3.8909 -2.6157 35 1 4.8001 -4.1520 -0.8940 36 1 6.9677 -0.8279 -2.3987 37 1 5.8325 -1.7806 -3.3845 38 1 5.2162 -0.5388 -2.2682 39 1 7.9961 -2.2439 -0.8424 40 1 7.1980 -3.7470 -0.3209 41 1 10.5202 -4.8536 -1.4609 42 1 3.9378 -1.3009 -2.0932 43 1 3.9666 0.2425 -1.2072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611521406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:02 Heat of formation + Delta-G solvation = -56.146425 kcal Electronic energy + Delta-G solvation = -20682.864587 eV Core-core repulsion = 17677.013667 eV Total energy + Delta-G solvation = -3005.850920 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.59179 -39.49603 -36.63510 -33.69427 -32.12409 -30.43052 -28.57302 -27.01259 -26.39314 -25.21359 -22.96062 -22.66171 -21.57800 -20.00721 -18.00108 -16.32702 -16.09821 -15.93580 -15.46630 -15.09382 -14.61638 -14.42103 -13.85462 -13.56541 -13.47106 -13.05071 -12.83324 -12.62645 -12.32344 -12.18998 -11.94256 -11.73765 -11.64479 -11.20525 -10.96338 -10.81669 -10.79325 -10.68066 -10.49653 -10.42845 -10.31585 -10.17930 -9.78896 -9.69223 -8.92003 -8.80642 -8.30749 -8.09830 -5.95406 -3.95447 3.34171 3.40811 3.43881 3.96095 4.42246 4.49849 4.57638 4.60642 4.83196 5.07194 5.27857 5.30784 5.40373 5.42028 5.51024 5.54545 5.62844 5.67014 5.75906 5.81392 5.84276 5.91657 5.98288 6.02164 6.06676 6.20072 6.30351 6.32669 6.40232 6.58132 6.76166 6.87478 7.15295 7.18452 7.24738 7.34770 7.41004 7.70056 7.85962 8.04407 8.49177 9.09948 9.67582 11.16258 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.038598 B = 0.004802 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.243647 B = 5829.884191 C = 6248.313326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 H 0.075 0.925 4 C -0.108 4.108 5 C 0.049 3.951 6 N -0.527 5.527 7 C 0.067 3.933 8 C -0.061 4.061 9 C -0.120 4.120 10 C -0.150 4.150 11 C 0.036 3.964 12 C -0.506 4.506 13 H 0.058 0.942 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.011 3.989 21 C 0.094 3.906 22 H 0.090 0.910 23 F -0.214 7.214 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.013 0.987 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.121 0.879 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.829 8.437 4.456 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 H 0.093 0.907 4 C -0.145 4.145 5 C -0.079 4.079 6 N -0.251 5.251 7 C -0.059 4.059 8 C -0.062 4.062 9 C -0.177 4.177 10 C -0.207 4.207 11 C -0.001 4.001 12 C -0.544 4.544 13 H 0.076 0.924 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.715 3.285 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.117 4.117 21 C 0.058 3.942 22 H 0.108 0.892 23 F -0.195 7.195 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.068 0.932 42 H 0.139 0.861 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.886 7.919 4.496 18.311 hybrid contribution 0.911 0.380 -0.834 1.292 sum -14.975 8.299 3.662 17.508 Atomic orbital electron populations 1.21805 0.94421 1.02188 1.02014 1.21772 0.96629 1.00213 0.95095 0.90678 1.21589 0.95204 1.01255 0.96491 1.22147 0.95122 0.96731 0.93947 1.61956 1.14550 1.48074 1.00544 1.22325 0.84328 0.98915 1.00371 1.20677 0.98722 0.95008 0.91752 1.21789 0.96776 0.97929 1.01211 1.22351 1.00913 0.98246 0.99149 1.19160 0.88821 0.95001 0.97119 1.21223 1.02991 1.32644 0.97585 0.92407 1.25005 0.96829 0.96655 0.96057 1.69964 1.11393 1.43621 1.28816 0.86670 0.78572 0.79131 0.84083 1.20848 1.21375 1.19917 1.23368 0.93196 0.98089 0.97025 1.21678 0.95500 0.95783 0.81257 0.89191 1.92779 1.91423 1.82208 1.53126 0.92366 0.92406 0.92256 0.91141 0.90657 0.95140 0.90374 0.95412 0.90615 0.93724 0.92751 0.93667 0.92972 0.92738 0.93330 0.96887 0.96595 0.93177 0.86136 0.94263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.10 37.16 0.34 -0.97 16 2 C -0.12 -1.23 2.57 -90.50 -0.23 -1.46 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.11 -1.06 5.38 -26.65 -0.14 -1.20 16 5 C 0.05 0.58 5.46 -3.83 -0.02 0.56 16 6 N -0.53 -7.58 3.85 -234.66 -0.90 -8.48 16 7 C 0.07 1.15 4.52 -3.82 -0.02 1.13 16 8 C -0.06 -1.21 0.53 -154.51 -0.08 -1.29 16 9 C -0.12 -2.28 7.45 37.16 0.28 -2.00 16 10 C -0.15 -2.80 7.08 37.16 0.26 -2.54 16 11 C 0.04 0.91 3.81 -27.89 -0.11 0.80 16 12 C -0.51 -13.83 7.80 -34.44 -0.27 -14.10 16 13 H 0.06 1.54 6.03 -52.48 -0.32 1.23 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 C 0.01 0.16 2.71 -3.84 -0.01 0.15 16 21 C 0.09 1.18 3.42 -26.65 -0.09 1.09 16 22 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 23 F -0.21 -2.99 16.67 2.25 0.04 -2.95 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.55 7.87 -51.92 -0.41 0.14 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 31 H 0.03 0.47 7.97 -51.93 -0.41 0.06 16 32 H 0.08 1.33 7.96 -51.93 -0.41 0.91 16 33 H 0.04 0.75 5.13 -51.93 -0.27 0.48 16 34 H 0.05 1.12 6.59 -51.93 -0.34 0.77 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 1.04 7.88 -51.93 -0.41 0.63 16 37 H 0.05 1.04 7.36 -51.93 -0.38 0.66 16 38 H 0.05 0.79 4.11 -51.93 -0.21 0.57 16 39 H 0.01 0.35 8.12 -51.93 -0.42 -0.08 16 40 H 0.02 0.43 8.13 -51.92 -0.42 0.00 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.12 1.87 3.35 -51.93 -0.17 1.69 16 43 H 0.04 0.56 7.53 -51.93 -0.39 0.17 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -28.83 319.56 -8.04 -36.87 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -7.51 Total: -2.42 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -0.19 Total: -18.38 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: -0.17 Total: -34.57 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.83 -8.04 -36.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611521406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.279 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds