Wall clock time and date at job start Mon Mar 30 2020 06:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52278 * 2 1 4 4 C 1.53116 * 109.57462 * 120.15748 * 2 1 3 5 5 C 1.53032 * 109.27800 * 177.58913 * 4 2 1 6 6 N 1.46852 * 109.52547 * 300.81874 * 5 4 2 7 7 C 1.46898 * 110.99966 * 185.83931 * 6 5 4 8 8 C 1.53006 * 109.46972 * 182.50344 * 7 6 5 9 9 C 1.53000 * 109.46931 * 320.94441 * 8 7 6 10 10 C 1.52998 * 109.47032 * 80.94098 * 8 7 6 11 11 C 1.52991 * 109.47120 * 200.94537 * 8 7 6 12 12 C 1.50695 * 109.47377 * 179.97438 * 11 8 7 13 13 H 1.08004 * 119.99851 * 359.97438 * 12 11 8 14 14 C 1.37878 * 120.00174 * 180.02562 * 12 11 8 15 15 N 1.31511 * 120.00128 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99754 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47223 * 89.99818 * 16 14 12 18 18 H 1.48508 * 109.47061 * 209.99751 * 16 14 12 19 19 H 1.48502 * 109.47269 * 329.99658 * 16 14 12 20 20 C 1.46847 * 111.19174 * 61.74153 * 6 5 4 21 21 C 1.53029 * 109.52670 * 298.25660 * 20 6 5 22 22 H 1.09002 * 109.50615 * 299.24198 * 21 20 6 23 23 F 1.39901 * 109.50790 * 179.12549 * 21 20 6 24 24 H 1.08998 * 109.47661 * 180.12921 * 1 2 3 25 25 H 1.09004 * 109.47164 * 300.12781 * 1 2 3 26 26 H 1.09009 * 109.47378 * 60.12713 * 1 2 3 27 27 H 1.09005 * 109.50146 * 297.53208 * 4 2 1 28 28 H 1.09008 * 109.50439 * 57.64831 * 4 2 1 29 29 H 1.08997 * 109.46304 * 60.83750 * 5 4 2 30 30 H 1.09007 * 109.46500 * 180.80241 * 5 4 2 31 31 H 1.09006 * 109.46948 * 302.50077 * 7 6 5 32 32 H 1.09003 * 109.47141 * 62.50017 * 7 6 5 33 33 H 1.09000 * 109.46956 * 59.99881 * 9 8 7 34 34 H 1.08997 * 109.47055 * 180.02562 * 9 8 7 35 35 H 1.09006 * 109.47104 * 300.00607 * 9 8 7 36 36 H 1.09004 * 109.46609 * 85.68416 * 10 8 7 37 37 H 1.08997 * 109.46908 * 205.67947 * 10 8 7 38 38 H 1.08994 * 109.47431 * 325.68352 * 10 8 7 39 39 H 1.09002 * 109.47397 * 300.00136 * 11 8 7 40 40 H 1.09009 * 109.47210 * 59.99452 * 11 8 7 41 41 H 0.97005 * 119.99768 * 180.02562 * 15 14 12 42 42 H 1.09005 * 109.45814 * 178.24140 * 20 6 5 43 43 H 1.09003 * 109.46200 * 58.27906 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0430 -0.7248 1.2474 5 6 3.5721 -0.7735 1.2104 6 7 4.0115 -1.4768 -0.0016 7 6 5.4685 -1.6643 -0.0024 8 6 5.8947 -2.3428 -1.3059 9 6 4.8640 -3.4072 -1.6874 10 6 5.9841 -1.2973 -2.4194 11 6 7.2618 -3.0022 -1.1143 12 6 7.6813 -3.6710 -2.3979 13 1 7.0370 -3.6302 -3.2637 14 6 8.8872 -4.3359 -2.4667 15 7 9.6716 -4.3861 -1.4123 16 14 9.4068 -5.1655 -4.0577 17 1 10.1726 -4.2036 -4.8904 18 1 10.2603 -6.3406 -3.7475 19 1 8.2006 -5.6120 -4.8000 20 6 3.5708 -0.7732 -1.2128 21 6 2.0417 -0.7244 -1.2482 22 1 1.6455 -1.7397 -1.2678 23 9 1.6225 -0.0366 -2.3921 24 1 -0.3634 -1.0276 0.0023 25 1 -0.3634 0.5158 0.8889 26 1 -0.3634 0.5119 -0.8912 27 1 1.7174 -0.1891 2.1392 28 1 1.6469 -1.7401 1.2671 29 1 3.9678 0.2420 1.2047 30 1 3.9401 -1.3015 2.0902 31 1 5.9597 -0.6947 0.0800 32 1 5.7548 -2.2897 0.8433 33 1 3.8900 -2.9374 -1.8238 34 1 5.1678 -3.8909 -2.6157 35 1 4.8001 -4.1520 -0.8940 36 1 6.9677 -0.8279 -2.3987 37 1 5.8325 -1.7806 -3.3845 38 1 5.2162 -0.5388 -2.2682 39 1 7.9961 -2.2439 -0.8424 40 1 7.1980 -3.7470 -0.3209 41 1 10.5202 -4.8536 -1.4609 42 1 3.9378 -1.3009 -2.0932 43 1 3.9666 0.2425 -1.2072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611521406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:02 Heat of formation + Delta-G solvation = -71.760456 kcal Electronic energy + Delta-G solvation = -20683.541662 eV Core-core repulsion = 17677.013667 eV Total energy + Delta-G solvation = -3006.527995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.63047 -40.73435 -37.94148 -35.15648 -33.90545 -31.52364 -29.68649 -28.86811 -27.97809 -26.54772 -24.56283 -23.86094 -22.65838 -20.94044 -19.64289 -18.31039 -17.33548 -17.07824 -16.47421 -16.42496 -16.18734 -15.68304 -15.09157 -14.99058 -14.73603 -14.44276 -14.07053 -13.83390 -13.73564 -13.53911 -13.22006 -12.99776 -12.86720 -12.69812 -12.54261 -12.37944 -12.29104 -12.06867 -11.94849 -11.80902 -11.59986 -11.42823 -11.38473 -11.18646 -10.85037 -10.50404 -10.42293 -9.27549 -8.14060 -6.20923 1.40616 1.40920 1.51649 2.43509 2.82422 3.20010 3.53039 3.63494 3.72439 3.87144 4.06135 4.15906 4.19900 4.34046 4.40050 4.45017 4.55505 4.64726 4.68325 4.75972 4.80309 4.85398 4.89133 4.92853 4.96831 5.00759 5.10213 5.14790 5.17667 5.27224 5.33636 5.43612 5.47527 5.55720 5.56456 5.63049 5.85194 5.91230 6.09089 6.17577 6.36898 6.93951 7.46516 8.98206 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.038598 B = 0.004802 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.243647 B = 5829.884191 C = 6248.313326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.074 0.926 4 C -0.099 4.099 5 C 0.045 3.955 6 N -0.527 5.527 7 C 0.077 3.923 8 C -0.057 4.057 9 C -0.109 4.109 10 C -0.143 4.143 11 C 0.043 3.957 12 C -0.514 4.514 13 H 0.063 0.937 14 C -0.002 4.002 15 N -0.937 5.937 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.264 1.264 20 C 0.010 3.990 21 C 0.095 3.905 22 H 0.094 0.906 23 F -0.223 7.223 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.048 0.952 38 H 0.077 0.923 39 H -0.016 1.016 40 H -0.013 1.013 41 H 0.260 0.740 42 H 0.105 0.895 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.818 9.007 4.270 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 H 0.092 0.908 4 C -0.137 4.137 5 C -0.083 4.083 6 N -0.252 5.252 7 C -0.050 4.050 8 C -0.058 4.058 9 C -0.166 4.166 10 C -0.199 4.199 11 C 0.006 3.994 12 C -0.552 4.552 13 H 0.081 0.919 14 C -0.199 4.199 15 N -0.578 5.578 16 Si 0.780 3.220 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.118 4.118 21 C 0.058 3.942 22 H 0.112 0.888 23 F -0.204 7.204 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.003 0.997 40 H 0.006 0.994 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.897 8.499 4.306 20.275 hybrid contribution 1.523 0.230 -0.738 1.708 sum -16.374 8.728 3.568 18.895 Atomic orbital electron populations 1.21778 0.93041 1.02680 1.02564 1.21757 0.97723 0.99811 0.94043 0.90801 1.21566 0.93249 1.01687 0.97208 1.22279 0.96779 0.96544 0.92664 1.61910 1.12330 1.49102 1.01855 1.22049 0.86424 0.98330 0.98226 1.20527 0.95922 0.95484 0.93829 1.21684 0.97733 0.97423 0.99801 1.22296 1.00818 0.98453 0.98357 1.19032 0.91357 0.93639 0.95392 1.21595 1.03025 1.32218 0.98403 0.91929 1.25882 0.97065 0.97532 0.99428 1.70100 1.11893 1.44780 1.31060 0.85605 0.78409 0.78041 0.79973 1.20169 1.21148 1.18798 1.23289 0.94683 0.97612 0.96175 1.21730 0.94099 0.96402 0.81924 0.88776 1.92765 1.91372 1.82414 1.53829 0.91927 0.90741 0.92866 0.88710 0.90525 0.94885 0.89943 0.95454 0.91509 0.91082 0.94569 0.94537 0.94821 0.93290 0.90485 0.99723 0.99438 0.93148 0.87700 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.10 71.98 0.66 -1.45 16 2 C -0.11 -2.04 2.57 -10.71 -0.03 -2.07 16 3 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.10 -1.63 5.38 30.64 0.16 -1.47 16 5 C 0.04 0.96 5.46 86.32 0.47 1.43 16 6 N -0.53 -14.35 3.85 -896.34 -3.45 -17.80 16 7 C 0.08 2.61 4.52 86.31 0.39 3.00 16 8 C -0.06 -2.28 0.53 -52.18 -0.03 -2.30 16 9 C -0.11 -4.13 7.45 71.98 0.54 -3.59 16 10 C -0.14 -5.32 7.08 71.98 0.51 -4.81 16 11 C 0.04 2.25 3.81 29.84 0.11 2.36 16 12 C -0.51 -28.65 7.80 25.60 0.20 -28.45 16 13 H 0.06 3.36 6.03 -2.91 -0.02 3.35 16 14 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 15 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 16 Si 0.95 44.74 29.54 68.60 2.03 46.77 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 20 C 0.01 0.27 2.71 86.32 0.23 0.51 16 21 C 0.09 2.15 3.42 30.64 0.10 2.25 16 22 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 23 F -0.22 -5.77 16.67 44.97 0.75 -5.02 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.05 0.85 7.87 -2.38 -0.02 0.84 16 27 H 0.09 1.16 8.14 -2.38 -0.02 1.15 16 28 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 1.71 8.12 -2.38 -0.02 1.69 16 31 H 0.03 0.92 7.97 -2.38 -0.02 0.90 16 32 H 0.07 2.37 7.96 -2.39 -0.02 2.35 16 33 H 0.07 2.29 5.13 -2.39 -0.01 2.28 16 34 H 0.04 1.47 6.59 -2.39 -0.02 1.46 16 35 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.03 1.35 7.88 -2.38 -0.02 1.33 16 37 H 0.05 1.85 7.36 -2.39 -0.02 1.83 16 38 H 0.08 2.43 4.11 -2.39 -0.01 2.42 16 39 H -0.02 -0.89 8.12 -2.39 -0.02 -0.91 16 40 H -0.01 -0.73 8.13 -2.38 -0.02 -0.75 16 41 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 42 H 0.11 3.07 3.35 -2.38 -0.01 3.07 16 43 H 0.04 1.02 7.53 -2.39 -0.02 1.00 16 Total: -1.00 -62.56 319.56 4.36 -58.20 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.96 Total: 9.20 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.79 Total: -34.25 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -3.16 Total: -74.90 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.75 Total: -5.02 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -62.56 4.36 -58.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611521406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.563 kcal (2) G-P(sol) polarization free energy of solvation -62.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds