Wall clock time and date at job start Mon Mar 30 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81396 * 103.00127 * 2 1 4 4 C 1.53004 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.09007 * 110.62343 * 51.89401 * 4 3 2 6 6 C 1.55139 * 110.70415 * 288.59870 * 4 3 2 7 7 C 1.54903 * 101.65117 * 205.96056 * 6 4 3 8 8 N 1.47844 * 104.79617 * 37.06999 * 7 6 4 9 9 C 1.46899 * 111.00226 * 213.63396 * 8 7 6 10 10 C 1.52997 * 109.47254 * 290.84366 * 9 8 7 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00129 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99861 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00346 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99914 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46909 * 89.99800 * 17 15 13 19 19 H 1.48497 * 109.47155 * 209.99623 * 17 15 13 20 20 H 1.48495 * 109.46964 * 329.99741 * 17 15 13 21 21 C 1.47446 * 108.56735 * 335.90277 * 8 7 6 22 22 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47025 * 299.99998 * 1 2 3 24 24 H 1.08996 * 109.46681 * 60.00124 * 1 2 3 25 25 H 1.08996 * 109.47556 * 59.99822 * 3 2 1 26 26 H 1.09006 * 109.47057 * 299.99873 * 3 2 1 27 27 H 1.08993 * 110.98967 * 324.05441 * 6 4 3 28 28 H 1.09008 * 110.98982 * 87.83251 * 6 4 3 29 29 H 1.09001 * 110.37826 * 278.23995 * 7 6 4 30 30 H 1.09001 * 110.37545 * 155.89939 * 7 6 4 31 31 H 1.09002 * 109.47043 * 50.84437 * 9 8 7 32 32 H 1.09001 * 109.47354 * 170.84499 * 9 8 7 33 33 H 1.09002 * 109.47153 * 300.00004 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99633 * 10 9 8 35 35 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 36 36 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 37 37 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 38 38 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 39 39 H 0.96993 * 120.00442 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.88523 * 120.39601 * 21 8 7 41 41 H 1.08997 * 109.88991 * 241.42123 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1945 1.3577 -0.8037 6 6 4.3402 1.5417 1.3745 7 6 5.6401 2.3835 1.4061 8 7 5.2773 3.6629 0.7601 9 6 6.4136 4.2151 0.0106 10 6 7.4958 4.6741 0.9899 11 6 8.6796 5.2486 0.2093 12 6 9.7615 5.7081 1.1886 13 6 10.9272 6.2747 0.4197 14 1 10.8994 6.3037 -0.6595 15 6 12.0298 6.7550 1.0941 16 7 12.0640 6.7193 2.4083 17 14 13.4751 7.4567 0.1410 18 1 13.2737 8.9139 -0.0618 19 1 14.7282 7.2318 0.9054 20 1 13.5723 6.7820 -1.1783 21 6 4.1224 3.4302 -0.1266 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8032 2.2371 0.8899 26 1 1.8032 2.2371 -0.8900 27 1 3.6717 1.8248 2.1875 28 1 4.5638 0.4754 1.4090 29 1 6.4291 1.8846 0.8433 30 1 5.9567 2.5543 2.4350 31 1 6.8213 3.4485 -0.6483 32 1 6.0781 5.0646 -0.5843 33 1 7.0881 5.4407 1.6488 34 1 7.8314 3.8247 1.5849 35 1 9.0871 4.4817 -0.4493 36 1 8.3444 6.0981 -0.3859 37 1 9.3537 6.4752 1.8470 38 1 10.0969 4.8591 1.7842 39 1 12.8394 7.0575 2.8827 40 1 3.2845 4.0542 0.1844 41 1 4.3936 3.6605 -1.1569 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:50 Heat of formation + Delta-G solvation = -27.410744 kcal Electronic energy + Delta-G solvation = -16643.810656 eV Core-core repulsion = 14069.585891 eV Total energy + Delta-G solvation = -2574.224766 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.29672 -35.24237 -33.35440 -31.82163 -29.96027 -29.27794 -28.34370 -25.95901 -24.24725 -22.14176 -20.74889 -20.38719 -19.89828 -16.85815 -16.18477 -15.96773 -15.27661 -15.01616 -14.56978 -14.43274 -14.20305 -13.89432 -13.67400 -13.27607 -13.11969 -12.71333 -12.33399 -12.18906 -11.85023 -11.49212 -11.37480 -11.14285 -11.06026 -10.94677 -10.83607 -10.47596 -10.42777 -10.34826 -10.24989 -9.58167 -9.22019 -8.96763 -8.30145 -8.25450 -8.02915 -5.94941 -3.97054 1.30673 2.23849 3.34578 3.40487 3.44041 3.99571 4.31857 4.34496 4.49835 4.66097 4.72677 4.74843 4.94124 5.11325 5.22162 5.26335 5.29334 5.39580 5.40002 5.41430 5.55103 5.62933 5.79304 5.86152 5.94604 6.00576 6.08545 6.19419 6.29093 6.56520 6.85451 7.01925 7.04193 7.12164 7.28989 7.74474 7.90802 8.06476 8.49277 9.10515 9.66548 11.16410 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.076673 B = 0.002612 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.100971 B =10715.435102 C =10825.563159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.265 6.265 3 C -0.070 4.070 4 C -0.095 4.095 5 H 0.084 0.916 6 C -0.120 4.120 7 C 0.041 3.959 8 N -0.529 5.529 9 C 0.051 3.949 10 C -0.112 4.112 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.052 3.948 22 H 0.100 0.900 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.046 0.954 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.076 0.924 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.058 -12.112 -4.469 26.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.039 6.039 3 C -0.219 4.219 4 C -0.116 4.116 5 H 0.102 0.898 6 C -0.158 4.158 7 C -0.086 4.086 8 N -0.253 5.253 9 C -0.076 4.076 10 C -0.150 4.150 11 C -0.148 4.148 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.078 4.078 22 H 0.118 0.882 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.418 -12.575 -3.947 26.005 hybrid contribution 0.206 0.877 -1.115 1.433 sum -22.212 -11.698 -5.061 25.609 Atomic orbital electron populations 1.23375 0.94472 1.06444 1.04850 1.86990 1.07019 1.11825 1.98050 1.23419 0.99484 0.93953 1.05035 1.22183 0.92377 0.97618 0.99382 0.89802 1.22792 0.96922 1.00010 0.96113 1.23083 0.96351 0.88611 1.00575 1.63632 1.06123 1.25734 1.29787 1.22464 0.90942 0.98562 0.95679 1.21619 0.94699 1.00715 0.97938 1.21600 0.95270 0.98891 0.98991 1.19087 0.92156 0.96211 0.94132 1.21294 1.01501 1.39887 0.93083 0.92797 1.25041 0.98554 0.96141 0.94863 1.69966 1.30059 1.47045 1.06488 0.86610 0.82121 0.79406 0.79957 1.20691 1.21252 1.19936 1.22855 0.94839 0.93851 0.96275 0.88167 0.90508 0.90596 0.89678 0.90023 0.90510 0.90529 0.93311 0.89886 0.94997 0.91133 0.91731 0.92672 0.93751 0.93522 0.96620 0.96738 0.93066 0.90569 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.76 101.05 1.09 0.38 16 2 S -0.26 -2.30 22.09 -107.50 -2.38 -4.67 16 3 C -0.07 -0.55 5.27 37.16 0.20 -0.36 16 4 C -0.10 -0.88 2.92 -88.80 -0.26 -1.14 16 5 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 6 C -0.12 -1.20 6.22 -24.60 -0.15 -1.35 16 7 C 0.04 0.50 5.78 -2.30 -0.01 0.49 16 8 N -0.53 -6.94 5.16 -231.26 -1.19 -8.14 16 9 C 0.05 0.75 4.57 -3.83 -0.02 0.73 16 10 C -0.11 -1.98 5.26 -26.74 -0.14 -2.12 16 11 C -0.11 -2.31 5.15 -26.74 -0.14 -2.45 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 17 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.05 0.54 6.46 -2.84 -0.02 0.52 16 22 H 0.10 0.49 8.14 -51.92 -0.42 0.06 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.64 8.00 -51.93 -0.42 0.22 16 26 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 27 H 0.08 0.75 7.94 -51.93 -0.41 0.34 16 28 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 29 H 0.05 0.62 7.62 -51.93 -0.40 0.22 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.03 0.46 7.85 -51.93 -0.41 0.05 16 32 H 0.07 1.00 8.03 -51.93 -0.42 0.59 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.98 7.49 -51.93 -0.39 0.60 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.08 0.75 7.82 -51.93 -0.41 0.34 16 41 H 0.06 0.58 7.55 -51.93 -0.39 0.19 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -30.82 339.39 -10.60 -41.42 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -7.85 Total: -5.18 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -0.01 Total: -18.77 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: -0.46 Total: -34.95 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.38 Total: -4.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.82 -10.60 -41.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.008 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds