Wall clock time and date at job start Mon Mar 30 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81396 * 103.00127 * 2 1 4 4 C 1.53004 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.09007 * 110.62343 * 51.89401 * 4 3 2 6 6 C 1.55139 * 110.70415 * 288.59870 * 4 3 2 7 7 C 1.54903 * 101.65117 * 205.96056 * 6 4 3 8 8 N 1.47844 * 104.79617 * 37.06999 * 7 6 4 9 9 C 1.46899 * 111.00226 * 213.63396 * 8 7 6 10 10 C 1.52997 * 109.47254 * 290.84366 * 9 8 7 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00129 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99861 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00346 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99914 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46909 * 89.99800 * 17 15 13 19 19 H 1.48497 * 109.47155 * 209.99623 * 17 15 13 20 20 H 1.48495 * 109.46964 * 329.99741 * 17 15 13 21 21 C 1.47446 * 108.56735 * 335.90277 * 8 7 6 22 22 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47025 * 299.99998 * 1 2 3 24 24 H 1.08996 * 109.46681 * 60.00124 * 1 2 3 25 25 H 1.08996 * 109.47556 * 59.99822 * 3 2 1 26 26 H 1.09006 * 109.47057 * 299.99873 * 3 2 1 27 27 H 1.08993 * 110.98967 * 324.05441 * 6 4 3 28 28 H 1.09008 * 110.98982 * 87.83251 * 6 4 3 29 29 H 1.09001 * 110.37826 * 278.23995 * 7 6 4 30 30 H 1.09001 * 110.37545 * 155.89939 * 7 6 4 31 31 H 1.09002 * 109.47043 * 50.84437 * 9 8 7 32 32 H 1.09001 * 109.47354 * 170.84499 * 9 8 7 33 33 H 1.09002 * 109.47153 * 300.00004 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99633 * 10 9 8 35 35 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 36 36 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 37 37 H 1.09002 * 109.47153 * 300.00216 * 12 11 10 38 38 H 1.09001 * 109.47289 * 60.00300 * 12 11 10 39 39 H 0.96993 * 120.00442 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.88523 * 120.39601 * 21 8 7 41 41 H 1.08997 * 109.88991 * 241.42123 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1945 1.3577 -0.8037 6 6 4.3402 1.5417 1.3745 7 6 5.6401 2.3835 1.4061 8 7 5.2773 3.6629 0.7601 9 6 6.4136 4.2151 0.0106 10 6 7.4958 4.6741 0.9899 11 6 8.6796 5.2486 0.2093 12 6 9.7615 5.7081 1.1886 13 6 10.9272 6.2747 0.4197 14 1 10.8994 6.3037 -0.6595 15 6 12.0298 6.7550 1.0941 16 7 12.0640 6.7193 2.4083 17 14 13.4751 7.4567 0.1410 18 1 13.2737 8.9139 -0.0618 19 1 14.7282 7.2318 0.9054 20 1 13.5723 6.7820 -1.1783 21 6 4.1224 3.4302 -0.1266 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8032 2.2371 0.8899 26 1 1.8032 2.2371 -0.8900 27 1 3.6717 1.8248 2.1875 28 1 4.5638 0.4754 1.4090 29 1 6.4291 1.8846 0.8433 30 1 5.9567 2.5543 2.4350 31 1 6.8213 3.4485 -0.6483 32 1 6.0781 5.0646 -0.5843 33 1 7.0881 5.4407 1.6488 34 1 7.8314 3.8247 1.5849 35 1 9.0871 4.4817 -0.4493 36 1 8.3444 6.0981 -0.3859 37 1 9.3537 6.4752 1.8470 38 1 10.0969 4.8591 1.7842 39 1 12.8394 7.0575 2.8827 40 1 3.2845 4.0542 0.1844 41 1 4.3936 3.6605 -1.1569 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:50 Heat of formation + Delta-G solvation = -44.835669 kcal Electronic energy + Delta-G solvation = -16644.566258 eV Core-core repulsion = 14069.585891 eV Total energy + Delta-G solvation = -2574.980367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 257.151 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.23607 -36.78763 -35.02237 -33.43502 -30.95430 -29.87322 -29.75036 -27.19514 -25.72921 -23.58604 -22.03637 -21.44954 -21.25830 -18.44390 -17.55180 -16.92077 -16.51553 -16.39980 -16.05600 -15.33528 -15.08161 -14.63424 -14.56745 -14.38108 -14.19539 -13.97661 -13.68272 -13.45908 -13.25009 -12.91415 -12.79856 -12.58464 -12.26409 -12.18782 -11.97823 -11.96443 -11.87117 -11.62742 -11.34886 -11.28865 -10.98140 -10.85771 -10.55597 -9.27208 -8.67165 -8.19812 -6.31489 0.74027 1.39309 1.41328 1.52424 1.69607 2.40823 3.00249 3.12627 3.55249 3.59667 3.83808 4.07736 4.20134 4.27716 4.34079 4.34933 4.36742 4.39638 4.53265 4.56487 4.62802 4.68403 4.75533 4.85795 4.89718 4.90249 4.95620 5.04895 5.08466 5.24115 5.27845 5.30013 5.36112 5.55139 5.77289 5.86663 6.04400 6.12939 6.25802 6.86027 7.37720 8.92130 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.076673 B = 0.002612 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.100971 B =10715.435102 C =10825.563159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.316 6.316 3 C -0.058 4.058 4 C -0.087 4.087 5 H 0.078 0.922 6 C -0.111 4.111 7 C 0.038 3.962 8 N -0.541 5.541 9 C 0.062 3.938 10 C -0.101 4.101 11 C -0.096 4.096 12 C 0.023 3.977 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.005 4.005 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.052 3.948 22 H 0.108 0.892 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.052 0.948 37 H -0.011 1.011 38 H -0.012 1.012 39 H 0.264 0.736 40 H 0.087 0.913 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.169 -12.111 -5.961 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.090 6.090 3 C -0.206 4.206 4 C -0.107 4.107 5 H 0.096 0.904 6 C -0.150 4.150 7 C -0.090 4.090 8 N -0.265 5.265 9 C -0.066 4.066 10 C -0.139 4.139 11 C -0.135 4.135 12 C -0.014 4.014 13 C -0.582 4.582 14 H 0.079 0.921 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.078 4.078 22 H 0.126 0.874 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.007 0.993 38 H 0.006 0.994 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.550 -12.582 -5.448 27.251 hybrid contribution 0.512 0.857 -0.597 1.163 sum -23.039 -11.725 -6.045 26.548 Atomic orbital electron populations 1.23415 0.91386 1.07318 1.05800 1.87167 1.10531 1.13121 1.98188 1.23321 0.98202 0.93130 1.05945 1.22078 0.93507 0.96611 0.98552 0.90385 1.22715 0.95782 0.99661 0.96798 1.23091 0.97374 0.88711 0.99807 1.63573 1.06199 1.26357 1.30406 1.22252 0.90602 0.99047 0.94719 1.21438 0.94492 0.99948 0.98042 1.21402 0.94838 0.99270 0.97946 1.19018 0.93489 0.94355 0.94547 1.21740 1.02551 1.40257 0.93659 0.92143 1.26050 1.01880 0.96371 0.95906 1.70105 1.31186 1.47858 1.08353 0.85411 0.77889 0.78847 0.78678 1.19646 1.20694 1.18686 1.22907 0.93964 0.94800 0.96088 0.87362 0.89634 0.89542 0.89054 0.88759 0.90162 0.90333 0.94027 0.90883 0.94659 0.90289 0.92737 0.93364 0.93273 0.92878 0.99266 0.99393 0.92770 0.89480 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.76 113.37 1.22 0.20 16 2 S -0.32 -5.02 22.09 -56.49 -1.25 -6.27 16 3 C -0.06 -0.78 5.27 71.98 0.38 -0.40 16 4 C -0.09 -1.47 2.92 -9.61 -0.03 -1.50 16 5 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 6 C -0.11 -2.10 6.22 31.98 0.20 -1.91 16 7 C 0.04 0.90 5.78 86.77 0.50 1.40 16 8 N -0.54 -13.62 5.16 -885.56 -4.57 -18.19 16 9 C 0.06 1.74 4.57 86.30 0.39 2.14 16 10 C -0.10 -3.60 5.26 30.59 0.16 -3.44 16 11 C -0.10 -4.09 5.15 30.59 0.16 -3.93 16 12 C 0.02 1.27 4.97 29.85 0.15 1.42 16 13 C -0.54 -31.99 9.11 25.60 0.23 -31.75 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 16 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 17 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 21 C 0.05 0.98 6.46 86.64 0.56 1.54 16 22 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.09 1.14 8.00 -2.39 -0.02 1.12 16 26 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.47 7.94 -2.39 -0.02 1.45 16 28 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.04 1.05 7.62 -2.39 -0.02 1.03 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 0.98 7.85 -2.39 -0.02 0.96 16 32 H 0.08 2.10 8.03 -2.39 -0.02 2.08 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.76 7.49 -2.39 -0.02 1.74 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 37 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 38 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.09 1.49 7.82 -2.39 -0.02 1.47 16 41 H 0.06 1.13 7.55 -2.39 -0.02 1.12 16 Total: -1.00 -66.38 339.39 1.82 -64.55 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 0.95 Total: 6.97 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 4.39 Total: -36.06 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -4.29 Total: -76.38 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -1.25 Total: -6.27 kcal Total: -66.38 1.82 -64.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.717 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds