Wall clock time and date at job start Mon Mar 30 2020 06:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99848 * 2 1 4 4 H 1.48495 * 109.47389 * 239.99901 * 3 2 1 5 5 H 1.48505 * 109.47233 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46947 * 120.00065 * 3 2 1 7 7 C 1.37871 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47318 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46758 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46985 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.47008 * 179.97438 * 12 11 10 14 14 C 1.46840 * 111.00172 * 293.95230 * 13 12 11 15 15 C 1.53037 * 109.52462 * 174.16291 * 14 13 12 16 16 C 1.53120 * 109.27885 * 59.18283 * 15 14 13 17 17 C 1.53126 * 109.15922 * 302.34603 * 16 15 14 18 18 H 1.08997 * 109.50152 * 297.67724 * 17 16 15 19 19 C 1.52992 * 109.50239 * 177.59758 * 17 16 15 20 20 C 1.52997 * 109.47482 * 64.99931 * 19 17 16 21 21 F 1.39901 * 109.47234 * 180.02562 * 20 19 17 22 22 C 1.46848 * 110.99619 * 169.74361 * 13 12 11 23 23 H 0.96995 * 120.00272 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46750 * 59.99998 * 9 7 2 25 25 H 1.08998 * 109.47199 * 300.00453 * 9 7 2 26 26 H 1.08998 * 109.47238 * 60.00622 * 10 9 7 27 27 H 1.08998 * 109.47097 * 300.00199 * 10 9 7 28 28 H 1.09000 * 109.47572 * 60.00089 * 11 10 9 29 29 H 1.08998 * 109.47364 * 299.99895 * 11 10 9 30 30 H 1.09000 * 109.46829 * 59.99712 * 12 11 10 31 31 H 1.08998 * 109.47047 * 300.00166 * 12 11 10 32 32 H 1.09005 * 109.46615 * 54.14336 * 14 13 12 33 33 H 1.09009 * 109.46372 * 294.18165 * 14 13 12 34 34 H 1.09001 * 109.50121 * 299.23960 * 15 14 13 35 35 H 1.09004 * 109.53731 * 179.14074 * 15 14 13 36 36 H 1.08995 * 109.52210 * 182.44352 * 16 15 14 37 37 H 1.08996 * 109.57390 * 62.28085 * 16 15 14 38 38 H 1.09002 * 109.47103 * 304.99684 * 19 17 16 39 39 H 1.08998 * 109.46862 * 185.00496 * 19 17 16 40 40 H 1.09002 * 109.47153 * 59.99783 * 20 19 17 41 41 H 1.09001 * 109.46832 * 299.99974 * 20 19 17 42 42 H 1.09005 * 109.46223 * 65.82529 * 22 13 12 43 43 H 1.08994 * 109.46602 * 305.85458 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 7 1.7401 -7.4222 -0.0018 14 6 0.9954 -7.5999 1.2512 15 6 0.1307 -8.8592 1.1581 16 6 1.0296 -10.0717 0.9004 17 6 1.8298 -9.8401 -0.3844 18 1 1.1455 -9.7496 -1.2279 19 6 2.7747 -11.0206 -0.6174 20 6 1.9552 -12.2869 -0.8742 21 9 2.8193 -13.3664 -1.0867 22 6 2.6452 -8.5524 -0.2465 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.8539 -5.0446 -0.8914 29 1 0.8534 -5.0451 0.8886 30 1 3.1013 -6.0927 0.8881 31 1 3.1012 -6.0918 -0.8918 32 1 0.3571 -6.7327 1.4206 33 1 1.6970 -7.7015 2.0794 34 1 -0.5803 -8.7526 0.3389 35 1 -0.4105 -8.9997 2.0938 36 1 0.4141 -10.9645 0.7902 37 1 1.7149 -10.2028 1.7378 38 1 3.4000 -11.1649 0.2637 39 1 3.4065 -10.8152 -1.4815 40 1 1.3299 -12.1426 -1.7552 41 1 1.3235 -12.4922 -0.0099 42 1 3.3390 -8.6495 0.5886 43 1 3.2051 -8.3770 -1.1651 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689866182.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:06 Heat of formation + Delta-G solvation = -110.271696 kcal Electronic energy + Delta-G solvation = -19015.410722 eV Core-core repulsion = 16007.212754 eV Total energy + Delta-G solvation = -3008.197968 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.52892 -40.30368 -37.13430 -35.62532 -34.10668 -32.97271 -30.49465 -29.26967 -26.83511 -25.26657 -24.00317 -23.21579 -21.98353 -21.32639 -20.63919 -18.42225 -17.16205 -17.05798 -16.57660 -16.53093 -16.38422 -16.13773 -15.49816 -15.14183 -15.02405 -14.73141 -14.36520 -14.06899 -13.81121 -13.42477 -13.36007 -13.01133 -12.96293 -12.79067 -12.36364 -12.22770 -12.14415 -12.06528 -11.96930 -11.64453 -11.57313 -11.43697 -11.32629 -11.15919 -11.09385 -10.82504 -10.55173 -9.25218 -8.19964 -6.31674 1.39189 1.42709 1.50684 2.40709 2.87626 3.12542 3.62816 3.74826 3.82499 4.01267 4.03990 4.13565 4.16816 4.22643 4.31842 4.47335 4.51348 4.53825 4.59377 4.64915 4.67390 4.78269 4.79327 4.84796 4.88966 5.00089 5.03816 5.12944 5.15311 5.22654 5.26044 5.28179 5.34034 5.37499 5.52108 5.55123 5.77433 5.86556 6.14696 6.21846 6.26513 6.85680 7.37605 8.91804 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.055500 B = 0.002774 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.382992 B =10090.222693 C =10388.871733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.096 4.096 11 C -0.102 4.102 12 C 0.067 3.933 13 N -0.548 5.548 14 C 0.047 3.953 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.075 4.075 18 H 0.081 0.919 19 C -0.140 4.140 20 C 0.056 3.944 21 F -0.239 7.239 22 C 0.059 3.941 23 H 0.264 0.736 24 H -0.011 1.011 25 H -0.012 1.012 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.031 0.969 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.576 -24.454 0.836 24.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.135 4.135 11 C -0.140 4.140 12 C -0.061 4.061 13 N -0.272 5.272 14 C -0.080 4.080 15 C -0.151 4.151 16 C -0.154 4.154 17 C -0.094 4.094 18 H 0.100 0.900 19 C -0.178 4.178 20 C 0.002 3.998 21 F -0.221 7.221 22 C -0.068 4.068 23 H 0.073 0.927 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.050 0.950 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.115 -24.360 0.453 24.563 hybrid contribution 0.734 1.224 0.662 1.573 sum 3.849 -23.136 1.115 23.481 Atomic orbital electron populations 1.70098 1.07862 1.27856 1.51685 1.26028 0.95811 1.03497 0.94722 0.85484 0.78270 0.77961 0.79235 1.19082 1.20760 1.19123 1.21718 0.93558 0.92531 1.50563 0.92199 1.19005 0.94479 0.93271 0.94548 1.21401 0.97974 0.93706 1.00382 1.21486 0.98006 0.93174 1.01328 1.22009 0.94988 0.88348 1.00760 1.61893 1.28079 1.01949 1.35283 1.22199 0.96880 0.99330 0.89630 1.21567 0.97783 0.93297 1.02477 1.21725 0.98444 0.98200 0.96982 1.21034 0.96814 0.92344 0.99211 0.90047 1.22080 0.98696 0.93730 1.03339 1.22241 0.91096 0.82394 1.04116 1.92727 1.73700 1.58843 1.96796 1.22151 0.93740 0.90230 1.00705 0.92750 0.99255 0.99344 0.93299 0.92990 0.92698 0.93035 0.95050 0.90431 0.91709 0.95234 0.91550 0.90388 0.89822 0.91951 0.90885 0.90717 0.89476 0.89125 0.95040 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.10 -4.05 5.15 30.59 0.16 -3.90 16 11 C -0.10 -3.56 5.15 30.60 0.16 -3.40 16 12 C 0.07 1.86 4.96 86.31 0.43 2.29 16 13 N -0.55 -13.35 4.65 -896.35 -4.17 -17.52 16 14 C 0.05 1.08 5.29 86.33 0.46 1.54 16 15 C -0.11 -1.95 6.09 30.65 0.19 -1.76 16 16 C -0.12 -1.56 4.98 30.68 0.15 -1.40 16 17 C -0.08 -1.09 2.35 -10.74 -0.03 -1.12 16 18 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 19 C -0.14 -1.73 5.14 30.59 0.16 -1.57 16 20 C 0.06 0.64 7.31 71.98 0.53 1.17 16 21 F -0.24 -4.29 17.36 44.97 0.78 -3.51 16 22 C 0.06 1.14 4.74 86.33 0.41 1.55 16 23 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.83 6.44 -2.39 -0.02 1.81 16 30 H 0.03 0.86 8.12 -2.39 -0.02 0.85 16 31 H 0.08 2.07 7.98 -2.39 -0.02 2.05 16 32 H 0.06 1.69 6.22 -2.38 -0.01 1.68 16 33 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.08 0.81 6.70 -2.39 -0.02 0.80 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.76 6.62 -2.39 -0.02 0.75 16 42 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.08 1.42 8.01 -2.39 -0.02 1.40 16 Total: -1.00 -65.98 337.00 3.31 -62.68 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 0.94 Total: 5.85 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 3.45 Total: -36.55 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -3.89 Total: -75.39 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.78 Total: -3.51 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -65.98 3.31 -62.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689866182.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.596 kcal (2) G-P(sol) polarization free energy of solvation -65.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds