Wall clock time and date at job start Mon Mar 30 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00148 * 2 1 4 4 H 1.48493 * 109.47138 * 269.99874 * 3 2 1 5 5 H 1.48494 * 109.47019 * 29.99885 * 3 2 1 6 6 H 1.48505 * 109.47201 * 149.99494 * 3 2 1 7 7 C 1.37880 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00118 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47522 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47531 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47314 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47018 * 180.02562 * 12 11 10 14 14 C 1.46845 * 111.00194 * 65.78749 * 13 12 11 15 15 C 1.53035 * 109.52393 * 185.83810 * 14 13 12 16 16 C 1.53129 * 109.31040 * 300.84227 * 15 14 13 17 17 C 1.53127 * 109.15660 * 57.59413 * 16 15 14 18 18 H 1.09007 * 109.50054 * 62.36236 * 17 16 15 19 19 C 1.52997 * 109.50256 * 182.44196 * 17 16 15 20 20 C 1.53000 * 109.47060 * 294.92447 * 19 17 16 21 21 F 1.39898 * 109.46890 * 180.02562 * 20 19 17 22 22 C 1.46851 * 110.99606 * 190.00163 * 13 12 11 23 23 H 0.97000 * 119.99455 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47496 * 59.98849 * 9 7 2 25 25 H 1.09007 * 109.47129 * 299.99645 * 9 7 2 26 26 H 1.08999 * 109.47452 * 59.99095 * 10 9 7 27 27 H 1.09010 * 109.46669 * 299.99595 * 10 9 7 28 28 H 1.08999 * 109.47123 * 59.99740 * 11 10 9 29 29 H 1.08998 * 109.47269 * 299.99829 * 11 10 9 30 30 H 1.08999 * 109.47052 * 59.99924 * 12 11 10 31 31 H 1.09001 * 109.46815 * 299.99729 * 12 11 10 32 32 H 1.09000 * 109.46408 * 305.85713 * 14 13 12 33 33 H 1.09007 * 109.46054 * 65.82463 * 14 13 12 34 34 H 1.09005 * 109.50278 * 60.76165 * 15 14 13 35 35 H 1.08994 * 109.50353 * 180.84381 * 15 14 13 36 36 H 1.08998 * 109.49350 * 297.70978 * 16 15 14 37 37 H 1.08999 * 109.55516 * 177.51372 * 16 15 14 38 38 H 1.09002 * 109.47153 * 174.92128 * 19 17 16 39 39 H 1.09001 * 109.46832 * 54.92319 * 19 17 16 40 40 H 1.09001 * 109.47194 * 299.99650 * 20 19 17 41 41 H 1.08992 * 109.47399 * 59.99823 * 20 19 17 42 42 H 1.08992 * 109.46175 * 54.13945 * 22 13 12 43 43 H 1.08994 * 109.44879 * 294.16790 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4745 -6.1501 0.0005 13 7 1.7399 -7.4223 0.0005 14 6 0.9893 -7.5966 -1.2495 15 6 0.1251 -8.8561 -1.1557 16 6 1.0244 -10.0698 -0.9049 17 6 1.8313 -9.8411 0.3762 18 1 1.1513 -9.7524 1.2236 19 6 2.7772 -11.0223 0.6018 20 6 1.9589 -12.2886 0.8618 21 9 2.8239 -13.3685 1.0686 22 6 2.6461 -8.5531 0.2380 23 1 -0.4849 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8895 25 1 0.6241 -2.5567 0.8904 26 1 2.8720 -3.6044 0.8904 27 1 2.8718 -3.6044 -0.8896 28 1 0.8532 -5.0451 -0.8885 29 1 0.8539 -5.0446 0.8914 30 1 3.1018 -6.0923 0.8900 31 1 3.1004 -6.0924 -0.8900 32 1 0.3503 -6.7290 -1.4135 33 1 1.6870 -7.6960 -2.0812 34 1 -0.5822 -8.7517 -0.3329 35 1 -0.4205 -8.9934 -2.0893 36 1 1.7053 -10.1980 -1.7463 37 1 0.4093 -10.9628 -0.7935 38 1 3.4145 -10.8183 1.4623 39 1 3.3969 -11.1656 -0.2834 40 1 1.3392 -12.1453 1.7470 41 1 1.3217 -12.4926 0.0014 42 1 3.2103 -8.3801 1.1544 43 1 3.3357 -8.6479 -0.6006 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689866193.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:08 Heat of formation + Delta-G solvation = -93.532162 kcal Electronic energy + Delta-G solvation = -19014.958139 eV Core-core repulsion = 16007.486051 eV Total energy + Delta-G solvation = -3007.472087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.185 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.88393 -39.44424 -35.92283 -34.05933 -32.62337 -31.74654 -29.28207 -28.05649 -25.39090 -24.13074 -23.03016 -22.12188 -20.58475 -19.96645 -19.83768 -16.48723 -16.41354 -16.18679 -15.62455 -15.48968 -15.20538 -14.54741 -14.48629 -14.27376 -13.90197 -13.86688 -13.08287 -12.68726 -12.47198 -12.33214 -12.12049 -11.67850 -11.60155 -11.35281 -11.25108 -11.04263 -11.03400 -10.88564 -10.63568 -10.52495 -10.45463 -10.29517 -10.19489 -9.57998 -9.23524 -8.98679 -8.31702 -8.25680 -5.96663 -3.98752 3.33363 3.39422 3.42973 3.79442 4.28434 4.37631 4.48240 4.48897 4.65981 4.69957 4.80557 4.98977 5.14029 5.23137 5.33448 5.38098 5.38545 5.40033 5.41519 5.49838 5.63878 5.65328 5.74329 5.75550 5.89106 5.93017 5.96467 6.03152 6.16574 6.22693 6.29090 6.54896 6.83994 6.99325 7.10645 7.16858 7.27715 7.72567 7.88673 8.04683 8.47587 9.08825 9.64999 11.14721 Molecular weight = 257.19amu Principal moments of inertia in cm(-1) A = 0.055569 B = 0.002774 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.760848 B =10090.001516 C =10389.648199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.109 4.109 11 C -0.113 4.113 12 C 0.057 3.943 13 N -0.539 5.539 14 C 0.050 3.950 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.083 4.083 18 H 0.083 0.917 19 C -0.147 4.147 20 C 0.060 3.940 21 F -0.222 7.222 22 C 0.062 3.938 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.016 0.984 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.560 -23.565 -0.760 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.151 4.151 12 C -0.070 4.070 13 N -0.263 5.263 14 C -0.077 4.077 15 C -0.155 4.155 16 C -0.157 4.157 17 C -0.102 4.102 18 H 0.102 0.898 19 C -0.186 4.186 20 C 0.005 3.995 21 F -0.204 7.204 22 C -0.067 4.067 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.096 -23.453 -0.369 23.549 hybrid contribution 1.082 0.952 -0.698 1.601 sum 3.178 -22.501 -1.067 22.749 Atomic orbital electron populations 1.69971 1.06043 1.26499 1.51073 1.25037 0.94849 0.99227 0.95451 0.86610 0.79861 0.83573 0.78054 1.20716 1.21229 1.19909 1.21293 0.93007 0.91231 1.50262 0.92796 1.19084 0.94018 0.91329 0.97126 1.21599 0.99092 0.94035 1.00018 1.21674 0.97868 0.93563 1.02015 1.22222 0.95948 0.88480 1.00361 1.61927 1.27378 1.01972 1.35010 1.22159 0.96849 0.98734 0.89995 1.21584 0.97993 0.93856 1.02035 1.21727 0.98462 0.98212 0.97259 1.21118 0.96918 0.93079 0.99043 0.89831 1.22176 0.98958 0.94043 1.03387 1.22079 0.91281 0.83312 1.02824 1.92760 1.72950 1.57936 1.96723 1.22060 0.93743 0.90216 1.00640 0.93060 0.96782 0.96607 0.93484 0.93746 0.92600 0.91683 0.91038 0.95240 0.89866 0.95252 0.90969 0.91580 0.92185 0.91854 0.90568 0.90865 0.90708 0.90652 0.90774 0.95134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.27 5.15 -26.73 -0.14 -2.41 16 11 C -0.11 -1.96 5.14 -26.73 -0.14 -2.09 16 12 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 13 N -0.54 -6.81 4.66 -234.67 -1.09 -7.90 16 14 C 0.05 0.59 5.29 -3.84 -0.02 0.57 16 15 C -0.12 -1.10 6.09 -26.65 -0.16 -1.26 16 16 C -0.12 -0.94 4.98 -26.60 -0.13 -1.08 16 17 C -0.08 -0.69 2.35 -90.54 -0.21 -0.90 16 18 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 19 C -0.15 -1.07 5.14 -26.73 -0.14 -1.20 16 20 C 0.06 0.41 7.31 37.16 0.27 0.69 16 21 F -0.22 -2.18 17.36 2.25 0.04 -2.14 16 22 C 0.06 0.64 4.74 -3.83 -0.02 0.62 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.91 8.14 -51.92 -0.42 0.49 16 28 H 0.06 0.97 6.43 -51.93 -0.33 0.63 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.00 7.99 -51.93 -0.41 0.58 16 31 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.08 1.07 6.21 -51.93 -0.32 0.75 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.41 6.70 -51.93 -0.35 0.06 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.43 6.63 -51.93 -0.34 0.09 16 42 H 0.07 0.75 8.01 -51.93 -0.42 0.34 16 43 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 337.00 15.07 5.08 5.08 Total: -1.00 -30.64 337.00 -9.58 -40.22 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -8.06 Total: -5.86 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.26 Total: -19.65 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: -0.36 Total: -34.55 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.64 -9.58 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689866193.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.314 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds