Wall clock time and date at job start Mon Mar 30 2020 06:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99848 * 2 1 4 4 H 1.48495 * 109.47389 * 239.99901 * 3 2 1 5 5 H 1.48505 * 109.47233 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46947 * 120.00065 * 3 2 1 7 7 C 1.37871 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47318 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46758 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46985 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47008 * 179.97438 * 12 11 10 14 14 C 1.46840 * 111.00172 * 293.95230 * 13 12 11 15 15 C 1.53037 * 109.52462 * 174.16291 * 14 13 12 16 16 C 1.53120 * 109.27885 * 59.18283 * 15 14 13 17 17 C 1.53126 * 109.15922 * 302.34603 * 16 15 14 18 18 H 1.08997 * 109.50152 * 297.67724 * 17 16 15 19 19 C 1.52992 * 109.50239 * 177.59758 * 17 16 15 20 20 C 1.52997 * 109.47482 * 64.99931 * 19 17 16 21 21 F 1.39901 * 109.47234 * 180.02562 * 20 19 17 22 22 C 1.46848 * 110.99619 * 169.74361 * 13 12 11 23 23 H 0.96995 * 120.00272 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46750 * 59.99998 * 9 7 2 25 25 H 1.08998 * 109.47199 * 300.00453 * 9 7 2 26 26 H 1.08998 * 109.47238 * 60.00622 * 10 9 7 27 27 H 1.08998 * 109.47097 * 300.00199 * 10 9 7 28 28 H 1.09000 * 109.47572 * 60.00089 * 11 10 9 29 29 H 1.08998 * 109.47364 * 299.99895 * 11 10 9 30 30 H 1.09000 * 109.46829 * 59.99712 * 12 11 10 31 31 H 1.08998 * 109.47047 * 300.00166 * 12 11 10 32 32 H 1.09005 * 109.46615 * 54.14336 * 14 13 12 33 33 H 1.09009 * 109.46372 * 294.18165 * 14 13 12 34 34 H 1.09001 * 109.50121 * 299.23960 * 15 14 13 35 35 H 1.09004 * 109.53731 * 179.14074 * 15 14 13 36 36 H 1.08995 * 109.52210 * 182.44352 * 16 15 14 37 37 H 1.08996 * 109.57390 * 62.28085 * 16 15 14 38 38 H 1.09002 * 109.47103 * 304.99684 * 19 17 16 39 39 H 1.08998 * 109.46862 * 185.00496 * 19 17 16 40 40 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 41 41 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 42 42 H 1.09005 * 109.46223 * 65.82529 * 22 13 12 43 43 H 1.08994 * 109.46602 * 305.85458 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 7 1.7401 -7.4222 -0.0018 14 6 0.9954 -7.5999 1.2512 15 6 0.1307 -8.8592 1.1581 16 6 1.0296 -10.0717 0.9004 17 6 1.8298 -9.8401 -0.3844 18 1 1.1455 -9.7496 -1.2279 19 6 2.7747 -11.0206 -0.6174 20 6 1.9552 -12.2869 -0.8742 21 9 2.8193 -13.3664 -1.0867 22 6 2.6452 -8.5524 -0.2465 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.8539 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 3.1013 -6.0927 0.8881 31 1 3.1012 -6.0918 -0.8918 32 1 0.3571 -6.7327 1.4206 33 1 1.6970 -7.7015 2.0794 34 1 -0.5803 -8.7526 0.3389 35 1 -0.4105 -8.9997 2.0938 36 1 0.4141 -10.9645 0.7902 37 1 1.7149 -10.2028 1.7378 38 1 3.4000 -11.1649 0.2637 39 1 3.4065 -10.8152 -1.4815 40 1 1.3299 -12.1426 -1.7552 41 1 1.3235 -12.4922 -0.0099 42 1 3.3390 -8.6495 0.5886 43 1 3.2051 -8.3770 -1.1651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689866182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:06 Heat of formation + Delta-G solvation = -93.495447 kcal Electronic energy + Delta-G solvation = -19014.683249 eV Core-core repulsion = 16007.212754 eV Total energy + Delta-G solvation = -3007.470495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.88338 -39.44506 -35.92239 -34.05938 -32.62326 -31.74557 -29.28103 -28.05644 -25.38922 -24.12997 -23.02987 -22.11989 -20.58446 -19.96950 -19.83710 -16.48686 -16.41371 -16.18329 -15.62479 -15.48917 -15.20451 -14.54723 -14.48846 -14.27496 -13.90094 -13.86607 -13.08375 -12.68645 -12.46805 -12.33021 -12.11903 -11.67718 -11.60365 -11.35198 -11.25174 -11.04286 -11.02879 -10.87361 -10.63652 -10.54618 -10.44842 -10.29744 -10.19483 -9.57805 -9.23426 -8.99413 -8.31310 -8.25664 -5.96324 -3.98570 3.34939 3.39101 3.41693 3.79447 4.28376 4.37702 4.48269 4.48958 4.66033 4.69920 4.80516 4.99029 5.14010 5.23121 5.33451 5.38096 5.38664 5.40098 5.41510 5.49761 5.63930 5.65352 5.74320 5.75549 5.89125 5.93031 5.96459 6.03143 6.16617 6.22710 6.29136 6.54979 6.84081 6.99407 7.10705 7.16892 7.27791 7.72438 7.88845 8.04874 8.47674 9.08772 9.65123 11.15027 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.055500 B = 0.002774 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.382992 B =10090.222693 C =10388.871733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.113 4.113 12 C 0.057 3.943 13 N -0.539 5.539 14 C 0.051 3.949 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.083 4.083 18 H 0.083 0.917 19 C -0.147 4.147 20 C 0.060 3.940 21 F -0.222 7.222 22 C 0.062 3.938 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.552 -23.556 0.749 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.070 4.070 13 N -0.263 5.263 14 C -0.077 4.077 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.102 4.102 18 H 0.102 0.898 19 C -0.186 4.186 20 C 0.005 3.995 21 F -0.204 7.204 22 C -0.067 4.067 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.082 -23.440 0.365 23.535 hybrid contribution 1.099 0.945 0.685 1.603 sum 3.181 -22.495 1.050 22.743 Atomic orbital electron populations 1.69957 1.06041 1.26626 1.50977 1.25031 0.94849 0.99213 0.95437 0.86671 0.79588 0.83225 0.78582 1.20255 1.21302 1.20301 1.21257 0.92969 0.91246 1.50405 0.92850 1.19079 0.94011 0.91311 0.97121 1.21599 0.99095 0.94040 1.00014 1.21674 0.97865 0.93557 1.02015 1.22221 0.95942 0.88485 1.00363 1.61923 1.27648 1.01976 1.34734 1.22159 0.96885 0.98726 0.89963 1.21584 0.97998 0.93858 1.02022 1.21724 0.98491 0.98215 0.97234 1.21116 0.96953 0.93084 0.99003 0.89828 1.22174 0.98957 0.94049 1.03385 1.22081 0.91299 0.83325 1.02793 1.92760 1.73006 1.57958 1.96646 1.22062 0.93737 0.90225 1.00636 0.92996 0.96613 0.96784 0.93744 0.93488 0.91689 0.92597 0.95239 0.91042 0.89875 0.95252 0.90960 0.91580 0.91869 0.92181 0.90866 0.90568 0.90699 0.90658 0.95135 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 11 C -0.11 -1.95 5.15 -26.73 -0.14 -2.09 16 12 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 13 N -0.54 -6.81 4.65 -234.67 -1.09 -7.90 16 14 C 0.05 0.59 5.29 -3.84 -0.02 0.57 16 15 C -0.12 -1.10 6.09 -26.65 -0.16 -1.26 16 16 C -0.12 -0.95 4.98 -26.60 -0.13 -1.08 16 17 C -0.08 -0.69 2.35 -90.54 -0.21 -0.90 16 18 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.15 -1.07 5.14 -26.74 -0.14 -1.21 16 20 C 0.06 0.41 7.31 37.16 0.27 0.69 16 21 F -0.22 -2.18 17.36 2.25 0.04 -2.14 16 22 C 0.06 0.64 4.74 -3.83 -0.02 0.62 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.06 0.97 6.44 -51.93 -0.33 0.63 16 30 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 31 H 0.07 1.00 7.98 -51.93 -0.41 0.58 16 32 H 0.08 1.07 6.22 -51.93 -0.32 0.75 16 33 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.41 6.70 -51.93 -0.35 0.06 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.43 6.62 -51.93 -0.34 0.09 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.75 8.01 -51.93 -0.42 0.34 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -30.62 337.00 -9.58 -40.20 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -8.06 Total: -5.83 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.26 Total: -19.66 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: -0.36 Total: -34.56 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.62 -9.58 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689866182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.300 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds